Wall clock time and date at job start Tue Mar 31 2020 10:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35989 * 117.00063 * 2 1 4 4 C 1.38466 * 120.09452 * 179.97438 * 3 2 1 5 5 C 1.38737 * 120.55122 * 179.97438 * 4 3 2 6 6 C 1.38183 * 119.92475 * 0.21993 * 5 4 3 7 7 C 1.39967 * 119.47454 * 359.66418 * 6 5 4 8 8 O 1.36013 * 119.79113 * 180.25025 * 7 6 5 9 9 C 1.42905 * 116.99599 * 179.97438 * 8 7 6 10 10 C 1.38211 * 120.41068 * 0.22442 * 7 6 5 11 11 N 1.40043 * 122.98253 * 179.36384 * 6 5 4 12 12 C 1.46894 * 110.87893 * 254.46555 * 11 6 5 13 13 C 1.53002 * 109.47069 * 192.57780 * 12 11 6 14 14 C 1.53002 * 109.47625 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47307 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99872 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99770 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00271 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99974 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47319 * 59.99749 * 19 17 15 21 21 H 1.48507 * 109.47214 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47051 * 299.99616 * 19 17 15 23 23 C 1.46432 * 113.04605 * 19.85416 * 11 6 5 24 24 C 1.53377 * 108.77605 * 306.97143 * 23 11 6 25 25 C 1.50807 * 118.06225 * 180.27869 * 5 4 3 26 26 H 1.09010 * 109.46629 * 60.00100 * 1 2 3 27 27 H 1.08997 * 109.47766 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47349 * 300.00552 * 1 2 3 29 29 H 1.08009 * 119.72615 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.46716 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.46970 * 300.00322 * 9 8 7 32 32 H 1.08999 * 109.47073 * 60.00607 * 9 8 7 33 33 H 1.08006 * 120.08657 * 180.02562 * 10 7 6 34 34 H 1.09003 * 109.47190 * 312.57409 * 12 11 6 35 35 H 1.08993 * 109.47548 * 72.57613 * 12 11 6 36 36 H 1.09003 * 109.46812 * 299.99860 * 13 12 11 37 37 H 1.09001 * 109.47028 * 59.99847 * 13 12 11 38 38 H 1.08999 * 109.46746 * 300.00572 * 14 13 12 39 39 H 1.09002 * 109.46647 * 59.99457 * 14 13 12 40 40 H 0.96998 * 120.00216 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.60992 * 187.13947 * 23 11 6 42 42 H 1.09004 * 109.60850 * 66.79815 * 23 11 6 43 43 H 1.08997 * 109.76522 * 187.80809 * 24 23 11 44 44 H 1.09000 * 109.76033 * 308.52303 * 24 23 11 45 45 H 1.08997 * 109.43283 * 75.70002 * 25 5 4 46 46 H 1.09001 * 109.43739 * 315.84204 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4290 1.2864 0.0005 5 6 4.0687 2.5175 0.0000 6 6 3.3239 3.6814 0.0035 7 6 1.9263 3.6046 0.0005 8 8 1.1869 4.7462 -0.0012 9 6 -0.2345 4.5984 -0.0049 10 6 1.2931 2.3761 -0.0014 11 7 3.9024 4.9567 0.0163 12 6 3.7755 5.5759 1.3423 13 6 4.1252 7.0623 1.2466 14 6 3.9924 7.7075 2.6275 15 6 4.3375 9.1714 2.5333 16 1 4.6233 9.5988 1.5836 17 6 4.2893 9.9649 3.6598 18 7 3.9417 9.4443 4.8165 19 14 4.7163 11.7797 3.5430 20 1 3.7885 12.4465 2.5945 21 1 4.5887 12.4056 4.8837 22 1 6.1119 11.9296 3.0581 23 6 5.2963 4.9584 -0.4325 24 6 6.0797 3.9246 0.3860 25 6 5.5767 2.5334 -0.0058 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 4.0145 0.3787 0.0005 30 1 -0.7021 5.5830 -0.0064 31 1 -0.5404 4.0498 -0.8958 32 1 -0.5450 4.0497 0.8842 33 1 0.2144 2.3230 -0.0041 34 1 2.7511 5.4659 1.6981 35 1 4.4565 5.0865 2.0385 36 1 5.1496 7.1724 0.8907 37 1 3.4441 7.5517 0.5503 38 1 2.9679 7.5974 2.9830 39 1 4.6732 7.2182 3.3241 40 1 3.9074 10.0026 5.6090 41 1 5.7280 5.9478 -0.2815 42 1 5.3404 4.6974 -1.4899 43 1 7.1435 4.0080 0.1639 44 1 5.9111 4.0923 1.4498 45 1 5.9381 2.2850 -1.0037 46 1 5.9500 1.7987 0.7076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839656436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:30 Heat of formation + Delta-G solvation = -53.819431 kcal Electronic energy + Delta-G solvation = -25638.330688 eV Core-core repulsion = 22107.303322 eV Total energy + Delta-G solvation = -3531.027365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98038 -39.14858 -38.48963 -35.92227 -33.97938 -33.02486 -31.26694 -29.99352 -29.39237 -27.87865 -26.81479 -26.40092 -24.57205 -23.08262 -22.64007 -21.62621 -20.21755 -19.10587 -18.26264 -17.11860 -16.60103 -16.23433 -16.02801 -15.99058 -15.47396 -14.96933 -14.72920 -14.41500 -14.24421 -14.15309 -13.94094 -13.67187 -12.94407 -12.69329 -12.63589 -12.49918 -12.27588 -11.97697 -11.64502 -11.55013 -11.51545 -11.37273 -11.15808 -10.93462 -10.81948 -10.65152 -10.51945 -10.34253 -10.24577 -9.50321 -9.32722 -9.06798 -8.72240 -8.40902 -8.28759 -7.25948 -5.94518 -3.96317 1.27829 1.49323 3.12622 3.33405 3.36851 3.40728 3.43664 3.64713 4.12357 4.50802 4.63968 4.80489 4.91626 4.92696 4.96144 5.00459 5.01951 5.13327 5.17194 5.21437 5.27311 5.31781 5.41105 5.50199 5.53410 5.70705 5.76663 5.82993 5.90184 5.93060 5.96557 6.15752 6.22392 6.28548 6.42473 6.48173 6.56994 6.79711 6.90442 7.14322 7.21943 7.34752 7.44055 7.74813 7.80852 7.91090 8.06589 8.49929 9.10794 9.67198 11.16933 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.003416 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.784041 B = 8195.594425 C = 9095.118353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.143 3.857 4 C -0.175 4.175 5 C -0.051 4.051 6 C 0.059 3.941 7 C 0.165 3.835 8 O -0.289 6.289 9 C 0.025 3.975 10 C -0.289 4.289 11 N -0.484 5.484 12 C 0.063 3.937 13 C -0.104 4.104 14 C 0.024 3.976 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.053 3.947 24 C -0.161 4.161 25 C -0.075 4.075 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.133 0.867 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.260 0.740 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 -19.075 -11.372 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.097 3.903 4 C -0.195 4.195 5 C -0.054 4.054 6 C -0.038 4.038 7 C 0.117 3.883 8 O -0.200 6.200 9 C -0.070 4.070 10 C -0.309 4.309 11 N -0.200 5.200 12 C -0.061 4.061 13 C -0.142 4.142 14 C -0.014 4.014 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.075 4.075 24 C -0.200 4.200 25 C -0.112 4.112 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.123 -18.664 -11.497 22.511 hybrid contribution -0.026 0.453 0.557 0.718 sum -5.149 -18.210 -10.941 21.859 Atomic orbital electron populations 1.23010 0.78763 1.03654 1.01248 1.86066 1.21084 1.26947 1.89028 1.18485 0.91896 0.83383 0.96506 1.20034 0.91042 0.97615 1.10807 1.19504 0.95829 0.91048 0.99023 1.17871 0.89447 0.89411 1.07092 1.18664 0.89925 0.84778 0.94895 1.86328 1.18115 1.27945 1.87628 1.23072 0.79402 1.03958 1.00584 1.21057 1.00249 0.91752 1.17838 1.58926 1.17522 1.15642 1.27918 1.22380 1.01353 0.96455 0.85918 1.21678 0.99965 0.91435 1.01072 1.19046 0.97058 0.94883 0.90394 1.21218 1.45525 0.94335 0.94438 0.92724 1.25021 0.95485 0.98504 0.95479 1.69960 1.48584 1.35882 0.99249 0.86674 0.78968 0.85429 0.77012 1.20244 1.21364 1.20281 1.22275 0.86448 1.00033 0.98737 1.22217 1.00703 0.95231 1.01832 1.20516 0.90029 0.98314 1.02292 0.92871 0.88390 0.92777 0.85452 0.87994 0.93166 0.93035 0.84902 0.90860 0.94731 0.93392 0.92470 0.96660 0.96892 0.93041 0.88988 0.90812 0.90571 0.90837 0.90227 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.82 101.05 0.99 1.21 16 2 O -0.32 -3.70 10.50 -19.71 -0.21 -3.91 16 3 C 0.14 1.86 6.68 -39.33 -0.26 1.60 16 4 C -0.18 -2.28 9.57 -39.31 -0.38 -2.66 16 5 C -0.05 -0.70 5.74 -104.41 -0.60 -1.30 16 6 C 0.06 0.93 5.15 -83.48 -0.43 0.50 16 7 C 0.17 2.53 6.31 -38.94 -0.25 2.29 16 8 O -0.29 -4.51 9.04 -19.78 -0.18 -4.69 16 9 C 0.03 0.27 9.81 101.05 0.99 1.26 16 10 C -0.29 -3.75 8.01 -39.43 -0.32 -4.06 16 11 N -0.48 -8.13 4.25 -171.03 -0.73 -8.85 16 12 C 0.06 1.20 4.60 -3.83 -0.02 1.18 16 13 C -0.10 -2.24 5.11 -26.73 -0.14 -2.37 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.05 0.75 5.69 -3.88 -0.02 0.73 16 24 C -0.16 -2.01 6.03 -26.52 -0.16 -2.17 16 25 C -0.07 -0.84 5.80 -27.82 -0.16 -1.01 16 26 H 0.05 0.36 7.66 -51.92 -0.40 -0.04 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.38 7.67 -51.93 -0.40 -0.01 16 29 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 32 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 33 H 0.13 1.39 4.51 -52.48 -0.24 1.15 16 34 H 0.07 1.47 6.79 -51.93 -0.35 1.12 16 35 H 0.03 0.66 6.35 -51.93 -0.33 0.33 16 36 H 0.05 1.00 6.33 -51.93 -0.33 0.67 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.09 1.37 6.02 -51.93 -0.31 1.06 16 42 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.04 6.37 -51.93 -0.33 0.71 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -32.93 360.14 -8.51 -41.44 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.25 Total: -1.71 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -1.29 Total: -18.01 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.01 Total: -35.52 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.39 Total: -8.59 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.93 -8.51 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839656436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.375 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds