Wall clock time and date at job start Tue Mar 31 2020 10:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99774 * 2 1 4 4 C 1.52995 * 109.46941 * 286.61094 * 3 2 1 5 5 O 1.42900 * 109.47533 * 66.68651 * 4 3 2 6 6 C 1.42902 * 114.00565 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47316 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99770 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00025 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00187 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00018 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47023 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47345 * 119.99991 * 11 9 7 14 14 H 1.48502 * 109.46715 * 239.99721 * 11 9 7 15 15 C 1.46903 * 110.99829 * 123.95036 * 2 1 3 16 16 C 1.53003 * 109.46597 * 77.41356 * 15 2 1 17 17 O 1.42898 * 110.27140 * 293.66299 * 16 15 2 18 18 C 1.54344 * 110.30347 * 55.74208 * 16 15 2 19 19 C 1.54346 * 102.39505 * 92.57265 * 18 16 15 20 20 C 1.51366 * 105.16967 * 26.34777 * 19 18 16 21 21 C 1.38499 * 130.39690 * 162.81815 * 20 19 18 22 22 C 1.38101 * 120.21643 * 179.97438 * 21 20 19 23 23 C 1.38245 * 119.93719 * 359.97438 * 22 21 20 24 24 C 1.38101 * 119.93607 * 0.02562 * 23 22 21 25 25 C 1.38303 * 120.28180 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47048 * 300.52889 * 1 2 3 27 27 H 1.08994 * 109.47325 * 60.52909 * 1 2 3 28 28 H 1.09004 * 109.47039 * 180.53086 * 1 2 3 29 29 H 1.08998 * 109.46917 * 46.61249 * 3 2 1 30 30 H 1.09000 * 109.46944 * 166.61342 * 3 2 1 31 31 H 1.09008 * 109.47263 * 186.68349 * 4 3 2 32 32 H 1.08993 * 109.47349 * 306.68116 * 4 3 2 33 33 H 1.09000 * 109.46338 * 299.99792 * 6 5 4 34 34 H 1.08995 * 109.46802 * 59.99718 * 6 5 4 35 35 H 0.97004 * 120.00622 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47015 * 317.41706 * 15 2 1 37 37 H 1.09001 * 109.46988 * 197.41305 * 15 2 1 38 38 H 0.96700 * 113.99613 * 300.70162 * 17 16 15 39 39 H 1.09000 * 110.82147 * 210.79954 * 18 16 15 40 40 H 1.09000 * 110.82121 * 334.14892 * 18 16 15 41 41 H 1.08997 * 110.30557 * 145.27051 * 19 18 16 42 42 H 1.09001 * 110.30257 * 267.32374 * 19 18 16 43 43 H 1.08001 * 119.88818 * 359.96458 * 21 20 19 44 44 H 1.08003 * 120.02665 * 179.97438 * 22 21 20 45 45 H 1.08001 * 120.03538 * 179.97438 * 23 22 21 46 46 H 1.08003 * 119.89357 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7932 1.9953 -1.3823 5 8 0.3958 2.1633 -1.6293 6 6 0.0957 2.7425 -2.9008 7 6 -1.3979 2.8719 -3.0539 8 1 -2.0526 2.5442 -2.2599 9 6 -1.9287 3.4077 -4.2081 10 7 -1.1316 3.8063 -5.1752 11 14 -3.7801 3.5688 -4.3976 12 1 -4.4494 3.0524 -3.1767 13 1 -4.1355 4.9976 -4.5908 14 1 -4.2270 2.7838 -5.5763 15 6 1.9954 -0.7659 1.1377 16 6 1.8847 -2.2626 0.8397 17 8 0.5119 -2.6532 0.7699 18 6 2.6055 -2.6002 -0.4827 19 6 4.0206 -2.9834 -0.0002 20 6 3.8350 -3.4784 1.4181 21 6 4.6736 -4.2315 2.2230 22 6 4.2876 -4.5692 3.5052 23 6 3.0605 -4.1542 3.9882 24 6 2.2229 -3.4032 3.1873 25 6 2.6058 -3.0640 1.9023 26 1 -0.3633 0.5220 0.8852 27 1 -0.3634 0.5056 -0.8946 28 1 -0.3633 -1.0277 0.0095 29 1 1.4666 1.9636 0.7468 30 1 3.0590 1.3524 0.2379 31 1 2.2878 2.9660 -1.4187 32 1 2.2204 1.3412 -2.1422 33 1 0.5550 3.7287 -2.9681 34 1 0.4878 2.1041 -3.6924 35 1 -1.5049 4.1836 -5.9871 36 1 1.4192 -0.5300 2.0323 37 1 3.0411 -0.5040 1.2993 38 1 0.0133 -2.4846 1.5812 39 1 2.1252 -3.4417 -0.9819 40 1 2.6388 -1.7304 -1.1388 41 1 4.4322 -3.7750 -0.6262 42 1 4.6745 -2.1114 -0.0156 43 1 5.6325 -4.5558 1.8464 44 1 4.9438 -5.1570 4.1300 45 1 2.7569 -4.4178 4.9905 46 1 1.2646 -3.0790 3.5654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829377286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:52 Heat of formation + Delta-G solvation = -83.455759 kcal Electronic energy + Delta-G solvation = -25259.558926 eV Core-core repulsion = 21727.246433 eV Total energy + Delta-G solvation = -3532.312493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.56315 -39.34927 -38.30343 -36.68881 -35.52741 -34.86045 -32.08931 -31.16900 -29.85396 -29.13234 -28.94031 -26.47394 -24.71978 -24.26745 -23.55784 -22.23901 -21.81476 -20.89352 -18.61926 -18.27455 -17.51337 -17.22541 -17.03047 -16.75038 -16.39912 -16.07942 -15.74726 -15.46800 -15.23261 -15.20215 -14.58185 -14.48449 -14.13495 -13.75690 -13.67897 -13.54325 -13.40225 -13.05799 -12.99599 -12.80887 -12.59154 -12.48000 -12.42224 -12.35669 -12.28745 -12.15245 -11.88466 -11.73709 -11.61571 -11.22243 -10.88491 -10.65068 -10.10674 -9.75617 -9.50643 -9.19106 -8.31170 -6.42833 0.39339 0.47648 1.39558 1.41051 1.55505 2.34970 2.75095 2.94444 3.02765 3.24658 3.36412 3.47013 3.71262 3.87184 4.04481 4.14694 4.18264 4.21108 4.34267 4.37219 4.43413 4.51781 4.58610 4.62165 4.62579 4.67443 4.76675 4.84142 4.87427 4.92946 4.96427 5.03006 5.11523 5.17036 5.21343 5.25646 5.33861 5.55945 5.56433 5.59327 5.60763 5.71463 5.98616 6.09148 6.11907 6.21452 6.56500 6.78949 6.85464 7.29112 8.81449 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.029206 B = 0.002709 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.473648 B =10332.520505 C =10617.522943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.533 5.533 3 C 0.067 3.933 4 C 0.058 3.942 5 O -0.397 6.397 6 C 0.210 3.790 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.005 3.995 10 N -0.931 5.931 11 Si 0.981 3.019 12 H -0.264 1.264 13 H -0.272 1.272 14 H -0.273 1.273 15 C 0.043 3.957 16 C 0.185 3.815 17 O -0.559 6.559 18 C -0.102 4.102 19 C -0.078 4.078 20 C -0.099 4.099 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.109 4.109 25 C -0.139 4.139 26 H 0.014 0.986 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.042 0.958 33 H -0.017 1.017 34 H -0.018 1.018 35 H 0.270 0.730 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.381 0.619 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.484 -16.315 18.898 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.061 4.061 4 C -0.019 4.019 5 O -0.317 6.317 6 C 0.135 3.865 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.194 4.194 10 N -0.571 5.571 11 Si 0.804 3.196 12 H -0.188 1.188 13 H -0.197 1.197 14 H -0.198 1.198 15 C -0.085 4.085 16 C 0.144 3.856 17 O -0.367 6.367 18 C -0.140 4.140 19 C -0.115 4.115 20 C -0.099 4.099 21 C -0.138 4.138 22 C -0.136 4.136 23 C -0.147 4.147 24 C -0.127 4.127 25 C -0.139 4.139 26 H 0.032 0.968 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.001 0.999 34 H -0.001 1.001 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.230 0.770 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.156 0.844 44 H 0.165 0.835 45 H 0.163 0.837 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.682 -16.678 17.825 27.509 hybrid contribution -1.057 1.047 0.576 1.596 sum 11.624 -15.631 18.401 26.797 Atomic orbital electron populations 1.22774 0.86788 1.02721 1.00762 1.61840 1.08757 1.12898 1.42192 1.22199 1.00889 0.88468 0.94550 1.22571 0.83452 0.98328 0.97554 1.87838 1.23337 1.82811 1.37698 1.19764 0.95727 0.90411 0.80603 1.21393 0.91939 1.41868 1.02740 0.92087 1.25953 1.04397 0.94325 0.94689 1.70077 1.37330 1.42325 1.07360 0.85162 0.77647 0.78244 0.78510 1.18811 1.19679 1.19779 1.22669 1.01014 0.93260 0.91544 1.20686 0.80972 0.90712 0.93263 1.86603 1.21776 1.86190 1.42090 1.22219 0.93939 1.02255 0.95588 1.21069 0.96891 1.01713 0.91779 1.20835 0.94762 0.97501 0.96819 1.20936 1.00101 0.98468 0.94247 1.21422 0.96934 0.99688 0.95557 1.21349 0.94503 0.98266 1.00598 1.20783 1.00534 0.98743 0.92631 1.21190 0.96965 1.00356 0.95437 0.96792 0.91677 0.89377 0.94646 0.87251 0.93476 0.93992 0.99926 1.00065 0.92128 0.93923 0.89309 0.76967 0.91750 0.89265 0.89384 0.89013 0.84440 0.83472 0.83737 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 8.91 127.69 1.14 1.72 16 2 N -0.53 -15.70 3.50 -922.43 -3.23 -18.94 16 3 C 0.07 1.96 5.53 86.30 0.48 2.43 16 4 C 0.06 2.19 6.24 71.98 0.45 2.64 16 5 O -0.40 -19.35 7.36 -148.98 -1.10 -20.44 16 6 C 0.21 11.99 5.69 71.23 0.41 12.40 16 7 C -0.54 -32.65 9.43 25.60 0.24 -32.40 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.00 0.27 5.46 84.65 0.46 0.73 16 10 N -0.93 -56.86 13.29 21.44 0.28 -56.57 16 11 Si 0.98 45.09 29.54 68.60 2.03 47.12 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 C 0.04 0.99 4.38 86.30 0.38 1.37 16 16 C 0.18 4.21 1.02 -10.87 -0.01 4.20 16 17 O -0.56 -13.81 10.30 -148.98 -1.54 -15.34 16 18 C -0.10 -2.45 6.21 31.51 0.20 -2.25 16 19 C -0.08 -1.43 6.76 30.52 0.21 -1.23 16 20 C -0.10 -1.91 6.14 -19.54 -0.12 -2.03 16 21 C -0.12 -1.90 10.04 22.30 0.22 -1.67 16 22 C -0.12 -1.63 10.05 22.24 0.22 -1.41 16 23 C -0.13 -1.87 10.05 22.24 0.22 -1.64 16 24 C -0.11 -1.88 9.96 22.25 0.22 -1.66 16 25 C -0.14 -2.83 5.14 -19.58 -0.10 -2.93 16 26 H 0.01 0.44 8.09 -2.38 -0.02 0.42 16 27 H 0.06 2.81 5.42 -2.39 -0.01 2.80 16 28 H 0.09 2.80 5.37 -2.39 -0.01 2.79 16 29 H 0.04 1.08 8.00 -2.39 -0.02 1.06 16 30 H 0.11 2.45 7.63 -2.39 -0.02 2.44 16 31 H 0.05 1.68 8.14 -2.38 -0.02 1.67 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 34 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 35 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 36 H 0.04 0.93 7.97 -2.39 -0.02 0.91 16 37 H 0.09 1.83 7.59 -2.39 -0.02 1.81 16 38 H 0.38 6.88 9.01 -74.06 -0.67 6.22 16 39 H 0.06 1.67 8.11 -2.39 -0.02 1.66 16 40 H 0.09 2.41 7.03 -2.39 -0.02 2.39 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 43 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 46 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -70.43 367.75 1.36 -69.07 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.29 Total: 16.83 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 4.61 Total: -21.73 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -2.95 Total: -75.51 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -2.63 Total: -35.79 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -70.43 1.36 -69.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829377286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.386 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds