Wall clock time and date at job start Tue Mar 31 2020 10:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99774 * 2 1 4 4 C 1.52995 * 109.46941 * 286.61094 * 3 2 1 5 5 O 1.42900 * 109.47533 * 66.68651 * 4 3 2 6 6 C 1.42902 * 114.00565 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47316 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99770 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00025 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00187 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00018 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47023 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47345 * 119.99991 * 11 9 7 14 14 H 1.48502 * 109.46715 * 239.99721 * 11 9 7 15 15 C 1.46903 * 110.99829 * 123.95036 * 2 1 3 16 16 C 1.53003 * 109.46597 * 77.41356 * 15 2 1 17 17 O 1.42898 * 110.27140 * 293.66299 * 16 15 2 18 18 C 1.54344 * 110.30347 * 55.74208 * 16 15 2 19 19 C 1.54346 * 102.39505 * 92.57265 * 18 16 15 20 20 C 1.51366 * 105.16967 * 26.34777 * 19 18 16 21 21 C 1.38499 * 130.39690 * 162.81815 * 20 19 18 22 22 C 1.38101 * 120.21643 * 179.97438 * 21 20 19 23 23 C 1.38245 * 119.93719 * 359.97438 * 22 21 20 24 24 C 1.38101 * 119.93607 * 0.02562 * 23 22 21 25 25 C 1.38303 * 120.28180 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47048 * 300.52889 * 1 2 3 27 27 H 1.08994 * 109.47325 * 60.52909 * 1 2 3 28 28 H 1.09004 * 109.47039 * 180.53086 * 1 2 3 29 29 H 1.08998 * 109.46917 * 46.61249 * 3 2 1 30 30 H 1.09000 * 109.46944 * 166.61342 * 3 2 1 31 31 H 1.09008 * 109.47263 * 186.68349 * 4 3 2 32 32 H 1.08993 * 109.47349 * 306.68116 * 4 3 2 33 33 H 1.09000 * 109.46338 * 299.99792 * 6 5 4 34 34 H 1.08995 * 109.46802 * 59.99718 * 6 5 4 35 35 H 0.97004 * 120.00622 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47015 * 317.41706 * 15 2 1 37 37 H 1.09001 * 109.46988 * 197.41305 * 15 2 1 38 38 H 0.96700 * 113.99613 * 300.70162 * 17 16 15 39 39 H 1.09000 * 110.82147 * 210.79954 * 18 16 15 40 40 H 1.09000 * 110.82121 * 334.14892 * 18 16 15 41 41 H 1.08997 * 110.30557 * 145.27051 * 19 18 16 42 42 H 1.09001 * 110.30257 * 267.32374 * 19 18 16 43 43 H 1.08001 * 119.88818 * 359.96458 * 21 20 19 44 44 H 1.08003 * 120.02665 * 179.97438 * 22 21 20 45 45 H 1.08001 * 120.03538 * 179.97438 * 23 22 21 46 46 H 1.08003 * 119.89357 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7932 1.9953 -1.3823 5 8 0.3958 2.1633 -1.6293 6 6 0.0957 2.7425 -2.9008 7 6 -1.3979 2.8719 -3.0539 8 1 -2.0526 2.5442 -2.2599 9 6 -1.9287 3.4077 -4.2081 10 7 -1.1316 3.8063 -5.1752 11 14 -3.7801 3.5688 -4.3976 12 1 -4.4494 3.0524 -3.1767 13 1 -4.1355 4.9976 -4.5908 14 1 -4.2270 2.7838 -5.5763 15 6 1.9954 -0.7659 1.1377 16 6 1.8847 -2.2626 0.8397 17 8 0.5119 -2.6532 0.7699 18 6 2.6055 -2.6002 -0.4827 19 6 4.0206 -2.9834 -0.0002 20 6 3.8350 -3.4784 1.4181 21 6 4.6736 -4.2315 2.2230 22 6 4.2876 -4.5692 3.5052 23 6 3.0605 -4.1542 3.9882 24 6 2.2229 -3.4032 3.1873 25 6 2.6058 -3.0640 1.9023 26 1 -0.3633 0.5220 0.8852 27 1 -0.3634 0.5056 -0.8946 28 1 -0.3633 -1.0277 0.0095 29 1 1.4666 1.9636 0.7468 30 1 3.0590 1.3524 0.2379 31 1 2.2878 2.9660 -1.4187 32 1 2.2204 1.3412 -2.1422 33 1 0.5550 3.7287 -2.9681 34 1 0.4878 2.1041 -3.6924 35 1 -1.5049 4.1836 -5.9871 36 1 1.4192 -0.5300 2.0323 37 1 3.0411 -0.5040 1.2993 38 1 0.0133 -2.4846 1.5812 39 1 2.1252 -3.4417 -0.9819 40 1 2.6388 -1.7304 -1.1388 41 1 4.4322 -3.7750 -0.6262 42 1 4.6745 -2.1114 -0.0156 43 1 5.6325 -4.5558 1.8464 44 1 4.9438 -5.1570 4.1300 45 1 2.7569 -4.4178 4.9905 46 1 1.2646 -3.0790 3.5654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829377286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:54 Heat of formation + Delta-G solvation = -63.098926 kcal Electronic energy + Delta-G solvation = -25258.676187 eV Core-core repulsion = 21727.246433 eV Total energy + Delta-G solvation = -3531.429754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76110 -38.17102 -36.93754 -35.34098 -34.70970 -32.67622 -31.34713 -29.78504 -29.01990 -28.03694 -26.94489 -25.37049 -23.41181 -22.79680 -22.21554 -21.32633 -20.75117 -19.98832 -17.42229 -16.48402 -16.18953 -16.03167 -15.72157 -15.58240 -15.31940 -14.82378 -14.51349 -14.22642 -14.02576 -13.83532 -13.51487 -13.24063 -13.00825 -12.81758 -12.53705 -12.41962 -11.85744 -11.81911 -11.69717 -11.49921 -11.28903 -11.20191 -11.13715 -11.02531 -10.79955 -10.73616 -10.70746 -10.59599 -10.07741 -9.59630 -9.07558 -9.03824 -8.79743 -8.73877 -8.11701 -7.99761 -6.08628 -4.10013 1.08771 1.14797 3.30561 3.37104 3.43244 3.47980 3.94985 4.22555 4.25228 4.37100 4.57847 4.73771 4.75266 4.86784 4.92331 4.98695 5.10793 5.24947 5.28106 5.30255 5.35317 5.46135 5.50519 5.57278 5.68062 5.72639 5.81884 5.93502 6.00654 6.09824 6.10623 6.13035 6.19211 6.25055 6.26325 6.38284 6.42030 6.43588 6.74367 6.99926 7.16721 7.36820 7.41617 7.48922 7.58477 7.81716 8.18851 8.61485 9.03887 9.54884 11.02955 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.029206 B = 0.002709 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.473648 B =10332.520505 C =10617.522943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.525 5.525 3 C 0.058 3.942 4 C 0.068 3.932 5 O -0.391 6.391 6 C 0.194 3.806 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.906 3.094 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.037 3.963 16 C 0.183 3.817 17 O -0.541 6.541 18 C -0.099 4.099 19 C -0.084 4.084 20 C -0.084 4.084 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.098 4.098 25 C -0.122 4.122 26 H 0.011 0.989 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.002 0.998 34 H 0.006 0.994 35 H 0.263 0.737 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.370 0.630 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.157 -15.360 17.019 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.249 5.249 3 C -0.070 4.070 4 C -0.010 4.010 5 O -0.311 6.311 6 C 0.120 3.880 7 C -0.550 4.550 8 H 0.084 0.916 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.733 3.267 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.208 1.208 15 C -0.092 4.092 16 C 0.142 3.858 17 O -0.346 6.346 18 C -0.136 4.136 19 C -0.121 4.121 20 C -0.084 4.084 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.116 4.116 25 C -0.123 4.123 26 H 0.029 0.971 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.217 0.783 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.334 -15.714 15.923 25.546 hybrid contribution -1.053 0.815 1.107 1.732 sum 11.280 -14.900 17.030 25.284 Atomic orbital electron populations 1.23010 0.85419 1.02856 1.02886 1.61914 1.09915 1.12784 1.40245 1.22229 0.98803 0.88654 0.97285 1.22241 0.85995 0.97481 0.95314 1.87821 1.20074 1.83248 1.39929 1.20178 0.96491 0.91848 0.79462 1.21085 0.90993 1.40769 1.02138 0.91610 1.24944 0.98811 0.95358 0.95435 1.69971 1.34845 1.42182 1.06782 0.86314 0.84490 0.77684 0.78194 1.19507 1.20931 1.20847 1.22665 1.00512 0.93443 0.92603 1.20737 0.81251 0.90892 0.92969 1.86642 1.21041 1.86063 1.40890 1.22266 0.92235 1.03560 0.95544 1.21126 0.98325 1.01027 0.91649 1.20687 0.94418 0.96728 0.96562 1.20653 0.99498 0.98884 0.93959 1.21050 0.96689 1.00179 0.95598 1.21011 0.94603 0.98975 0.99710 1.20531 0.99673 0.98537 0.92898 1.21252 0.96671 0.99397 0.95008 0.97064 0.87415 0.90162 0.94327 0.90813 0.94360 0.93591 0.97970 0.97663 0.92761 0.94674 0.90540 0.78321 0.90360 0.87558 0.90390 0.89830 0.86196 0.85966 0.85959 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.91 60.07 0.54 0.62 16 2 N -0.52 -7.81 3.50 -242.91 -0.85 -8.66 16 3 C 0.06 0.88 5.53 -3.82 -0.02 0.86 16 4 C 0.07 1.25 6.24 37.15 0.23 1.48 16 5 O -0.39 -9.17 7.36 -35.23 -0.26 -9.43 16 6 C 0.19 5.31 5.69 36.00 0.20 5.52 16 7 C -0.51 -14.99 9.43 -34.44 -0.32 -15.32 16 8 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 11 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.04 0.44 4.38 -3.82 -0.02 0.43 16 16 C 0.18 2.14 1.02 -90.74 -0.09 2.05 16 17 O -0.54 -6.74 10.30 -35.23 -0.36 -7.11 16 18 C -0.10 -1.17 6.21 -25.32 -0.16 -1.33 16 19 C -0.08 -0.82 6.76 -26.85 -0.18 -1.00 16 20 C -0.08 -0.87 6.14 -104.12 -0.64 -1.51 16 21 C -0.11 -1.02 10.04 -39.54 -0.40 -1.42 16 22 C -0.12 -0.98 10.05 -39.63 -0.40 -1.38 16 23 C -0.12 -1.07 10.05 -39.63 -0.40 -1.47 16 24 C -0.10 -0.95 9.96 -39.61 -0.39 -1.34 16 25 C -0.12 -1.33 5.14 -104.19 -0.53 -1.87 16 26 H 0.01 0.18 8.09 -51.93 -0.42 -0.24 16 27 H 0.11 2.23 5.42 -51.93 -0.28 1.95 16 28 H 0.08 1.26 5.37 -51.93 -0.28 0.98 16 29 H 0.04 0.61 8.00 -51.93 -0.42 0.19 16 30 H 0.07 0.92 7.63 -51.93 -0.40 0.52 16 31 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.04 0.41 7.97 -51.93 -0.41 0.00 16 37 H 0.08 0.87 7.59 -51.93 -0.39 0.48 16 38 H 0.37 3.45 9.01 45.56 0.41 3.86 16 39 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 40 H 0.11 1.40 7.03 -51.93 -0.37 1.04 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -32.13 367.75 -9.65 -41.77 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.75 Total: 1.43 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -2.68 Total: -14.17 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.11 Total: -34.95 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.62 Total: -16.54 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.13 -9.65 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829377286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.326 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds