Wall clock time and date at job start Tue Mar 31 2020 09:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47101 * 2 1 4 4 C 1.35990 * 116.99979 * 180.02562 * 3 2 1 5 5 C 1.38561 * 120.07290 * 0.02562 * 4 3 2 6 6 C 1.38247 * 119.99817 * 179.70494 * 5 4 3 7 7 C 1.38252 * 120.14640 * 0.55556 * 6 5 4 8 8 C 1.38243 * 120.14586 * 359.44600 * 7 6 5 9 9 C 1.50698 * 120.00221 * 180.25302 * 8 7 6 10 10 N 1.46900 * 109.47320 * 260.00104 * 9 8 7 11 11 C 1.46852 * 110.99810 * 45.79082 * 10 9 8 12 12 C 1.53039 * 109.52211 * 185.84105 * 11 10 9 13 13 C 1.53117 * 109.27846 * 300.81877 * 12 11 10 14 14 C 1.53117 * 109.16146 * 57.65417 * 13 12 11 15 15 H 1.08998 * 109.53280 * 62.30748 * 14 13 12 16 16 C 1.50698 * 109.50722 * 182.40634 * 14 13 12 17 17 H 1.07992 * 120.00464 * 119.80159 * 16 14 13 18 18 C 1.37881 * 119.99583 * 299.80624 * 16 14 13 19 19 N 1.31515 * 119.99760 * 179.97438 * 18 16 14 20 20 Si 1.86799 * 120.00396 * 359.97438 * 18 16 14 21 21 H 1.48500 * 109.47220 * 89.99519 * 20 18 16 22 22 H 1.48493 * 109.47281 * 210.00385 * 20 18 16 23 23 H 1.48506 * 109.46612 * 330.00186 * 20 18 16 24 24 C 1.46842 * 111.00100 * 169.99896 * 10 9 8 25 25 C 1.38573 * 119.99981 * 0.27715 * 8 7 6 26 26 O 1.35988 * 120.07412 * 180.02562 * 25 8 7 27 27 H 1.09006 * 109.47181 * 299.99851 * 1 2 3 28 28 H 1.09002 * 109.47664 * 59.99970 * 1 2 3 29 29 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46710 * 240.00572 * 2 1 3 31 31 H 1.08991 * 109.47317 * 120.00360 * 2 1 3 32 32 H 1.07994 * 120.00507 * 359.97438 * 5 4 3 33 33 H 1.08001 * 119.92589 * 180.30262 * 6 5 4 34 34 H 1.08002 * 119.93071 * 179.72702 * 7 6 5 35 35 H 1.09002 * 109.47228 * 20.00513 * 9 8 7 36 36 H 1.08999 * 109.47419 * 140.00320 * 9 8 7 37 37 H 1.09003 * 109.46144 * 305.85301 * 11 10 9 38 38 H 1.08995 * 109.46175 * 65.82040 * 11 10 9 39 39 H 1.09000 * 109.50115 * 180.88018 * 12 11 10 40 40 H 1.09001 * 109.50374 * 60.76250 * 12 11 10 41 41 H 1.09009 * 109.51959 * 297.75444 * 13 12 11 42 42 H 1.08998 * 109.52460 * 177.56121 * 13 12 11 43 43 H 0.97006 * 120.00229 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.46460 * 294.17841 * 24 10 9 45 45 H 1.08998 * 109.46666 * 54.14903 * 24 10 9 46 46 H 0.96697 * 113.99986 * 89.99974 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1999 0.4277 -0.0016 6 6 5.5702 0.6106 -0.0083 7 6 6.1003 1.8875 -0.0024 8 6 5.2624 2.9870 -0.0013 9 6 5.8437 4.3774 -0.0006 10 7 5.8113 4.9210 1.3637 11 6 6.2941 3.9320 2.3359 12 6 6.1104 4.4770 3.7541 13 6 6.8924 5.7855 3.8980 14 6 6.4038 6.7816 2.8428 15 1 5.3504 7.0047 3.0123 16 6 7.2089 8.0519 2.9389 17 1 7.7880 8.3896 2.0922 18 6 7.2063 8.7829 4.1080 19 7 7.9093 9.8911 4.1921 20 14 6.2042 8.1991 5.5724 21 1 7.0390 7.3114 6.4212 22 1 5.7614 9.3719 6.3683 23 1 5.0156 7.4498 5.0917 24 6 6.5789 6.1698 1.4510 25 6 3.8879 2.8107 -0.0003 26 8 3.0623 3.8913 0.0002 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8932 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7885 -0.5708 -0.0016 33 1 6.2281 -0.2459 -0.0141 34 1 7.1714 2.0263 -0.0032 35 1 6.8746 4.3404 -0.3526 36 1 5.2572 5.0168 -0.6604 37 1 5.7269 3.0076 2.2258 38 1 7.3507 3.7330 2.1573 39 1 6.4832 3.7491 4.4748 40 1 5.0523 4.6631 3.9382 41 1 7.9553 5.5926 3.7523 42 1 6.7294 6.1997 4.8930 43 1 7.9078 10.4053 5.0147 44 1 7.6343 5.9604 1.2765 45 1 6.2187 6.8710 0.6982 46 1 2.8229 4.2038 -0.8830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826862180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:26 Heat of formation + Delta-G solvation = -75.504979 kcal Electronic energy + Delta-G solvation = -25649.952670 eV Core-core repulsion = 22117.984949 eV Total energy + Delta-G solvation = -3531.967721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54936 -40.06842 -38.81958 -37.41559 -35.70136 -34.09589 -32.68981 -32.04786 -31.44951 -29.92856 -27.43533 -26.83681 -24.78179 -23.77603 -23.43724 -22.91543 -21.56068 -20.47670 -19.32135 -18.82892 -18.51055 -17.39890 -17.27503 -17.05406 -16.37502 -16.04406 -16.00858 -15.29998 -15.23181 -15.10755 -14.86437 -14.75422 -14.42547 -13.99827 -13.82432 -13.65708 -13.39165 -13.19197 -13.00576 -12.90809 -12.88580 -12.66586 -12.44974 -12.23446 -12.02936 -11.90247 -11.76555 -11.60522 -11.44568 -11.33411 -11.00978 -10.80568 -10.61589 -9.68358 -9.09890 -9.04759 -8.30584 -6.33237 0.22639 0.40221 1.28618 1.35791 1.47157 2.22331 2.32641 2.61161 3.05333 3.18476 3.35613 3.70770 3.93333 4.01460 4.06241 4.09518 4.16766 4.23875 4.26621 4.29602 4.37558 4.40856 4.44197 4.58498 4.62688 4.72287 4.76769 4.79746 4.88527 4.93836 4.96386 4.98014 5.04972 5.13091 5.18792 5.22527 5.29587 5.41392 5.44355 5.54266 5.63405 5.72298 5.76073 6.18283 6.28378 6.36403 6.37996 6.73777 6.97737 7.32414 8.86180 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.003416 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.121032 B = 8194.478934 C = 8580.465747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.330 6.330 4 C 0.087 3.913 5 C -0.195 4.195 6 C -0.084 4.084 7 C -0.141 4.141 8 C -0.077 4.077 9 C 0.102 3.898 10 N -0.538 5.538 11 C 0.068 3.932 12 C -0.115 4.115 13 C -0.120 4.120 14 C 0.021 3.979 15 H 0.019 0.981 16 C -0.516 4.516 17 H 0.036 0.964 18 C 0.015 3.985 19 N -0.949 5.949 20 Si 0.948 3.052 21 H -0.265 1.265 22 H -0.298 1.298 23 H -0.255 1.255 24 C 0.090 3.910 25 C 0.076 3.924 26 O -0.493 6.493 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.137 0.863 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.266 0.734 44 H 0.022 0.978 45 H 0.060 0.940 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.363 -26.550 -10.933 30.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.244 6.244 4 C 0.041 3.959 5 C -0.214 4.214 6 C -0.102 4.102 7 C -0.160 4.160 8 C -0.078 4.078 9 C -0.025 4.025 10 N -0.262 5.262 11 C -0.059 4.059 12 C -0.153 4.153 13 C -0.157 4.157 14 C 0.002 3.998 15 H 0.037 0.963 16 C -0.555 4.555 17 H 0.055 0.945 18 C -0.182 4.182 19 N -0.590 5.590 20 Si 0.776 3.224 21 H -0.191 1.191 22 H -0.226 1.226 23 H -0.179 1.179 24 C -0.038 4.038 25 C 0.030 3.970 26 O -0.303 6.303 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.155 0.845 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.078 0.922 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.932 -26.205 -10.121 30.144 hybrid contribution 0.683 0.472 0.090 0.835 sum -10.249 -25.733 -10.031 29.459 Atomic orbital electron populations 1.21804 0.91856 1.04121 1.02920 1.23078 0.96728 0.80869 1.02349 1.86139 1.18427 1.31195 1.88658 1.19585 0.83417 0.93826 0.99030 1.21441 0.94298 0.98171 1.07509 1.21239 0.94485 0.97540 0.96954 1.21137 1.00189 0.91761 1.02893 1.19945 0.91945 0.95768 1.00151 1.20896 0.99133 0.91893 0.90537 1.62018 1.55328 1.04401 1.04477 1.22007 0.97699 0.94702 0.91508 1.21628 1.00059 0.96640 0.96949 1.21903 0.99521 0.95937 0.98348 1.19052 0.95604 0.92423 0.92761 0.96274 1.21315 1.28125 1.06953 0.99063 0.94523 1.25784 0.96121 0.94666 1.01583 1.70038 1.43304 1.17095 1.28522 0.85839 0.80336 0.76864 0.79371 1.19147 1.22578 1.17902 1.21790 0.93997 0.90166 0.97820 1.17759 0.88548 0.84461 1.06269 1.84950 1.66328 1.45173 1.33841 0.92554 0.91902 0.87925 0.90516 0.91305 0.82812 0.82492 0.84526 0.93342 0.90005 0.90206 0.94806 0.90083 0.92828 0.92851 0.94814 0.92549 0.95989 0.92154 0.74982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.04 0.61 5.46 71.98 0.39 1.01 16 3 O -0.33 -7.56 9.92 -79.56 -0.79 -8.35 16 4 C 0.09 2.04 6.70 22.57 0.15 2.19 16 5 C -0.20 -3.41 9.04 22.35 0.20 -3.21 16 6 C -0.08 -1.37 10.04 22.28 0.22 -1.15 16 7 C -0.14 -2.84 8.64 22.27 0.19 -2.65 16 8 C -0.08 -1.94 3.69 -19.78 -0.07 -2.01 16 9 C 0.10 2.91 5.07 85.56 0.43 3.35 16 10 N -0.54 -19.12 4.80 -900.92 -4.32 -23.44 16 11 C 0.07 2.24 4.80 86.33 0.41 2.65 16 12 C -0.12 -4.14 6.09 30.65 0.19 -3.95 16 13 C -0.12 -5.27 4.74 30.67 0.15 -5.12 16 14 C 0.02 1.02 1.85 -11.49 -0.02 1.00 16 15 H 0.02 1.00 7.19 -2.39 -0.02 0.99 16 16 C -0.52 -30.37 9.14 25.60 0.23 -30.13 16 17 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 18 C 0.02 0.93 5.45 84.66 0.46 1.39 16 19 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 20 Si 0.95 47.40 24.36 68.60 1.67 49.07 16 21 H -0.27 -12.54 6.89 99.48 0.69 -11.86 16 22 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 23 H -0.25 -12.30 6.53 99.48 0.65 -11.65 16 24 C 0.09 3.76 4.65 86.33 0.40 4.17 16 25 C 0.08 2.02 6.69 22.57 0.15 2.17 16 26 O -0.49 -14.09 12.52 -79.54 -1.00 -15.09 16 27 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.78 7.66 -2.39 -0.02 0.76 16 31 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 32 H 0.15 1.78 6.30 -2.91 -0.02 1.76 16 33 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.14 2.40 8.03 -2.91 -0.02 2.38 16 35 H 0.05 1.29 7.94 -2.39 -0.02 1.27 16 36 H 0.08 2.28 7.85 -2.39 -0.02 2.26 16 37 H 0.08 2.43 6.03 -2.39 -0.01 2.42 16 38 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.03 1.55 3.37 -2.39 -0.01 1.55 16 43 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 44 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.06 2.56 8.12 -2.39 -0.02 2.54 16 46 H 0.39 7.78 9.06 -74.06 -0.67 7.11 16 Total: -1.00 -73.76 357.14 0.32 -73.44 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.22 Total: 16.04 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 4.24 Total: -31.24 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -4.03 Total: -83.88 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -1.79 Total: -23.44 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.67 Total: 49.07 kcal Total: -73.76 0.32 -73.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.064 kcal (2) G-P(sol) polarization free energy of solvation -73.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds