Wall clock time and date at job start Tue Mar 31 2020 09:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47400 * 2 1 4 4 C 1.42901 * 113.99994 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.43700 * 27.45628 * 4 3 2 6 6 C 1.54887 * 110.48143 * 264.77137 * 4 3 2 7 7 C 1.54894 * 102.74894 * 203.38226 * 6 4 3 8 8 C 1.54267 * 104.19455 * 37.94205 * 7 6 4 9 9 C 1.53873 * 106.60103 * 336.39317 * 8 7 6 10 10 H 1.08993 * 110.03256 * 119.28601 * 9 8 7 11 11 N 1.46904 * 110.03126 * 240.66889 * 9 8 7 12 12 C 1.46898 * 110.99927 * 273.54129 * 11 9 8 13 13 C 1.50700 * 109.47103 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.92645 * 269.72784 * 13 12 11 15 15 C 1.38107 * 120.06375 * 179.72862 * 14 13 12 16 16 C 1.38880 * 119.93045 * 0.54437 * 15 14 13 17 17 O 1.35751 * 120.07054 * 179.74843 * 16 15 14 18 18 C 1.34832 * 117.00056 * 174.44383 * 17 16 15 19 19 H 1.07995 * 119.99587 * 5.05218 * 18 17 16 20 20 C 1.38648 * 119.99888 * 185.06053 * 18 17 16 21 21 N 1.31555 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99870 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47091 * 119.99758 * 22 20 18 25 25 H 1.48506 * 109.46803 * 239.99623 * 22 20 18 26 26 C 1.38880 * 119.85994 * 359.73085 * 16 15 14 27 27 C 1.38100 * 119.93219 * 359.97438 * 26 16 15 28 28 H 1.09000 * 109.47006 * 59.99940 * 1 2 3 29 29 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47199 * 299.99881 * 1 2 3 31 31 H 1.09009 * 109.46872 * 239.99990 * 2 1 3 32 32 H 1.08999 * 109.47351 * 120.00481 * 2 1 3 33 33 H 1.08998 * 110.76170 * 321.69289 * 6 4 3 34 34 H 1.08995 * 110.75901 * 84.88483 * 6 4 3 35 35 H 1.09007 * 110.48383 * 279.26514 * 7 6 4 36 36 H 1.08998 * 110.48796 * 156.62037 * 7 6 4 37 37 H 1.09000 * 110.03234 * 217.10618 * 8 7 6 38 38 H 1.08998 * 110.03032 * 95.67678 * 8 7 6 39 39 H 1.00899 * 110.99609 * 149.58816 * 11 9 8 40 40 H 1.08996 * 109.47199 * 300.00660 * 12 11 9 41 41 H 1.09005 * 109.46765 * 60.00229 * 12 11 9 42 42 H 1.07999 * 119.97429 * 0.02562 * 14 13 12 43 43 H 1.07997 * 120.03714 * 180.27627 * 15 14 13 44 44 H 0.97007 * 119.99868 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.03496 * 179.97438 * 26 16 15 46 46 H 1.08003 * 119.96446 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8816 0.5866 -0.4718 6 6 3.9614 1.6344 1.4441 7 6 5.3295 2.3266 1.2247 8 6 5.0772 3.3013 0.0559 9 6 3.8701 2.7504 -0.7231 10 1 3.0579 3.4772 -0.7160 11 7 4.2602 2.4458 -2.1063 12 6 4.1409 3.6346 -2.9609 13 6 4.5480 3.2841 -4.3688 14 6 5.8666 3.4253 -4.7612 15 6 6.2439 3.0996 -6.0492 16 6 5.2955 2.6406 -6.9539 17 8 5.6623 2.3244 -8.2221 18 6 4.7182 1.7771 -9.0140 19 1 3.7028 1.6838 -8.6582 20 6 5.0511 1.3338 -10.2848 21 7 6.2879 1.4478 -10.7182 22 14 3.7429 0.5761 -11.3822 23 1 2.4422 0.5637 -10.6657 24 1 3.6157 1.3770 -12.6262 25 1 4.1311 -0.8153 -11.7267 26 6 3.9711 2.5053 -6.5584 27 6 3.6013 2.8269 -5.2673 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.2952 2.2713 2.0261 34 1 4.0884 0.6662 1.9285 35 1 6.0888 1.5932 0.9528 36 1 5.6285 2.8729 2.1193 37 1 5.9528 3.3419 -0.5920 38 1 4.8508 4.2955 0.4411 39 1 3.7170 1.6795 -2.4748 40 1 3.1078 3.9822 -2.9576 41 1 4.7905 4.4226 -2.5799 42 1 6.6030 3.7861 -4.0584 43 1 7.2746 3.2058 -6.3538 44 1 6.5207 1.1380 -11.6076 45 1 3.2311 2.1490 -7.2598 46 1 2.5715 2.7215 -4.9590 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832569223.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:57 Heat of formation + Delta-G solvation = -61.878791 kcal Electronic energy + Delta-G solvation = -24398.259986 eV Core-core repulsion = 20866.883141 eV Total energy + Delta-G solvation = -3531.376845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.56833 -38.96446 -37.13372 -36.41464 -34.14585 -32.25785 -31.44833 -30.15449 -29.78973 -27.86007 -26.74173 -25.36578 -23.74796 -23.02058 -21.92210 -21.17877 -20.26855 -19.93171 -17.96356 -17.35186 -17.02994 -16.25494 -15.83318 -15.14440 -14.79677 -14.67949 -14.49019 -14.24538 -13.96903 -13.63233 -13.48641 -13.38279 -13.24777 -12.82584 -12.67104 -12.43129 -12.28698 -12.12809 -11.68677 -11.61160 -11.49628 -11.32428 -11.27210 -11.21865 -10.82500 -10.75229 -10.69117 -10.59028 -10.48029 -10.40259 -9.69410 -9.31221 -8.83015 -8.35193 -8.13927 -7.15957 -6.44238 -4.03005 2.25397 2.30976 3.12279 3.13930 3.19479 3.38514 3.97204 4.22636 4.32731 4.51797 4.69505 4.79027 4.86115 4.91630 5.08019 5.10900 5.11684 5.23874 5.26951 5.30806 5.35571 5.41689 5.45730 5.49534 5.63650 5.64733 5.71560 5.75278 5.80614 5.84394 5.86585 5.89628 5.96095 6.04972 6.15190 6.24586 6.45819 6.73763 6.92666 6.98879 7.07459 7.16347 7.29459 7.38407 7.45714 7.51985 7.85868 8.01162 9.01664 9.72450 10.73993 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.002742 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.078321 B =10210.788144 C =11406.382061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.383 6.383 4 C 0.080 3.920 5 H 0.077 0.923 6 C -0.141 4.141 7 C -0.119 4.119 8 C -0.114 4.114 9 C 0.084 3.916 10 H 0.056 0.944 11 N -0.677 5.677 12 C 0.118 3.882 13 C -0.184 4.184 14 C -0.052 4.052 15 C -0.195 4.195 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.234 4.234 27 C -0.066 4.066 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.341 0.659 40 H 0.028 0.972 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.269 0.731 45 H 0.126 0.874 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 -0.417 22.472 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.302 6.302 4 C 0.022 3.978 5 H 0.095 0.905 6 C -0.180 4.180 7 C -0.157 4.157 8 C -0.152 4.152 9 C -0.026 4.026 10 H 0.073 0.927 11 N -0.309 5.309 12 C -0.010 4.010 13 C -0.185 4.185 14 C -0.071 4.071 15 C -0.214 4.214 16 C 0.102 3.898 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.254 4.254 27 C -0.085 4.085 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.160 0.840 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.133 -0.189 22.237 23.068 hybrid contribution -1.536 -0.629 -0.701 1.802 sum -7.669 -0.818 21.537 22.876 Atomic orbital electron populations 1.21743 0.93828 1.02221 1.03069 1.22504 0.95530 0.83880 1.00081 1.87917 1.20934 1.26412 1.94970 1.23205 0.80664 0.98420 0.95517 0.90542 1.22887 0.97386 1.00967 0.96733 1.22236 0.96612 0.98595 0.98281 1.22151 0.98557 0.97979 0.96520 1.22190 0.95934 0.95364 0.89155 0.92651 1.60831 1.60622 1.08750 1.00664 1.20658 0.98411 0.91911 0.89979 1.19122 0.94220 1.10588 0.94559 1.20461 0.94800 0.97441 0.94383 1.20229 0.98685 1.09307 0.93171 1.19401 0.92309 0.92304 0.85776 1.83981 1.38870 1.68648 1.16725 1.21369 0.90490 1.39324 0.95550 0.89063 1.25285 0.97460 0.97035 0.96766 1.70051 1.17366 1.43850 1.18548 0.85655 0.79549 0.78716 0.79549 1.19126 1.20150 1.20143 1.21118 0.96590 1.10418 0.97255 1.20595 0.97632 0.97163 0.93063 0.91789 0.91149 0.92011 0.93186 0.93549 0.90660 0.91595 0.91253 0.91560 0.90009 0.91961 0.84048 0.95378 0.91133 0.87075 0.86588 0.92091 0.85680 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.50 6.50 37.16 0.24 0.74 16 3 O -0.38 -4.26 10.05 -35.23 -0.35 -4.61 16 4 C 0.08 0.82 2.78 -25.07 -0.07 0.75 16 5 H 0.08 0.80 7.65 -51.93 -0.40 0.40 16 6 C -0.14 -1.22 6.62 -24.74 -0.16 -1.39 16 7 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 8 C -0.11 -1.11 6.48 -25.61 -0.17 -1.28 16 9 C 0.08 0.93 3.00 -66.59 -0.20 0.73 16 10 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 11 N -0.68 -8.72 6.14 -106.81 -0.66 -9.37 16 12 C 0.12 1.64 5.63 -4.98 -0.03 1.62 16 13 C -0.18 -3.15 5.40 -104.58 -0.56 -3.72 16 14 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 15 C -0.19 -4.17 9.99 -39.39 -0.39 -4.57 16 16 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 17 O -0.18 -5.16 9.76 0.04 0.00 -5.16 16 18 C -0.39 -11.01 9.49 30.88 0.29 -10.72 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 22 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 27 C -0.07 -1.21 9.69 -39.61 -0.38 -1.60 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.44 8.11 -51.92 -0.42 0.02 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.34 4.55 8.35 -39.29 -0.33 4.23 16 40 H 0.03 0.38 8.01 -51.93 -0.42 -0.03 16 41 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 46 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -30.38 376.62 -9.50 -39.87 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -7.57 Total: 6.40 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -2.33 Total: -23.69 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.10 Total: -34.09 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.35 Total: -9.77 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.38 -9.50 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832569223.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.004 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds