Wall clock time and date at job start Tue Mar 31 2020 10:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36005 * 116.99662 * 2 1 4 4 C 1.38696 * 119.97660 * 180.02562 * 3 2 1 5 5 C 1.38116 * 120.01631 * 180.02562 * 4 3 2 6 6 C 1.38857 * 119.97853 * 359.97438 * 5 4 3 7 7 N 1.39944 * 120.01524 * 180.02562 * 6 5 4 8 8 C 1.46498 * 120.00243 * 0.02562 * 7 6 5 9 9 C 1.53006 * 109.46687 * 269.99780 * 8 7 6 10 10 O 1.42895 * 109.47036 * 65.00210 * 9 8 7 11 11 C 1.42901 * 113.99948 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47372 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00134 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00542 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00126 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47261 * 90.00206 * 16 14 12 18 18 H 1.48500 * 109.47278 * 210.00457 * 16 14 12 19 19 H 1.48506 * 109.46831 * 329.99852 * 16 14 12 20 20 C 1.46504 * 119.99713 * 180.02562 * 7 6 5 21 21 C 1.53000 * 109.47034 * 269.99825 * 20 7 6 22 22 C 1.53000 * 117.50116 * 243.74671 * 21 20 7 23 23 C 1.52997 * 117.49810 * 175.08511 * 21 20 7 24 24 C 1.38857 * 119.96635 * 0.27275 * 6 5 4 25 25 C 1.38114 * 119.97882 * 359.44997 * 24 6 5 26 26 H 1.08998 * 109.46510 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46808 * 300.00087 * 1 2 3 28 28 H 1.08994 * 109.46911 * 60.00622 * 1 2 3 29 29 H 1.07997 * 119.99681 * 0.02562 * 4 3 2 30 30 H 1.07998 * 120.00635 * 179.97438 * 5 4 3 31 31 H 1.08992 * 109.47311 * 150.00023 * 8 7 6 32 32 H 1.08997 * 109.46828 * 29.99667 * 8 7 6 33 33 H 1.09001 * 109.47002 * 184.99687 * 9 8 7 34 34 H 1.08993 * 109.46955 * 305.00124 * 9 8 7 35 35 H 1.08995 * 109.47392 * 299.99575 * 11 10 9 36 36 H 1.09003 * 109.47182 * 59.99587 * 11 10 9 37 37 H 0.96998 * 120.00821 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.47086 * 29.99987 * 20 7 6 39 39 H 1.08997 * 109.46787 * 150.00302 * 20 7 6 40 40 H 1.09001 * 115.54983 * 29.42196 * 21 20 7 41 41 H 1.09001 * 117.49532 * 0.02562 * 22 21 20 42 42 H 1.09001 * 117.49674 * 145.02241 * 22 21 20 43 43 H 1.09005 * 117.50224 * 214.97835 * 23 21 20 44 44 H 1.09001 * 117.49884 * 0.02562 * 23 21 20 45 45 H 1.08001 * 120.01095 * 179.70031 * 24 6 5 46 46 H 1.07997 * 119.99594 * 180.27227 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0594 2.5142 0.0000 6 6 3.3034 3.6789 0.0005 7 7 3.9387 4.9258 0.0005 8 6 5.4017 5.0026 -0.0006 9 6 5.9120 5.0288 1.4416 10 8 5.5990 3.7894 2.0802 11 6 6.0351 3.7090 3.4386 12 6 5.6541 2.3677 4.0101 13 1 5.1316 1.6482 3.3971 14 6 5.9736 2.0584 5.3152 15 7 6.6103 2.9342 6.0616 16 14 5.5019 0.3954 6.0234 17 1 6.6018 -0.5736 5.7861 18 1 5.2655 0.5281 7.4834 19 1 4.2632 -0.0902 5.3636 20 6 3.1407 6.1545 0.0017 21 6 2.8618 6.5828 -1.4404 22 6 3.4457 7.9181 -1.9063 23 6 1.9415 7.7861 -1.6546 24 6 1.9168 3.6058 0.0063 25 6 1.2906 2.3748 -0.0001 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 4.0194 0.3780 -0.0014 30 1 5.1379 2.5701 0.0000 31 1 5.7175 5.9105 -0.5143 32 1 5.8107 4.1330 -0.5151 33 1 6.9922 5.1751 1.4422 34 1 5.4343 5.8464 1.9812 35 1 7.1178 3.8277 3.4803 36 1 5.5603 4.4994 4.0201 37 1 6.8348 2.7168 6.9799 38 1 2.1968 5.9742 0.5162 39 1 3.6897 6.9437 0.5153 40 1 2.8107 5.7741 -2.1695 41 1 4.0288 8.4912 -1.1855 42 1 3.7783 7.9879 -2.9420 43 1 1.2853 7.7694 -2.5247 44 1 1.5351 8.2729 -0.7680 45 1 1.3281 4.5113 0.0116 46 1 0.2121 2.3176 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831592334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:19 Heat of formation + Delta-G solvation = -22.395950 kcal Electronic energy + Delta-G solvation = -25422.398885 eV Core-core repulsion = 21892.734144 eV Total energy + Delta-G solvation = -3529.664741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.84311 -38.57756 -37.12342 -36.55828 -34.68019 -32.65170 -30.98820 -29.68796 -29.00859 -27.00859 -26.99294 -25.25858 -22.65237 -22.47683 -22.29443 -21.78995 -20.94034 -19.81032 -17.95390 -16.65211 -16.50342 -16.29942 -15.52803 -15.41253 -15.33743 -15.05588 -14.49632 -14.45187 -14.16262 -13.84830 -13.50968 -13.24835 -12.88910 -12.56742 -12.48108 -12.18379 -12.07019 -11.74077 -11.71066 -11.65505 -11.56926 -11.18434 -11.01825 -10.78924 -10.73711 -10.59177 -10.55882 -10.27197 -10.03265 -9.95597 -9.04574 -8.93383 -8.77466 -8.48362 -8.12152 -6.61577 -6.05948 -4.06563 1.83612 2.09601 3.31778 3.34283 3.39198 3.46497 3.67097 3.72774 4.30712 4.39957 4.64299 4.77296 4.84021 4.89478 5.10318 5.21827 5.24670 5.27491 5.30446 5.30977 5.44860 5.47253 5.51234 5.56422 5.58803 5.69930 5.75265 5.82193 5.83734 5.94005 5.99014 6.03722 6.09819 6.18641 6.24132 6.43351 6.52939 6.75942 6.80453 7.12048 7.14779 7.46957 7.66895 7.71896 7.86201 7.98280 8.20937 8.63309 9.07834 9.58364 11.05682 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.005053 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.584631 B = 5539.518163 C = 7849.571541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.324 6.324 3 C 0.063 3.937 4 C -0.103 4.103 5 C -0.117 4.117 6 C 0.197 3.803 7 N -0.619 5.619 8 C 0.130 3.870 9 C 0.040 3.960 10 O -0.382 6.382 11 C 0.197 3.803 12 C -0.507 4.507 13 H 0.067 0.933 14 C 0.056 3.944 15 N -0.901 5.901 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.270 1.270 20 C 0.157 3.843 21 C -0.167 4.167 22 C -0.181 4.181 23 C -0.180 4.180 24 C -0.164 4.164 25 C -0.168 4.168 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.002 0.998 36 H 0.000 1.000 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.118 0.882 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.776 5.945 -16.573 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.239 6.239 3 C 0.018 3.982 4 C -0.122 4.122 5 C -0.139 4.139 6 C 0.098 3.902 7 N -0.331 5.331 8 C 0.007 3.993 9 C -0.039 4.039 10 O -0.302 6.302 11 C 0.123 3.877 12 C -0.545 4.545 13 H 0.085 0.915 14 C -0.144 4.144 15 N -0.541 5.541 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.195 1.195 20 C 0.033 3.967 21 C -0.186 4.186 22 C -0.218 4.218 23 C -0.217 4.217 24 C -0.186 4.186 25 C -0.187 4.187 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.018 0.982 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.136 0.864 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.630 5.765 -16.468 19.929 hybrid contribution -0.258 -0.278 0.863 0.942 sum -9.889 5.487 -15.605 19.272 Atomic orbital electron populations 1.22892 0.79634 1.03018 1.00778 1.86042 1.20317 1.27455 1.90057 1.18750 0.92240 0.83713 1.03479 1.20165 0.91054 0.98105 1.02883 1.20560 1.00112 0.89890 1.03293 1.17608 0.91072 0.85355 0.96214 1.46234 1.04120 1.02003 1.80731 1.21468 0.79989 1.02228 0.95626 1.22808 0.97713 0.89625 0.93751 1.87924 1.81070 1.32456 1.28730 1.20147 0.93584 0.97338 0.76650 1.21049 1.36963 0.99896 0.96627 0.91476 1.24917 0.95211 0.97691 0.96615 1.69962 1.40719 1.34940 1.08479 0.86399 0.79150 0.83449 0.77941 1.20474 1.21187 1.19514 1.20869 0.96201 0.86676 0.92916 1.23000 1.04222 0.91852 0.99559 1.23027 0.96111 1.00528 1.02143 1.22927 0.93111 1.02463 1.03236 1.20343 0.92556 0.97127 1.08594 1.20797 0.98950 0.91953 1.07029 0.89036 0.93118 0.93365 0.85709 0.84776 0.90371 0.90279 0.94113 0.94734 0.98044 0.98175 0.92799 0.90512 0.91057 0.87591 0.88833 0.89165 0.89011 0.88790 0.86393 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.16 10.50 -19.76 -0.21 -5.36 16 3 C 0.06 1.07 6.69 -39.24 -0.26 0.81 16 4 C -0.10 -1.82 9.98 -39.46 -0.39 -2.22 16 5 C -0.12 -2.07 8.06 -39.40 -0.32 -2.39 16 6 C 0.20 3.26 6.31 -83.70 -0.53 2.73 16 7 N -0.62 -9.01 2.59 -171.70 -0.44 -9.45 16 8 C 0.13 1.84 5.72 -4.04 -0.02 1.81 16 9 C 0.04 0.72 6.28 37.16 0.23 0.95 16 10 O -0.38 -8.91 8.14 -35.23 -0.29 -9.20 16 11 C 0.20 5.42 5.69 36.01 0.20 5.63 16 12 C -0.51 -15.09 9.43 -34.44 -0.32 -15.41 16 13 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 16 Si 0.90 22.45 29.54 -169.99 -5.02 17.42 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.16 1.88 5.45 -4.04 -0.02 1.85 16 21 C -0.17 -1.67 6.01 -90.62 -0.54 -2.22 16 22 C -0.18 -1.56 10.18 -26.69 -0.27 -1.84 16 23 C -0.18 -1.52 10.25 -26.69 -0.27 -1.79 16 24 C -0.16 -2.51 9.21 -39.40 -0.36 -2.88 16 25 C -0.17 -2.56 9.03 -39.46 -0.36 -2.92 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 28 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 30 H 0.13 2.41 5.51 -52.49 -0.29 2.12 16 31 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.08 1.11 6.20 -51.93 -0.32 0.79 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.08 0.93 6.19 -51.93 -0.32 0.61 16 39 H 0.07 0.81 7.81 -51.93 -0.41 0.41 16 40 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.12 1.57 6.13 -52.49 -0.32 1.25 16 46 H 0.12 1.49 6.29 -52.49 -0.33 1.16 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -32.91 375.93 -9.30 -42.21 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.39 Total: 0.32 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.35 Total: -14.97 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.29 Total: -36.09 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.49 Total: -14.56 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.91 -9.30 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831592334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.815 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds