Wall clock time and date at job start Tue Mar 31 2020 09:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46779 * 2 1 4 4 C 1.35984 * 116.99925 * 179.97438 * 3 2 1 5 5 C 1.38716 * 119.99888 * 0.02562 * 4 3 2 6 6 C 1.38110 * 119.99960 * 179.97438 * 5 4 3 7 7 C 1.38725 * 120.00006 * 359.97438 * 6 5 4 8 8 O 1.35985 * 119.99765 * 180.02562 * 7 6 5 9 9 C 1.38672 * 119.99858 * 0.02950 * 7 6 5 10 10 C 1.50697 * 119.99718 * 179.97438 * 9 7 6 11 11 N 1.46903 * 109.47236 * 75.87076 * 10 9 7 12 12 C 1.46840 * 110.99931 * 75.49192 * 11 10 9 13 13 C 1.53042 * 109.52152 * 185.83842 * 12 11 10 14 14 C 1.53117 * 109.27825 * 300.82048 * 13 12 11 15 15 C 1.53112 * 109.16350 * 57.65161 * 14 13 12 16 16 H 1.09011 * 109.50279 * 62.28779 * 15 14 13 17 17 C 1.50694 * 109.50695 * 182.40375 * 15 14 13 18 18 H 1.08001 * 119.99985 * 120.00203 * 17 15 14 19 19 C 1.37877 * 119.99978 * 300.00364 * 17 15 14 20 20 N 1.31520 * 119.99847 * 179.97438 * 19 17 15 21 21 Si 1.86800 * 120.00314 * 359.97438 * 19 17 15 22 22 H 1.48499 * 109.47208 * 89.99790 * 21 19 17 23 23 H 1.48500 * 109.47272 * 210.00223 * 21 19 17 24 24 H 1.48503 * 109.46739 * 330.00031 * 21 19 17 25 25 C 1.46854 * 110.99783 * 199.69983 * 11 10 9 26 26 C 1.38152 * 120.00032 * 0.22106 * 9 7 6 27 27 H 1.08999 * 109.47095 * 60.00333 * 1 2 3 28 28 H 1.09004 * 109.46563 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47058 * 299.99451 * 1 2 3 30 30 H 1.08993 * 109.47323 * 239.99834 * 2 1 3 31 31 H 1.08999 * 109.47095 * 119.99667 * 2 1 3 32 32 H 1.08005 * 120.00283 * 359.97121 * 5 4 3 33 33 H 1.08008 * 119.99964 * 179.97438 * 6 5 4 34 34 H 0.96706 * 113.99873 * 275.04415 * 8 7 6 35 35 H 1.08995 * 109.47278 * 315.86471 * 10 9 7 36 36 H 1.09008 * 109.47185 * 195.86628 * 10 9 7 37 37 H 1.08999 * 109.46304 * 305.85204 * 12 11 10 38 38 H 1.09003 * 109.46743 * 65.82682 * 12 11 10 39 39 H 1.09003 * 109.50167 * 60.76148 * 13 12 11 40 40 H 1.09005 * 109.50178 * 180.87608 * 13 12 11 41 41 H 1.09004 * 109.52256 * 177.55905 * 14 13 12 42 42 H 1.09003 * 109.52288 * 297.68244 * 14 13 12 43 43 H 0.97007 * 119.99670 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.46100 * 294.17787 * 25 11 10 45 45 H 1.09002 * 109.46391 * 54.14336 * 25 11 10 46 46 H 1.07997 * 120.00085 * 179.72604 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1994 0.4255 0.0005 6 6 5.5686 0.6065 0.0005 7 6 6.0988 1.8884 0.0000 8 8 7.4469 2.0666 -0.0005 9 6 5.2540 2.9881 0.0001 10 6 5.8300 4.3807 0.0002 11 7 6.3295 4.7040 -1.3429 12 6 5.2212 5.0019 -2.2590 13 6 5.7660 5.1905 -3.6766 14 6 6.7787 6.3389 -3.6804 15 6 7.8972 6.0260 -2.6828 16 1 8.4200 5.1215 -2.9940 17 6 8.8674 7.1782 -2.6369 18 1 9.0375 7.7043 -1.7092 19 6 9.5380 7.5606 -3.7793 20 7 10.3844 8.5665 -3.7394 21 14 9.2445 6.6501 -5.3838 22 1 8.1287 7.2947 -6.1217 23 1 10.4768 6.6954 -6.2113 24 1 8.8948 5.2363 -5.0937 25 6 7.2907 5.8132 -1.2940 26 6 3.8844 2.8070 0.0054 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.7867 -0.5726 0.0006 33 1 6.2266 -0.2500 0.0009 34 1 7.8473 2.0413 0.8794 35 1 6.6504 4.4345 0.7157 36 1 5.0554 5.0943 0.2812 37 1 4.5105 4.1755 -2.2500 38 1 4.7201 5.9152 -1.9381 39 1 6.2552 4.2728 -4.0035 40 1 4.9450 5.4269 -4.3536 41 1 7.2015 6.4484 -4.6792 42 1 6.2807 7.2647 -3.3922 43 1 10.8565 8.8353 -4.5431 44 1 6.7799 6.7227 -0.9775 45 1 8.0831 5.5761 -0.5840 46 1 3.2265 3.6635 0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826862214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:20 Heat of formation + Delta-G solvation = -78.226737 kcal Electronic energy + Delta-G solvation = -25418.860253 eV Core-core repulsion = 21886.774507 eV Total energy + Delta-G solvation = -3532.085745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37697 -40.04920 -39.23803 -36.86825 -35.69986 -34.12883 -32.68304 -32.06894 -31.92314 -29.57788 -27.34431 -26.83103 -24.75007 -23.72318 -23.54364 -22.90619 -21.60840 -20.48291 -19.12134 -18.91228 -18.67439 -17.38689 -17.15554 -16.98934 -16.33369 -15.99157 -15.76853 -15.59351 -15.29127 -14.86944 -14.77171 -14.73194 -14.28071 -14.16565 -13.86219 -13.73564 -13.62420 -13.21400 -12.97560 -12.92166 -12.80174 -12.66352 -12.43409 -12.16384 -12.13758 -11.90498 -11.75400 -11.49983 -11.43481 -11.21912 -10.99870 -10.80062 -10.61219 -9.89708 -9.12494 -8.92843 -8.29872 -6.32409 0.26547 0.39266 1.29128 1.36049 1.47513 2.25877 2.33203 2.59655 3.06074 3.20559 3.46949 3.76365 3.83460 4.01658 4.06327 4.08980 4.14129 4.17557 4.25206 4.36014 4.39769 4.44018 4.48332 4.60846 4.63819 4.70036 4.78328 4.81195 4.89346 4.95876 4.96707 5.01939 5.04398 5.12485 5.18755 5.21880 5.25846 5.35076 5.45381 5.56228 5.64038 5.70003 5.74340 6.18839 6.28894 6.37501 6.45973 6.74621 7.04628 7.33142 8.86888 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.003269 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.474817 B = 8562.293185 C = 8971.918587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.333 6.333 4 C 0.110 3.890 5 C -0.190 4.190 6 C -0.114 4.114 7 C 0.082 3.918 8 O -0.499 6.499 9 C -0.067 4.067 10 C 0.102 3.898 11 N -0.535 5.535 12 C 0.065 3.935 13 C -0.113 4.113 14 C -0.121 4.121 15 C 0.022 3.978 16 H 0.020 0.980 17 C -0.515 4.515 18 H 0.036 0.964 19 C 0.014 3.986 20 N -0.949 5.949 21 Si 0.949 3.051 22 H -0.266 1.266 23 H -0.299 1.299 24 H -0.253 1.253 25 C 0.093 3.907 26 C -0.141 4.141 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.398 0.602 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.033 0.967 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.051 0.949 43 H 0.265 0.735 44 H 0.019 0.981 45 H 0.061 0.939 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.491 -20.903 9.645 30.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.065 3.935 5 C -0.209 4.209 6 C -0.133 4.133 7 C 0.037 3.963 8 O -0.310 6.310 9 C -0.069 4.069 10 C -0.025 4.025 11 N -0.260 5.260 12 C -0.063 4.063 13 C -0.151 4.151 14 C -0.159 4.159 15 C 0.003 3.997 16 H 0.038 0.962 17 C -0.554 4.554 18 H 0.054 0.946 19 C -0.182 4.182 20 N -0.590 5.590 21 Si 0.777 3.223 22 H -0.193 1.193 23 H -0.227 1.227 24 H -0.177 1.177 25 C -0.035 4.035 26 C -0.160 4.160 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.255 0.745 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.365 -21.018 8.781 29.897 hybrid contribution 0.334 0.808 0.000 0.874 sum -19.031 -20.210 8.781 29.116 Atomic orbital electron populations 1.21809 0.91692 1.04131 1.03087 1.23065 0.96776 0.80795 1.02352 1.86076 1.18557 1.31314 1.88821 1.18970 0.82844 0.93985 0.97670 1.21321 0.93306 0.98909 1.07313 1.21454 0.95383 0.96858 0.99574 1.18338 0.83535 0.91686 1.02741 1.84978 1.16700 1.94786 1.34574 1.19889 0.92327 0.95260 0.99389 1.20843 0.98941 0.92015 0.90742 1.61837 1.15200 1.40253 1.08664 1.22029 0.92372 0.99419 0.92430 1.21607 0.98513 0.98137 0.96830 1.21916 0.97289 0.98143 0.98506 1.19043 0.92804 0.94803 0.93092 0.96204 1.21321 1.23059 1.15103 0.95919 0.94587 1.25795 0.94437 0.95451 1.02558 1.70045 1.29344 1.29429 1.30184 0.85826 0.76381 0.80656 0.79450 1.19260 1.22660 1.17742 1.21771 0.93843 0.90120 0.97728 1.20273 0.93838 0.95678 1.06242 0.92132 0.88158 0.91854 0.91251 0.90774 0.82860 0.83495 0.74496 0.89710 0.93306 0.90145 0.94900 0.92536 0.90063 0.94802 0.93000 0.92585 0.96319 0.92062 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 71.98 0.74 -0.63 16 2 C 0.04 0.55 5.46 71.98 0.39 0.94 16 3 O -0.33 -6.70 10.14 -93.37 -0.95 -7.65 16 4 C 0.11 2.40 6.69 22.49 0.15 2.55 16 5 C -0.19 -3.52 9.03 22.35 0.20 -3.32 16 6 C -0.11 -2.34 9.98 22.36 0.22 -2.11 16 7 C 0.08 2.06 6.68 22.49 0.15 2.21 16 8 O -0.50 -12.99 12.81 -93.38 -1.20 -14.19 16 9 C -0.07 -1.75 4.83 -19.78 -0.10 -1.84 16 10 C 0.10 2.89 4.75 85.56 0.41 3.30 16 11 N -0.54 -18.80 4.58 -900.91 -4.12 -22.92 16 12 C 0.07 2.12 5.29 86.33 0.46 2.57 16 13 C -0.11 -4.01 6.09 30.65 0.19 -3.83 16 14 C -0.12 -5.31 4.73 30.67 0.15 -5.17 16 15 C 0.02 1.07 1.85 -11.49 -0.02 1.05 16 16 H 0.02 1.04 7.21 -2.38 -0.02 1.02 16 17 C -0.52 -30.30 9.15 25.60 0.23 -30.06 16 18 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 19 C 0.01 0.87 5.45 84.65 0.46 1.33 16 20 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 21 Si 0.95 47.30 24.35 68.60 1.67 48.97 16 22 H -0.27 -12.58 6.89 99.48 0.69 -11.90 16 23 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 24 H -0.25 -12.12 6.53 99.48 0.65 -11.47 16 25 C 0.09 3.87 4.65 86.32 0.40 4.28 16 26 C -0.14 -3.37 8.99 22.35 0.20 -3.17 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 31 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 32 H 0.15 1.93 6.29 -2.91 -0.02 1.91 16 33 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.40 6.45 9.07 -74.05 -0.67 5.78 16 35 H 0.08 2.33 7.63 -2.39 -0.02 2.31 16 36 H 0.05 1.28 7.82 -2.38 -0.02 1.27 16 37 H 0.08 2.37 6.99 -2.39 -0.02 2.35 16 38 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.03 1.55 3.34 -2.38 -0.01 1.55 16 42 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.27 15.91 8.31 -92.70 -0.77 15.13 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 46 H 0.13 2.99 8.00 -2.91 -0.02 2.97 16 Total: -1.00 -72.65 359.36 0.16 -72.49 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.22 Total: 15.66 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 4.23 Total: -31.91 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -3.82 Total: -83.36 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -2.14 Total: -21.84 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.67 Total: 48.97 kcal Total: -72.65 0.16 -72.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.739 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds