Wall clock time and date at job start Tue Mar 31 2020 10:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36005 * 116.99662 * 2 1 4 4 C 1.38696 * 119.97660 * 180.02562 * 3 2 1 5 5 C 1.38116 * 120.01631 * 180.02562 * 4 3 2 6 6 C 1.38857 * 119.97853 * 359.97438 * 5 4 3 7 7 N 1.39944 * 120.01524 * 180.02562 * 6 5 4 8 8 C 1.46498 * 120.00243 * 0.02562 * 7 6 5 9 9 C 1.53006 * 109.46687 * 269.99780 * 8 7 6 10 10 O 1.42895 * 109.47036 * 65.00210 * 9 8 7 11 11 C 1.42901 * 113.99948 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47372 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00134 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00542 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00126 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47261 * 90.00206 * 16 14 12 18 18 H 1.48500 * 109.47278 * 210.00457 * 16 14 12 19 19 H 1.48506 * 109.46831 * 329.99852 * 16 14 12 20 20 C 1.46504 * 119.99713 * 180.02562 * 7 6 5 21 21 C 1.53000 * 109.47034 * 269.99825 * 20 7 6 22 22 C 1.53000 * 117.50116 * 243.74671 * 21 20 7 23 23 C 1.52997 * 117.49810 * 175.08511 * 21 20 7 24 24 C 1.38857 * 119.96635 * 0.27275 * 6 5 4 25 25 C 1.38114 * 119.97882 * 359.44997 * 24 6 5 26 26 H 1.08998 * 109.46510 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46808 * 300.00087 * 1 2 3 28 28 H 1.08994 * 109.46911 * 60.00622 * 1 2 3 29 29 H 1.07997 * 119.99681 * 0.02562 * 4 3 2 30 30 H 1.07998 * 120.00635 * 179.97438 * 5 4 3 31 31 H 1.08992 * 109.47311 * 150.00023 * 8 7 6 32 32 H 1.08997 * 109.46828 * 29.99667 * 8 7 6 33 33 H 1.09001 * 109.47002 * 184.99687 * 9 8 7 34 34 H 1.08993 * 109.46955 * 305.00124 * 9 8 7 35 35 H 1.08995 * 109.47392 * 299.99575 * 11 10 9 36 36 H 1.09003 * 109.47182 * 59.99587 * 11 10 9 37 37 H 0.96998 * 120.00821 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.47086 * 29.99987 * 20 7 6 39 39 H 1.08997 * 109.46787 * 150.00302 * 20 7 6 40 40 H 1.09001 * 115.54983 * 29.42196 * 21 20 7 41 41 H 1.09001 * 117.49532 * 0.02562 * 22 21 20 42 42 H 1.09001 * 117.49674 * 145.02241 * 22 21 20 43 43 H 1.09005 * 117.50224 * 214.97835 * 23 21 20 44 44 H 1.09001 * 117.49884 * 0.02562 * 23 21 20 45 45 H 1.08001 * 120.01095 * 179.70031 * 24 6 5 46 46 H 1.07997 * 119.99594 * 180.27227 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0594 2.5142 0.0000 6 6 3.3034 3.6789 0.0005 7 7 3.9387 4.9258 0.0005 8 6 5.4017 5.0026 -0.0006 9 6 5.9120 5.0288 1.4416 10 8 5.5990 3.7894 2.0802 11 6 6.0351 3.7090 3.4386 12 6 5.6541 2.3677 4.0101 13 1 5.1316 1.6482 3.3971 14 6 5.9736 2.0584 5.3152 15 7 6.6103 2.9342 6.0616 16 14 5.5019 0.3954 6.0234 17 1 6.6018 -0.5736 5.7861 18 1 5.2655 0.5281 7.4834 19 1 4.2632 -0.0902 5.3636 20 6 3.1407 6.1545 0.0017 21 6 2.8618 6.5828 -1.4404 22 6 3.4457 7.9181 -1.9063 23 6 1.9415 7.7861 -1.6546 24 6 1.9168 3.6058 0.0063 25 6 1.2906 2.3748 -0.0001 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 4.0194 0.3780 -0.0014 30 1 5.1379 2.5701 0.0000 31 1 5.7175 5.9105 -0.5143 32 1 5.8107 4.1330 -0.5151 33 1 6.9922 5.1751 1.4422 34 1 5.4343 5.8464 1.9812 35 1 7.1178 3.8277 3.4803 36 1 5.5603 4.4994 4.0201 37 1 6.8348 2.7168 6.9799 38 1 2.1968 5.9742 0.5162 39 1 3.6897 6.9437 0.5153 40 1 2.8107 5.7741 -2.1695 41 1 4.0288 8.4912 -1.1855 42 1 3.7783 7.9879 -2.9420 43 1 1.2853 7.7694 -2.5247 44 1 1.5351 8.2729 -0.7680 45 1 1.3281 4.5113 0.0116 46 1 0.2121 2.3176 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831592334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:18 Heat of formation + Delta-G solvation = -40.560428 kcal Electronic energy + Delta-G solvation = -25423.186556 eV Core-core repulsion = 21892.734144 eV Total energy + Delta-G solvation = -3530.452412 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.02694 -39.68431 -38.36467 -37.92671 -35.92291 -34.83418 -32.26472 -31.08642 -30.12763 -29.02058 -27.96693 -26.49831 -24.50317 -23.80846 -23.19312 -23.05333 -21.92175 -20.88557 -19.14434 -18.61760 -17.80027 -17.63825 -17.15468 -16.57532 -16.44954 -16.32599 -16.21365 -15.66218 -15.48911 -15.21363 -14.88136 -14.45389 -14.22108 -13.96912 -13.72533 -13.50756 -13.33851 -13.07081 -13.05320 -12.85826 -12.71196 -12.61056 -12.47086 -12.29713 -12.24406 -12.05094 -11.87979 -11.53463 -11.26180 -11.18866 -10.85719 -10.75828 -10.16965 -10.10011 -9.77042 -8.32023 -7.81410 -6.42229 0.56337 0.83336 1.36949 1.39042 1.51605 2.23998 2.34035 2.62731 2.97880 3.02098 3.05166 3.27282 3.85177 3.94012 4.02833 4.09112 4.15326 4.25587 4.30535 4.37158 4.39913 4.46554 4.50086 4.55408 4.61408 4.65785 4.70639 4.77076 4.81742 4.82456 4.85801 4.91940 4.96417 5.08015 5.19416 5.20298 5.30385 5.31816 5.34685 5.52575 5.55524 5.57217 5.87239 5.99037 6.49396 6.55516 6.61581 6.79195 6.87752 7.29690 8.80408 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.005053 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.584631 B = 5539.518163 C = 7849.571541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.346 6.346 3 C 0.051 3.949 4 C -0.127 4.127 5 C -0.138 4.138 6 C 0.186 3.814 7 N -0.622 5.622 8 C 0.138 3.862 9 C 0.031 3.969 10 O -0.390 6.390 11 C 0.214 3.786 12 C -0.536 4.536 13 H 0.056 0.944 14 C 0.010 3.990 15 N -0.931 5.931 16 Si 0.973 3.027 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.270 1.270 20 C 0.156 3.844 21 C -0.173 4.173 22 C -0.175 4.175 23 C -0.170 4.170 24 C -0.165 4.165 25 C -0.165 4.165 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.033 0.967 35 H -0.016 1.016 36 H -0.024 1.024 37 H 0.269 0.731 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.140 0.860 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.339 6.450 -17.221 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.261 6.261 3 C 0.005 3.995 4 C -0.146 4.146 5 C -0.160 4.160 6 C 0.086 3.914 7 N -0.333 5.333 8 C 0.015 3.985 9 C -0.047 4.047 10 O -0.310 6.310 11 C 0.139 3.861 12 C -0.574 4.574 13 H 0.075 0.925 14 C -0.189 4.189 15 N -0.571 5.571 16 Si 0.797 3.203 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.195 1.195 20 C 0.033 3.967 21 C -0.193 4.193 22 C -0.212 4.212 23 C -0.207 4.207 24 C -0.188 4.188 25 C -0.184 4.184 26 H 0.133 0.867 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.001 0.999 36 H -0.006 1.006 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.158 0.842 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.199 6.298 -17.137 21.419 hybrid contribution 0.196 -0.365 1.017 1.098 sum -11.004 5.933 -16.121 20.400 Atomic orbital electron populations 1.23220 0.77205 1.05007 1.01778 1.86008 1.22908 1.27152 1.90044 1.18873 0.92121 0.84765 1.03706 1.20295 0.92109 0.98077 1.04145 1.20542 0.99749 0.90733 1.04929 1.17789 0.91770 0.85740 0.96135 1.46394 1.04386 1.02226 1.80272 1.21483 0.80014 1.04015 0.93030 1.23184 0.98681 0.87308 0.95528 1.87912 1.81025 1.35483 1.26572 1.19705 0.92038 0.95769 0.78595 1.21315 1.37855 1.00775 0.97461 0.92545 1.25835 0.94622 1.01724 0.96678 1.70057 1.41059 1.36928 1.09025 0.85329 0.79002 0.78521 0.77498 1.19145 1.19782 1.19463 1.21001 0.95730 0.85621 0.94361 1.22734 1.06430 0.92255 0.97896 1.23101 0.96433 0.99039 1.02653 1.23011 0.93206 1.00710 1.03821 1.20646 0.92280 0.98128 1.07699 1.21129 1.00380 0.91264 1.05636 0.86742 0.92727 0.91597 0.86255 0.85992 0.86585 0.90462 0.93147 0.94856 0.99862 1.00583 0.92173 0.90845 0.90437 0.88748 0.88338 0.88452 0.88096 0.88150 0.84218 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 16 2 O -0.35 -10.87 10.50 -93.61 -0.98 -11.85 16 3 C 0.05 1.73 6.69 22.49 0.15 1.88 16 4 C -0.13 -4.70 9.98 22.35 0.22 -4.48 16 5 C -0.14 -5.07 8.06 22.39 0.18 -4.89 16 6 C 0.19 6.15 6.31 38.14 0.24 6.39 16 7 N -0.62 -17.63 2.59 -697.13 -1.80 -19.44 16 8 C 0.14 3.79 5.72 86.38 0.49 4.28 16 9 C 0.03 1.13 6.28 71.98 0.45 1.58 16 10 O -0.39 -18.78 8.14 -148.98 -1.21 -19.99 16 11 C 0.21 12.22 5.69 71.24 0.41 12.62 16 12 C -0.54 -32.77 9.43 25.60 0.24 -32.53 16 13 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 14 C 0.01 0.57 5.46 84.65 0.46 1.03 16 15 N -0.93 -57.07 13.29 21.44 0.28 -56.79 16 16 Si 0.97 46.16 29.54 68.60 2.03 48.18 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 20 C 0.16 3.47 5.45 86.38 0.47 3.94 16 21 C -0.17 -3.12 6.01 -10.79 -0.06 -3.19 16 22 C -0.18 -2.56 10.18 30.62 0.31 -2.25 16 23 C -0.17 -2.41 10.25 30.62 0.31 -2.10 16 24 C -0.17 -4.91 9.21 22.39 0.21 -4.70 16 25 C -0.17 -4.84 9.03 22.35 0.20 -4.64 16 26 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.07 7.66 -2.39 -0.02 1.05 16 28 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 29 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 30 H 0.12 4.64 5.51 -2.91 -0.02 4.62 16 31 H 0.12 2.33 8.07 -2.39 -0.02 2.31 16 32 H 0.08 2.18 6.20 -2.39 -0.01 2.16 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 36 H -0.02 -1.43 8.14 -2.39 -0.02 -1.44 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.07 1.67 6.19 -2.39 -0.01 1.65 16 39 H 0.08 1.62 7.81 -2.39 -0.02 1.60 16 40 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 1.36 8.03 -2.39 -0.02 1.34 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.14 3.45 6.13 -2.91 -0.02 3.43 16 46 H 0.15 3.33 6.29 -2.91 -0.02 3.31 16 Total: -1.00 -72.15 375.93 4.67 -67.48 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.95 Total: 17.89 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 5.40 Total: -25.48 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -1.52 Total: -76.22 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -2.20 Total: -31.85 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.15 4.67 -67.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831592334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.921 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds