Wall clock time and date at job start Tue Mar 31 2020 10:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35989 * 117.00063 * 2 1 4 4 C 1.38466 * 120.09452 * 179.97438 * 3 2 1 5 5 C 1.38737 * 120.55122 * 179.97438 * 4 3 2 6 6 C 1.38183 * 119.92475 * 0.21993 * 5 4 3 7 7 C 1.39967 * 119.47454 * 359.66418 * 6 5 4 8 8 O 1.36013 * 119.79113 * 180.25025 * 7 6 5 9 9 C 1.42905 * 116.99599 * 179.97438 * 8 7 6 10 10 C 1.38211 * 120.41068 * 0.22442 * 7 6 5 11 11 N 1.40043 * 122.98253 * 179.36384 * 6 5 4 12 12 C 1.46894 * 110.87893 * 254.46555 * 11 6 5 13 13 C 1.53002 * 109.47069 * 192.57780 * 12 11 6 14 14 C 1.53002 * 109.47625 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47307 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99872 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99770 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00271 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99974 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47319 * 59.99749 * 19 17 15 21 21 H 1.48507 * 109.47214 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47051 * 299.99616 * 19 17 15 23 23 C 1.46432 * 113.04605 * 19.85416 * 11 6 5 24 24 C 1.53377 * 108.77605 * 306.97143 * 23 11 6 25 25 C 1.50807 * 118.06225 * 180.27869 * 5 4 3 26 26 H 1.09010 * 109.46629 * 60.00100 * 1 2 3 27 27 H 1.08997 * 109.47766 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47349 * 300.00552 * 1 2 3 29 29 H 1.08009 * 119.72615 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.46716 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.46970 * 300.00322 * 9 8 7 32 32 H 1.08999 * 109.47073 * 60.00607 * 9 8 7 33 33 H 1.08006 * 120.08657 * 180.02562 * 10 7 6 34 34 H 1.09003 * 109.47190 * 312.57409 * 12 11 6 35 35 H 1.08993 * 109.47548 * 72.57613 * 12 11 6 36 36 H 1.09003 * 109.46812 * 299.99860 * 13 12 11 37 37 H 1.09001 * 109.47028 * 59.99847 * 13 12 11 38 38 H 1.08999 * 109.46746 * 300.00572 * 14 13 12 39 39 H 1.09002 * 109.46647 * 59.99457 * 14 13 12 40 40 H 0.96998 * 120.00216 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.60992 * 187.13947 * 23 11 6 42 42 H 1.09004 * 109.60850 * 66.79815 * 23 11 6 43 43 H 1.08997 * 109.76522 * 187.80809 * 24 23 11 44 44 H 1.09000 * 109.76033 * 308.52303 * 24 23 11 45 45 H 1.08997 * 109.43283 * 75.70002 * 25 5 4 46 46 H 1.09001 * 109.43739 * 315.84204 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4290 1.2864 0.0005 5 6 4.0687 2.5175 0.0000 6 6 3.3239 3.6814 0.0035 7 6 1.9263 3.6046 0.0005 8 8 1.1869 4.7462 -0.0012 9 6 -0.2345 4.5984 -0.0049 10 6 1.2931 2.3761 -0.0014 11 7 3.9024 4.9567 0.0163 12 6 3.7755 5.5759 1.3423 13 6 4.1252 7.0623 1.2466 14 6 3.9924 7.7075 2.6275 15 6 4.3375 9.1714 2.5333 16 1 4.6233 9.5988 1.5836 17 6 4.2893 9.9649 3.6598 18 7 3.9417 9.4443 4.8165 19 14 4.7163 11.7797 3.5430 20 1 3.7885 12.4465 2.5945 21 1 4.5887 12.4056 4.8837 22 1 6.1119 11.9296 3.0581 23 6 5.2963 4.9584 -0.4325 24 6 6.0797 3.9246 0.3860 25 6 5.5767 2.5334 -0.0058 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 4.0145 0.3787 0.0005 30 1 -0.7021 5.5830 -0.0064 31 1 -0.5404 4.0498 -0.8958 32 1 -0.5450 4.0497 0.8842 33 1 0.2144 2.3230 -0.0041 34 1 2.7511 5.4659 1.6981 35 1 4.4565 5.0865 2.0385 36 1 5.1496 7.1724 0.8907 37 1 3.4441 7.5517 0.5503 38 1 2.9679 7.5974 2.9830 39 1 4.6732 7.2182 3.3241 40 1 3.9074 10.0026 5.6090 41 1 5.7280 5.9478 -0.2815 42 1 5.3404 4.6974 -1.4899 43 1 7.1435 4.0080 0.1639 44 1 5.9111 4.0923 1.4498 45 1 5.9381 2.2850 -1.0037 46 1 5.9500 1.7987 0.7076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839656436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:29 Heat of formation + Delta-G solvation = -73.813337 kcal Electronic energy + Delta-G solvation = -25639.197688 eV Core-core repulsion = 22107.303322 eV Total energy + Delta-G solvation = -3531.894366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02258 -40.12141 -39.53662 -37.12978 -35.68921 -34.45488 -33.04722 -31.01533 -30.46839 -28.76108 -28.45750 -27.30106 -26.00883 -24.43822 -23.89229 -22.81774 -21.82051 -20.31622 -19.22698 -18.49969 -18.08347 -17.60131 -17.15649 -16.89738 -16.51908 -16.37150 -16.18454 -15.61851 -15.54390 -15.26916 -14.98359 -14.78895 -14.28586 -14.05812 -14.01372 -13.65846 -13.42207 -13.31188 -12.99706 -12.81870 -12.57879 -12.52737 -12.44088 -12.40153 -12.34254 -12.17682 -11.91376 -11.69864 -11.40057 -11.35780 -11.15276 -11.07488 -10.53608 -9.89929 -9.43788 -8.39536 -8.18835 -6.30293 0.26503 0.43694 1.40154 1.43877 1.51716 2.31430 2.38028 2.41912 2.59998 2.96748 3.13802 3.68984 3.92299 3.97187 4.00880 4.06816 4.13228 4.22113 4.27263 4.32979 4.34779 4.37126 4.39350 4.44555 4.56712 4.66512 4.68864 4.72031 4.77077 4.83449 4.86936 4.98983 5.03155 5.05042 5.10359 5.21907 5.25958 5.29556 5.44937 5.52320 5.60898 5.74524 5.85871 6.09774 6.18386 6.27530 6.34526 6.71483 6.85935 7.38710 8.93013 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.003416 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.784041 B = 8195.594425 C = 9095.118353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.144 3.856 4 C -0.183 4.183 5 C -0.050 4.050 6 C 0.023 3.977 7 C 0.148 3.852 8 O -0.321 6.321 9 C 0.017 3.983 10 C -0.289 4.289 11 N -0.491 5.491 12 C 0.082 3.918 13 C -0.085 4.085 14 C 0.030 3.970 15 C -0.542 4.542 16 H 0.060 0.940 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.265 1.265 23 C 0.048 3.952 24 C -0.156 4.156 25 C -0.071 4.071 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.059 0.941 29 H 0.146 0.854 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.155 0.845 34 H 0.055 0.945 35 H 0.029 0.971 36 H 0.057 0.943 37 H 0.048 0.952 38 H -0.014 1.014 39 H -0.010 1.010 40 H 0.264 0.736 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.050 0.950 45 H 0.102 0.898 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 -20.041 -12.673 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.098 3.902 4 C -0.203 4.203 5 C -0.053 4.053 6 C -0.074 4.074 7 C 0.101 3.899 8 O -0.233 6.233 9 C -0.077 4.077 10 C -0.309 4.309 11 N -0.208 5.208 12 C -0.044 4.044 13 C -0.123 4.123 14 C -0.007 4.007 15 C -0.580 4.580 16 H 0.078 0.922 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.190 1.190 23 C -0.078 4.078 24 C -0.195 4.195 25 C -0.108 4.108 26 H 0.081 0.919 27 H 0.141 0.859 28 H 0.077 0.923 29 H 0.164 0.836 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.173 0.827 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.005 0.995 39 H 0.008 0.992 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.120 0.880 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.887 -19.656 -12.820 23.970 hybrid contribution -0.212 0.630 0.962 1.169 sum -5.099 -19.026 -11.858 22.991 Atomic orbital electron populations 1.23339 0.76678 1.05681 1.01977 1.86065 1.23267 1.26121 1.88639 1.18677 0.92250 0.83917 0.95379 1.20294 0.91469 0.97966 1.10532 1.19797 0.97122 0.90644 0.97734 1.18104 0.90097 0.89408 1.09744 1.18940 0.90130 0.85455 0.95398 1.86272 1.20286 1.28907 1.87875 1.23316 0.77370 1.05015 1.02020 1.21238 1.01435 0.90939 1.17258 1.58827 1.19100 1.16933 1.25972 1.21978 0.99928 0.94759 0.87717 1.21394 1.00270 0.92975 0.97663 1.18915 0.94526 0.94699 0.92576 1.21638 1.45882 0.95526 0.94933 0.92182 1.25999 0.95033 1.03880 0.94921 1.70102 1.49342 1.37935 1.00095 0.85489 0.79263 0.78857 0.77370 1.19200 1.20744 1.19001 1.22358 0.85493 1.00160 0.99836 1.22168 1.01871 0.95470 0.99967 1.20596 0.88423 0.97794 1.03998 0.91862 0.85853 0.92278 0.83578 0.87315 0.91145 0.92039 0.82729 0.92672 0.95334 0.92464 0.93336 0.99516 0.99174 0.92765 0.90131 0.89335 0.88199 0.93147 0.87989 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.82 113.37 1.11 1.34 16 2 O -0.33 -6.91 10.50 -93.42 -0.98 -7.89 16 3 C 0.14 3.52 6.68 22.43 0.15 3.67 16 4 C -0.18 -4.45 9.57 22.44 0.21 -4.24 16 5 C -0.05 -1.32 5.74 -19.72 -0.11 -1.43 16 6 C 0.02 0.73 5.15 38.23 0.20 0.93 16 7 C 0.15 4.57 6.31 22.68 0.14 4.72 16 8 O -0.32 -10.26 9.04 -93.70 -0.85 -11.11 16 9 C 0.02 0.37 9.81 113.37 1.11 1.48 16 10 C -0.29 -7.20 8.01 22.37 0.18 -7.02 16 11 N -0.49 -16.83 4.25 -695.01 -2.95 -19.78 16 12 C 0.08 3.25 4.60 86.31 0.40 3.65 16 13 C -0.09 -3.83 5.11 30.60 0.16 -3.67 16 14 C 0.03 1.70 4.97 29.85 0.15 1.85 16 15 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 16 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 17 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 18 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 19 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 C 0.05 1.37 5.69 86.52 0.49 1.86 16 24 C -0.16 -3.72 6.03 30.73 0.19 -3.54 16 25 C -0.07 -1.47 5.80 29.89 0.17 -1.30 16 26 H 0.06 0.69 7.66 -2.38 -0.02 0.67 16 27 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.70 7.67 -2.39 -0.02 0.69 16 29 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.17 7.65 -2.39 -0.02 1.15 16 32 H 0.06 1.14 7.65 -2.39 -0.02 1.13 16 33 H 0.16 2.97 4.51 -2.91 -0.01 2.95 16 34 H 0.05 2.36 6.79 -2.39 -0.02 2.35 16 35 H 0.03 1.15 6.35 -2.39 -0.02 1.13 16 36 H 0.06 2.44 6.33 -2.39 -0.02 2.43 16 37 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 38 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.08 2.41 6.02 -2.39 -0.01 2.40 16 42 H 0.09 2.22 8.11 -2.39 -0.02 2.20 16 43 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.05 1.44 6.37 -2.39 -0.02 1.42 16 45 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -72.66 360.14 3.74 -68.92 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.97 Total: 13.76 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 5.24 Total: -33.07 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -2.67 Total: -77.84 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -1.83 Total: -19.00 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.66 3.74 -68.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839656436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.895 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds