Wall clock time and date at job start Tue Mar 31 2020 10:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99815 * 2 1 4 4 C 1.52998 * 109.47330 * 286.29522 * 3 2 1 5 5 O 1.42902 * 109.46914 * 67.75006 * 4 3 2 6 6 C 1.42902 * 113.99876 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46861 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00127 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99597 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99746 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00201 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47091 * 90.00179 * 11 9 7 13 13 H 1.48505 * 109.46859 * 210.00272 * 11 9 7 14 14 H 1.48497 * 109.47009 * 330.00226 * 11 9 7 15 15 C 1.46906 * 110.99786 * 123.95227 * 2 1 3 16 16 C 1.53001 * 109.46776 * 78.81249 * 15 2 1 17 17 O 1.42893 * 110.34802 * 53.16624 * 16 15 2 18 18 C 1.54344 * 110.30557 * 291.03362 * 16 15 2 19 19 C 1.54346 * 102.39514 * 214.73426 * 18 16 15 20 20 C 1.51368 * 105.16948 * 26.34417 * 19 18 16 21 21 C 1.38499 * 130.39460 * 163.09917 * 20 19 18 22 22 C 1.38099 * 120.21859 * 180.15268 * 21 20 19 23 23 C 1.38260 * 119.93481 * 359.54498 * 22 21 20 24 24 C 1.38106 * 119.93074 * 0.22462 * 23 22 21 25 25 C 1.38216 * 109.75987 * 342.81760 * 20 19 18 26 26 H 1.09004 * 109.47090 * 289.39398 * 1 2 3 27 27 H 1.08998 * 109.46973 * 49.39637 * 1 2 3 28 28 H 1.09001 * 109.46867 * 169.39413 * 1 2 3 29 29 H 1.08997 * 109.47142 * 46.29978 * 3 2 1 30 30 H 1.09007 * 109.46748 * 166.29384 * 3 2 1 31 31 H 1.09000 * 109.47155 * 187.75306 * 4 3 2 32 32 H 1.08999 * 109.46705 * 307.75712 * 4 3 2 33 33 H 1.09003 * 109.46874 * 300.00540 * 6 5 4 34 34 H 1.09000 * 109.47057 * 60.00402 * 6 5 4 35 35 H 0.97000 * 119.99948 * 179.97438 * 10 9 7 36 36 H 1.09005 * 109.47166 * 318.81452 * 15 2 1 37 37 H 1.08998 * 109.46989 * 198.81405 * 15 2 1 38 38 H 0.96699 * 114.00441 * 57.04182 * 17 16 15 39 39 H 1.09006 * 110.82329 * 332.95775 * 18 16 15 40 40 H 1.08996 * 110.82573 * 96.30798 * 18 16 15 41 41 H 1.09000 * 110.30173 * 267.42614 * 19 18 16 42 42 H 1.08996 * 110.30612 * 145.26600 * 19 18 16 43 43 H 1.08004 * 119.89059 * 359.69389 * 21 20 19 44 44 H 1.08001 * 120.03589 * 179.74662 * 22 21 20 45 45 H 1.08001 * 120.03106 * 180.20528 * 23 22 21 46 46 H 1.08002 * 119.88846 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8003 1.9926 -1.3845 5 8 0.4053 2.1830 -1.6289 6 6 0.1118 2.7606 -2.9026 7 6 -1.3797 2.9157 -3.0521 8 1 -2.0377 2.6039 -2.2545 9 6 -1.9042 3.4546 -4.2078 10 7 -3.2059 3.5895 -4.3385 11 14 -0.7661 3.9932 -5.5876 12 1 -0.5407 2.8560 -6.5156 13 1 -1.3857 5.1214 -6.3284 14 1 0.5327 4.4304 -5.0158 15 6 1.9954 -0.7660 1.1377 16 6 1.9169 -2.2617 0.8254 17 8 2.5536 -2.5429 -0.4226 18 6 0.4451 -2.7254 0.7922 19 6 0.5353 -4.1558 1.3650 20 6 1.7663 -4.1528 2.2458 21 6 2.1633 -5.0356 3.2364 22 6 3.3442 -4.8266 3.9212 23 6 4.1381 -3.7379 3.6112 24 6 3.7463 -2.8592 2.6205 25 6 2.5601 -3.0645 1.9359 26 1 -0.3633 0.3413 0.9694 27 1 -0.3633 0.6688 -0.7802 28 1 -0.3633 -1.0101 -0.1891 29 1 1.4628 1.9650 0.7429 30 1 3.0578 1.3528 0.2435 31 1 2.3112 2.9546 -1.4264 32 1 2.2145 1.3279 -2.1426 33 1 0.5878 3.7385 -2.9764 34 1 0.4910 2.1115 -3.6919 35 1 -3.5750 3.9690 -5.1513 36 1 1.4036 -0.5489 2.0269 37 1 3.0338 -0.4858 1.3150 38 1 3.4778 -2.2616 -0.4648 39 1 -0.1750 -2.0923 1.4270 40 1 0.0654 -2.7371 -0.2294 41 1 0.6494 -4.8797 0.5581 42 1 -0.3519 -4.3833 1.9558 43 1 1.5436 -5.8862 3.4792 44 1 3.6489 -5.5146 4.6960 45 1 5.0636 -3.5748 4.1435 46 1 4.3668 -2.0088 2.3792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829377292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:57 Heat of formation + Delta-G solvation = -76.632480 kcal Electronic energy + Delta-G solvation = -25236.223260 eV Core-core repulsion = 21704.206646 eV Total energy + Delta-G solvation = -3532.016613 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56577 -39.38794 -38.31059 -36.78527 -35.25727 -34.82404 -32.33873 -31.40180 -30.01705 -29.50988 -29.01818 -26.81866 -24.25343 -23.88684 -23.52511 -22.18437 -21.84563 -21.11514 -19.03181 -18.37247 -17.48271 -17.26544 -16.97943 -16.50311 -16.31899 -16.14752 -15.83562 -15.45489 -15.33500 -15.06424 -14.67431 -14.58923 -14.20166 -14.07301 -13.87484 -13.85038 -13.33751 -13.20436 -13.10990 -12.83378 -12.64432 -12.47425 -12.35054 -12.23027 -12.14926 -11.85210 -11.81621 -11.76363 -11.53168 -11.24482 -10.91932 -10.78053 -10.21380 -9.77742 -9.53499 -9.21044 -8.36370 -6.43416 0.38160 0.46853 1.33548 1.36244 1.46902 2.29856 2.74198 2.92488 2.96530 3.11290 3.32288 3.57573 3.63512 3.85799 3.97395 4.16786 4.17757 4.19520 4.29579 4.37097 4.39768 4.49586 4.53598 4.57795 4.63932 4.66165 4.68914 4.73321 4.79398 4.82997 4.90143 4.96359 5.05496 5.06054 5.08419 5.14913 5.24078 5.39095 5.53109 5.58598 5.59960 5.71601 5.95012 6.07703 6.09877 6.20974 6.60433 6.78078 6.92813 7.21070 8.80565 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030047 B = 0.002750 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.636197 B =10179.247995 C =10602.196380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.530 5.530 3 C 0.064 3.936 4 C 0.054 3.946 5 O -0.396 6.396 6 C 0.179 3.821 7 C -0.540 4.540 8 H 0.031 0.969 9 C 0.012 3.988 10 N -0.943 5.943 11 Si 0.954 3.046 12 H -0.262 1.262 13 H -0.274 1.274 14 H -0.246 1.246 15 C 0.035 3.965 16 C 0.188 3.812 17 O -0.549 6.549 18 C -0.113 4.113 19 C -0.082 4.082 20 C -0.097 4.097 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.130 4.130 24 C -0.103 4.103 25 C -0.141 4.141 26 H 0.017 0.983 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.010 0.990 34 H 0.006 0.994 35 H 0.272 0.728 36 H 0.041 0.959 37 H 0.094 0.906 38 H 0.383 0.617 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.135 0.865 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.532 -15.855 16.688 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.253 5.253 3 C -0.064 4.064 4 C -0.023 4.023 5 O -0.316 6.316 6 C 0.103 3.897 7 C -0.578 4.578 8 H 0.050 0.950 9 C -0.186 4.186 10 N -0.582 5.582 11 Si 0.776 3.224 12 H -0.187 1.187 13 H -0.199 1.199 14 H -0.169 1.169 15 C -0.093 4.093 16 C 0.147 3.853 17 O -0.355 6.355 18 C -0.150 4.150 19 C -0.119 4.119 20 C -0.097 4.097 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.148 4.148 24 C -0.121 4.121 25 C -0.142 4.142 26 H 0.035 0.965 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.165 0.835 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.813 -16.302 16.135 29.041 hybrid contribution 0.058 1.052 -0.009 1.053 sum 17.872 -15.251 16.126 28.496 Atomic orbital electron populations 1.22934 0.87554 1.03079 1.00437 1.61827 1.08022 1.13100 1.42377 1.22229 1.01082 0.88250 0.94806 1.22683 0.82959 0.98907 0.97739 1.87847 1.24117 1.82737 1.36855 1.20279 0.94584 0.92140 0.82666 1.21153 0.91525 1.42206 1.02891 0.95028 1.25826 0.96929 0.94844 1.00989 1.70034 1.13187 1.46005 1.28986 0.85626 0.79506 0.78875 0.78441 1.18674 1.19883 1.16899 1.22870 1.01248 0.93682 0.91534 1.20401 0.92128 0.91168 0.81636 1.86583 1.30259 1.84469 1.34202 1.22467 0.94395 0.96252 1.01888 1.21102 0.95809 0.97172 0.97816 1.20802 0.97042 0.95399 0.96504 1.20925 0.97826 0.99497 0.95917 1.21435 0.94071 0.98164 0.99724 1.21396 1.00785 0.94785 0.97812 1.20918 0.95194 1.00141 0.95878 1.21180 0.96543 0.97981 0.98481 0.96475 0.90767 0.90716 0.94922 0.86729 0.92393 0.93145 0.97206 0.97647 0.91890 0.94052 0.88810 0.76811 0.89906 0.90484 0.90171 0.89313 0.84749 0.83468 0.83468 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 8.45 127.69 1.08 1.34 16 2 N -0.53 -15.13 4.38 -922.42 -4.04 -19.17 16 3 C 0.06 1.74 5.52 86.30 0.48 2.22 16 4 C 0.05 1.82 6.23 71.98 0.45 2.27 16 5 O -0.40 -18.15 7.31 -148.98 -1.09 -19.24 16 6 C 0.18 9.06 4.76 71.24 0.34 9.40 16 7 C -0.54 -33.05 9.99 25.60 0.26 -32.80 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 9 C 0.01 0.71 5.47 84.65 0.46 1.18 16 10 N -0.94 -59.83 13.96 21.45 0.30 -59.53 16 11 Si 0.95 44.05 27.47 68.60 1.88 45.93 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 15 C 0.03 0.77 4.27 86.30 0.37 1.14 16 16 C 0.19 4.24 1.02 -10.87 -0.01 4.23 16 17 O -0.55 -13.64 12.81 -148.98 -1.91 -15.55 16 18 C -0.11 -2.68 4.35 31.51 0.14 -2.55 16 19 C -0.08 -1.66 6.77 30.52 0.21 -1.46 16 20 C -0.10 -1.97 6.14 -19.60 -0.12 -2.09 16 21 C -0.12 -2.06 10.04 22.30 0.22 -1.84 16 22 C -0.12 -1.61 10.05 22.24 0.22 -1.38 16 23 C -0.13 -1.78 10.05 22.24 0.22 -1.56 16 24 C -0.10 -1.67 9.69 22.30 0.22 -1.45 16 25 C -0.14 -2.84 5.28 -19.59 -0.10 -2.95 16 26 H 0.02 0.55 7.92 -2.39 -0.02 0.53 16 27 H 0.07 3.21 4.95 -2.39 -0.01 3.19 16 28 H 0.07 2.41 4.63 -2.39 -0.01 2.39 16 29 H 0.03 0.95 8.03 -2.39 -0.02 0.93 16 30 H 0.11 2.22 7.61 -2.38 -0.02 2.20 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 34 H 0.01 0.28 7.57 -2.39 -0.02 0.27 16 35 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 36 H 0.04 0.95 7.66 -2.38 -0.02 0.94 16 37 H 0.09 1.62 7.04 -2.39 -0.02 1.60 16 38 H 0.38 6.94 9.07 -74.06 -0.67 6.27 16 39 H 0.08 1.94 6.89 -2.38 -0.02 1.92 16 40 H 0.08 2.11 7.05 -2.39 -0.02 2.09 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 46 H 0.14 1.63 7.69 -2.91 -0.02 1.60 16 Total: -1.00 -73.50 361.16 -0.18 -73.68 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.25 Total: 20.19 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 4.43 Total: -26.31 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -3.74 Total: -78.70 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -3.00 Total: -34.79 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -73.50 -0.18 -73.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829377292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.955 kcal (2) G-P(sol) polarization free energy of solvation -73.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds