Wall clock time and date at job start Tue Mar 31 2020 09:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46779 * 2 1 4 4 C 1.35984 * 116.99925 * 179.97438 * 3 2 1 5 5 C 1.38716 * 119.99888 * 0.02562 * 4 3 2 6 6 C 1.38110 * 119.99960 * 179.97438 * 5 4 3 7 7 C 1.38725 * 120.00006 * 359.97438 * 6 5 4 8 8 O 1.35985 * 119.99765 * 180.02562 * 7 6 5 9 9 C 1.38672 * 119.99858 * 0.02950 * 7 6 5 10 10 C 1.50697 * 119.99718 * 179.97438 * 9 7 6 11 11 N 1.46903 * 109.47236 * 75.87076 * 10 9 7 12 12 C 1.46840 * 110.99931 * 75.49192 * 11 10 9 13 13 C 1.53042 * 109.52152 * 185.83842 * 12 11 10 14 14 C 1.53117 * 109.27825 * 300.82048 * 13 12 11 15 15 C 1.53112 * 109.16350 * 57.65161 * 14 13 12 16 16 H 1.09011 * 109.50279 * 62.28779 * 15 14 13 17 17 C 1.50694 * 109.50695 * 182.40375 * 15 14 13 18 18 H 1.08001 * 119.99985 * 120.00203 * 17 15 14 19 19 C 1.37877 * 119.99978 * 300.00364 * 17 15 14 20 20 N 1.31520 * 119.99847 * 179.97438 * 19 17 15 21 21 Si 1.86800 * 120.00314 * 359.97438 * 19 17 15 22 22 H 1.48499 * 109.47208 * 89.99790 * 21 19 17 23 23 H 1.48500 * 109.47272 * 210.00223 * 21 19 17 24 24 H 1.48503 * 109.46739 * 330.00031 * 21 19 17 25 25 C 1.46854 * 110.99783 * 199.69983 * 11 10 9 26 26 C 1.38152 * 120.00032 * 0.22106 * 9 7 6 27 27 H 1.08999 * 109.47095 * 60.00333 * 1 2 3 28 28 H 1.09004 * 109.46563 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47058 * 299.99451 * 1 2 3 30 30 H 1.08993 * 109.47323 * 239.99834 * 2 1 3 31 31 H 1.08999 * 109.47095 * 119.99667 * 2 1 3 32 32 H 1.08005 * 120.00283 * 359.97121 * 5 4 3 33 33 H 1.08008 * 119.99964 * 179.97438 * 6 5 4 34 34 H 0.96706 * 113.99873 * 275.04415 * 8 7 6 35 35 H 1.08995 * 109.47278 * 315.86471 * 10 9 7 36 36 H 1.09008 * 109.47185 * 195.86628 * 10 9 7 37 37 H 1.08999 * 109.46304 * 305.85204 * 12 11 10 38 38 H 1.09003 * 109.46743 * 65.82682 * 12 11 10 39 39 H 1.09003 * 109.50167 * 60.76148 * 13 12 11 40 40 H 1.09005 * 109.50178 * 180.87608 * 13 12 11 41 41 H 1.09004 * 109.52256 * 177.55905 * 14 13 12 42 42 H 1.09003 * 109.52288 * 297.68244 * 14 13 12 43 43 H 0.97007 * 119.99670 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.46100 * 294.17787 * 25 11 10 45 45 H 1.09002 * 109.46391 * 54.14336 * 25 11 10 46 46 H 1.07997 * 120.00085 * 179.72604 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1994 0.4255 0.0005 6 6 5.5686 0.6065 0.0005 7 6 6.0988 1.8884 0.0000 8 8 7.4469 2.0666 -0.0005 9 6 5.2540 2.9881 0.0001 10 6 5.8300 4.3807 0.0002 11 7 6.3295 4.7040 -1.3429 12 6 5.2212 5.0019 -2.2590 13 6 5.7660 5.1905 -3.6766 14 6 6.7787 6.3389 -3.6804 15 6 7.8972 6.0260 -2.6828 16 1 8.4200 5.1215 -2.9940 17 6 8.8674 7.1782 -2.6369 18 1 9.0375 7.7043 -1.7092 19 6 9.5380 7.5606 -3.7793 20 7 10.3844 8.5665 -3.7394 21 14 9.2445 6.6501 -5.3838 22 1 8.1287 7.2947 -6.1217 23 1 10.4768 6.6954 -6.2113 24 1 8.8948 5.2363 -5.0937 25 6 7.2907 5.8132 -1.2940 26 6 3.8844 2.8070 0.0054 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.7867 -0.5726 0.0006 33 1 6.2266 -0.2500 0.0009 34 1 7.8473 2.0413 0.8794 35 1 6.6504 4.4345 0.7157 36 1 5.0554 5.0943 0.2812 37 1 4.5105 4.1755 -2.2500 38 1 4.7201 5.9152 -1.9381 39 1 6.2552 4.2728 -4.0035 40 1 4.9450 5.4269 -4.3536 41 1 7.2015 6.4484 -4.6792 42 1 6.2807 7.2647 -3.3922 43 1 10.8565 8.8353 -4.5431 44 1 6.7799 6.7227 -0.9775 45 1 8.0831 5.5761 -0.5840 46 1 3.2265 3.6635 0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826862214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:21 Heat of formation + Delta-G solvation = -54.544402 kcal Electronic energy + Delta-G solvation = -25417.833310 eV Core-core repulsion = 21886.774507 eV Total energy + Delta-G solvation = -3531.058802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48494 -38.90534 -38.00147 -35.92495 -34.07272 -32.27260 -32.08764 -30.87055 -30.16881 -28.67974 -26.15074 -24.85886 -23.91374 -22.64646 -22.39134 -21.33091 -20.56194 -18.77730 -18.17993 -17.94273 -16.66117 -16.42245 -16.36587 -15.54584 -15.28664 -14.72612 -14.36547 -14.17244 -13.82325 -13.65155 -13.49722 -13.44621 -13.16027 -13.05969 -12.78408 -12.46490 -12.25246 -12.14697 -11.92341 -11.86763 -11.43239 -11.29353 -11.01744 -10.97859 -10.79013 -10.46026 -10.27825 -9.99560 -9.88777 -9.61330 -9.08142 -8.92806 -8.85322 -8.44795 -8.04440 -7.70593 -6.00995 -3.99406 1.17864 1.28833 2.96700 3.34286 3.45407 3.50575 3.52411 4.32223 4.49151 4.51901 4.57253 4.59197 4.69465 4.80910 4.87635 5.02815 5.12335 5.31370 5.36114 5.41645 5.42492 5.52753 5.58437 5.66408 5.66820 5.80325 5.89219 5.90328 6.05540 6.12213 6.18991 6.23619 6.36770 6.41010 6.45184 6.56734 6.59980 6.69703 6.89504 6.93128 7.22423 7.28695 7.49944 7.68376 7.75067 7.85178 7.95142 8.58778 9.02329 9.62530 11.12274 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.003269 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.474817 B = 8562.293185 C = 8971.918587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.116 3.884 5 C -0.197 4.197 6 C -0.113 4.113 7 C 0.097 3.903 8 O -0.478 6.478 9 C -0.054 4.054 10 C 0.099 3.901 11 N -0.527 5.527 12 C 0.063 3.937 13 C -0.119 4.119 14 C -0.122 4.122 15 C 0.021 3.979 16 H 0.036 0.964 17 C -0.511 4.511 18 H 0.072 0.928 19 C 0.070 3.930 20 N -0.904 5.904 21 Si 0.887 3.113 22 H -0.281 1.281 23 H -0.299 1.299 24 H -0.262 1.262 25 C 0.080 3.920 26 C -0.133 4.133 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.380 0.620 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.263 0.737 44 H 0.024 0.976 45 H 0.067 0.933 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 -18.176 9.972 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.071 3.929 5 C -0.216 4.216 6 C -0.132 4.132 7 C 0.051 3.949 8 O -0.286 6.286 9 C -0.055 4.055 10 C -0.028 4.028 11 N -0.252 5.252 12 C -0.065 4.065 13 C -0.156 4.156 14 C -0.159 4.159 15 C 0.002 3.998 16 H 0.054 0.946 17 C -0.550 4.550 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.543 5.543 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.227 1.227 24 H -0.187 1.187 25 C -0.046 4.046 26 C -0.152 4.152 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.234 0.766 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.974 -18.272 9.080 26.541 hybrid contribution -0.378 -0.002 -0.231 0.443 sum -17.351 -18.274 8.849 26.708 Atomic orbital electron populations 1.21775 0.92821 1.02763 1.03576 1.22750 0.95805 0.82197 1.01293 1.86081 1.19097 1.29027 1.88979 1.18869 0.82143 0.93955 0.97910 1.21024 0.93739 0.97909 1.08965 1.21242 0.94722 0.97004 1.00245 1.18133 0.83683 0.90946 1.02133 1.85042 1.16243 1.94651 1.32658 1.20024 0.91846 0.96017 0.97594 1.20841 0.98579 0.90797 0.92629 1.61910 1.14818 1.41982 1.06449 1.22018 0.92522 0.98384 0.93582 1.21640 0.98715 1.00255 0.95035 1.22022 0.97142 0.96635 1.00143 1.19150 0.92858 0.97601 0.90232 0.94553 1.21009 1.22248 1.14378 0.97347 0.90990 1.24976 0.94633 0.94638 0.98876 1.69908 1.27829 1.27498 1.29020 0.86830 0.76178 0.81472 0.83712 1.20795 1.22715 1.18733 1.22089 0.93229 0.89137 1.00164 1.20217 0.94145 0.94894 1.05950 0.91462 0.90459 0.91540 0.92097 0.92175 0.85560 0.85357 0.76555 0.89890 0.94258 0.91949 0.95528 0.91882 0.92947 0.93646 0.92628 0.92772 0.95749 0.91407 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.50 16 2 C 0.05 0.42 5.46 37.16 0.20 0.62 16 3 O -0.32 -3.56 10.14 -19.69 -0.20 -3.76 16 4 C 0.12 1.40 6.69 -39.24 -0.26 1.14 16 5 C -0.20 -2.13 9.03 -39.45 -0.36 -2.49 16 6 C -0.11 -1.31 9.98 -39.45 -0.39 -1.70 16 7 C 0.10 1.29 6.68 -39.24 -0.26 1.03 16 8 O -0.48 -6.46 12.81 -19.69 -0.25 -6.72 16 9 C -0.05 -0.73 4.83 -104.49 -0.50 -1.24 16 10 C 0.10 1.46 4.75 -4.98 -0.02 1.44 16 11 N -0.53 -9.54 4.58 -236.11 -1.08 -10.62 16 12 C 0.06 1.09 5.29 -3.84 -0.02 1.07 16 13 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 14 C -0.12 -2.74 4.73 -26.61 -0.13 -2.87 16 15 C 0.02 0.51 1.85 -91.70 -0.17 0.34 16 16 H 0.04 0.95 7.21 -51.92 -0.37 0.57 16 17 C -0.51 -14.57 9.15 -34.44 -0.31 -14.89 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 19 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 20 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 21 Si 0.89 22.77 24.35 -169.99 -4.14 18.63 16 22 H -0.28 -7.01 6.89 56.52 0.39 -6.63 16 23 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 24 H -0.26 -6.57 6.53 56.52 0.37 -6.20 16 25 C 0.08 1.67 4.65 -3.83 -0.02 1.65 16 26 C -0.13 -1.70 8.99 -39.45 -0.35 -2.06 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 31 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.13 1.05 6.29 -52.48 -0.33 0.72 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.38 3.23 9.07 45.56 0.41 3.65 16 35 H 0.08 1.16 7.63 -51.93 -0.40 0.76 16 36 H 0.04 0.54 7.82 -51.92 -0.41 0.14 16 37 H 0.06 1.01 6.99 -51.93 -0.36 0.64 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 1.08 3.34 -51.93 -0.17 0.91 16 42 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.40 7.93 -51.93 -0.41 0.98 16 46 H 0.13 1.57 8.00 -52.49 -0.42 1.15 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -33.31 359.36 -8.62 -41.93 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.66 Total: 1.39 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.48 Total: -18.92 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.31 Total: -37.97 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.45 Total: -10.48 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.31 -8.62 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.610 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds