Wall clock time and date at job start Tue Mar 31 2020 10:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99815 * 2 1 4 4 C 1.52998 * 109.47330 * 286.29522 * 3 2 1 5 5 O 1.42902 * 109.46914 * 67.75006 * 4 3 2 6 6 C 1.42902 * 113.99876 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46861 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00127 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99597 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99746 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00201 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47091 * 90.00179 * 11 9 7 13 13 H 1.48505 * 109.46859 * 210.00272 * 11 9 7 14 14 H 1.48497 * 109.47009 * 330.00226 * 11 9 7 15 15 C 1.46906 * 110.99786 * 123.95227 * 2 1 3 16 16 C 1.53001 * 109.46776 * 78.81249 * 15 2 1 17 17 O 1.42893 * 110.34802 * 53.16624 * 16 15 2 18 18 C 1.54344 * 110.30557 * 291.03362 * 16 15 2 19 19 C 1.54346 * 102.39514 * 214.73426 * 18 16 15 20 20 C 1.51368 * 105.16948 * 26.34417 * 19 18 16 21 21 C 1.38499 * 130.39460 * 163.09917 * 20 19 18 22 22 C 1.38099 * 120.21859 * 180.15268 * 21 20 19 23 23 C 1.38260 * 119.93481 * 359.54498 * 22 21 20 24 24 C 1.38106 * 119.93074 * 0.22462 * 23 22 21 25 25 C 1.38216 * 109.75987 * 342.81760 * 20 19 18 26 26 H 1.09004 * 109.47090 * 289.39398 * 1 2 3 27 27 H 1.08998 * 109.46973 * 49.39637 * 1 2 3 28 28 H 1.09001 * 109.46867 * 169.39413 * 1 2 3 29 29 H 1.08997 * 109.47142 * 46.29978 * 3 2 1 30 30 H 1.09007 * 109.46748 * 166.29384 * 3 2 1 31 31 H 1.09000 * 109.47155 * 187.75306 * 4 3 2 32 32 H 1.08999 * 109.46705 * 307.75712 * 4 3 2 33 33 H 1.09003 * 109.46874 * 300.00540 * 6 5 4 34 34 H 1.09000 * 109.47057 * 60.00402 * 6 5 4 35 35 H 0.97000 * 119.99948 * 179.97438 * 10 9 7 36 36 H 1.09005 * 109.47166 * 318.81452 * 15 2 1 37 37 H 1.08998 * 109.46989 * 198.81405 * 15 2 1 38 38 H 0.96699 * 114.00441 * 57.04182 * 17 16 15 39 39 H 1.09006 * 110.82329 * 332.95775 * 18 16 15 40 40 H 1.08996 * 110.82573 * 96.30798 * 18 16 15 41 41 H 1.09000 * 110.30173 * 267.42614 * 19 18 16 42 42 H 1.08996 * 110.30612 * 145.26600 * 19 18 16 43 43 H 1.08004 * 119.89059 * 359.69389 * 21 20 19 44 44 H 1.08001 * 120.03589 * 179.74662 * 22 21 20 45 45 H 1.08001 * 120.03106 * 180.20528 * 23 22 21 46 46 H 1.08002 * 119.88846 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8003 1.9926 -1.3845 5 8 0.4053 2.1830 -1.6289 6 6 0.1118 2.7606 -2.9026 7 6 -1.3797 2.9157 -3.0521 8 1 -2.0377 2.6039 -2.2545 9 6 -1.9042 3.4546 -4.2078 10 7 -3.2059 3.5895 -4.3385 11 14 -0.7661 3.9932 -5.5876 12 1 -0.5407 2.8560 -6.5156 13 1 -1.3857 5.1214 -6.3284 14 1 0.5327 4.4304 -5.0158 15 6 1.9954 -0.7660 1.1377 16 6 1.9169 -2.2617 0.8254 17 8 2.5536 -2.5429 -0.4226 18 6 0.4451 -2.7254 0.7922 19 6 0.5353 -4.1558 1.3650 20 6 1.7663 -4.1528 2.2458 21 6 2.1633 -5.0356 3.2364 22 6 3.3442 -4.8266 3.9212 23 6 4.1381 -3.7379 3.6112 24 6 3.7463 -2.8592 2.6205 25 6 2.5601 -3.0645 1.9359 26 1 -0.3633 0.3413 0.9694 27 1 -0.3633 0.6688 -0.7802 28 1 -0.3633 -1.0101 -0.1891 29 1 1.4628 1.9650 0.7429 30 1 3.0578 1.3528 0.2435 31 1 2.3112 2.9546 -1.4264 32 1 2.2145 1.3279 -2.1426 33 1 0.5878 3.7385 -2.9764 34 1 0.4910 2.1115 -3.6919 35 1 -3.5750 3.9690 -5.1513 36 1 1.4036 -0.5489 2.0269 37 1 3.0338 -0.4858 1.3150 38 1 3.4778 -2.2616 -0.4648 39 1 -0.1750 -2.0923 1.4270 40 1 0.0654 -2.7371 -0.2294 41 1 0.6494 -4.8797 0.5581 42 1 -0.3519 -4.3833 1.9558 43 1 1.5436 -5.8862 3.4792 44 1 3.6489 -5.5146 4.6960 45 1 5.0636 -3.5748 4.1435 46 1 4.3668 -2.0088 2.3792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829377292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:58 Heat of formation + Delta-G solvation = -53.679432 kcal Electronic energy + Delta-G solvation = -25235.227941 eV Core-core repulsion = 21704.206646 eV Total energy + Delta-G solvation = -3531.021294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77148 -38.21363 -37.06200 -35.53594 -34.42662 -32.62997 -31.53828 -30.10923 -29.07473 -28.12699 -27.55371 -25.72793 -23.18083 -22.71880 -21.80373 -21.28100 -20.81141 -20.24776 -17.51055 -16.86249 -16.26379 -15.91471 -15.79045 -15.51129 -15.31415 -14.91353 -14.45883 -14.41770 -14.17996 -13.83403 -13.58748 -13.27092 -13.10460 -12.88042 -12.74992 -12.47224 -12.28512 -11.90632 -11.88344 -11.44409 -11.37441 -11.28518 -11.21425 -11.08636 -10.81434 -10.67615 -10.65166 -10.39336 -9.85720 -9.81402 -9.14811 -9.10389 -8.84104 -8.77074 -8.41554 -8.04822 -6.10571 -4.09363 1.07024 1.13781 3.26676 3.33373 3.34981 3.46693 3.92187 4.10889 4.37060 4.43902 4.47926 4.64032 4.71983 4.76835 4.83381 4.86149 5.07299 5.20984 5.21461 5.26877 5.34914 5.38766 5.52710 5.56754 5.63656 5.67642 5.78331 5.84537 5.85882 5.94640 5.99496 6.01327 6.05021 6.09728 6.22164 6.23856 6.30331 6.43049 6.62484 6.73501 6.91936 7.03730 7.29797 7.35672 7.63309 7.71886 8.03410 8.67645 8.99947 9.49148 11.02385 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030047 B = 0.002750 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.636197 B =10179.247995 C =10602.196380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.522 5.522 3 C 0.060 3.940 4 C 0.063 3.937 5 O -0.377 6.377 6 C 0.168 3.832 7 C -0.517 4.517 8 H 0.082 0.918 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.876 3.124 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.030 3.970 16 C 0.185 3.815 17 O -0.529 6.529 18 C -0.107 4.107 19 C -0.086 4.086 20 C -0.077 4.077 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.127 4.127 24 C -0.097 4.097 25 C -0.127 4.127 26 H 0.015 0.985 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.001 0.999 34 H 0.000 1.000 35 H 0.266 0.734 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.372 0.628 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.143 -15.490 16.043 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 N -0.246 5.246 3 C -0.068 4.068 4 C -0.015 4.015 5 O -0.296 6.296 6 C 0.093 3.907 7 C -0.555 4.555 8 H 0.100 0.900 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.703 3.297 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.191 1.191 15 C -0.099 4.099 16 C 0.144 3.856 17 O -0.334 6.334 18 C -0.144 4.144 19 C -0.123 4.123 20 C -0.077 4.077 21 C -0.132 4.132 22 C -0.132 4.132 23 C -0.145 4.145 24 C -0.115 4.115 25 C -0.128 4.128 26 H 0.033 0.967 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.219 0.781 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.402 -15.926 15.463 26.460 hybrid contribution 1.135 1.020 0.060 1.527 sum 15.537 -14.905 15.523 26.543 Atomic orbital electron populations 1.23144 0.85828 1.03889 1.01943 1.61859 1.09475 1.12624 1.40659 1.22182 0.98892 0.88769 0.96974 1.22339 0.85639 0.97609 0.95883 1.87817 1.20572 1.82885 1.38365 1.20593 0.97592 0.91479 0.81057 1.20885 0.89370 1.41622 1.03650 0.90040 1.24771 0.95046 0.95241 0.97940 1.69878 1.10760 1.45108 1.27707 0.86845 0.81375 0.78884 0.82611 1.19901 1.20882 1.19139 1.22841 1.00208 0.93958 0.92886 1.20457 0.92386 0.91254 0.81532 1.86613 1.29179 1.84185 1.33378 1.22498 0.93904 0.94969 1.03069 1.21162 0.94962 0.98424 0.97746 1.20657 0.96860 0.94571 0.95621 1.20657 0.97072 0.99251 0.96227 1.21063 0.94679 0.97846 0.99656 1.21033 0.99979 0.95281 0.98252 1.20661 0.95608 0.99310 0.95894 1.21227 0.95570 0.97771 0.98187 0.96655 0.86669 0.91246 0.94134 0.90726 0.94178 0.93263 0.98135 0.98276 0.92405 0.93835 0.91252 0.78149 0.89705 0.88468 0.89720 0.90488 0.86209 0.85945 0.85936 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 8.45 60.07 0.51 0.49 16 2 N -0.52 -7.65 4.38 -242.91 -1.06 -8.71 16 3 C 0.06 0.86 5.52 -3.83 -0.02 0.84 16 4 C 0.06 1.11 6.23 37.16 0.23 1.34 16 5 O -0.38 -8.51 7.31 -35.23 -0.26 -8.76 16 6 C 0.17 4.24 4.76 36.01 0.17 4.41 16 7 C -0.52 -15.25 9.99 -34.44 -0.34 -15.59 16 8 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 11 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 15 C 0.03 0.35 4.27 -3.82 -0.02 0.34 16 16 C 0.19 2.15 1.02 -90.74 -0.09 2.06 16 17 O -0.53 -6.75 12.81 -35.23 -0.45 -7.20 16 18 C -0.11 -1.24 4.35 -25.32 -0.11 -1.35 16 19 C -0.09 -0.87 6.77 -26.85 -0.18 -1.05 16 20 C -0.08 -0.82 6.14 -104.21 -0.64 -1.46 16 21 C -0.11 -1.05 10.04 -39.54 -0.40 -1.45 16 22 C -0.11 -0.95 10.05 -39.62 -0.40 -1.35 16 23 C -0.13 -1.07 10.05 -39.62 -0.40 -1.47 16 24 C -0.10 -0.90 9.69 -39.53 -0.38 -1.29 16 25 C -0.13 -1.37 5.28 -104.20 -0.55 -1.92 16 26 H 0.01 0.23 7.92 -51.93 -0.41 -0.18 16 27 H 0.12 2.35 4.95 -51.93 -0.26 2.09 16 28 H 0.07 1.05 4.63 -51.93 -0.24 0.81 16 29 H 0.04 0.61 8.03 -51.93 -0.42 0.19 16 30 H 0.07 0.86 7.61 -51.93 -0.40 0.47 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 34 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 35 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.04 0.53 7.66 -51.93 -0.40 0.13 16 37 H 0.07 0.71 7.04 -51.93 -0.37 0.34 16 38 H 0.37 3.62 9.07 45.56 0.41 4.03 16 39 H 0.08 0.95 6.89 -51.93 -0.36 0.60 16 40 H 0.10 1.25 7.05 -51.93 -0.37 0.88 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.12 0.91 7.69 -52.49 -0.40 0.50 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -32.72 361.16 -9.46 -42.17 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.51 Total: 2.48 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.72 Total: -15.43 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.29 Total: -35.56 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.71 Total: -15.96 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.72 -9.46 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829377292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.505 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds