Wall clock time and date at job start Tue Mar 31 2020 09:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47154 * 2 1 4 4 C 1.42902 * 113.99847 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.85012 * 20.33930 * 4 3 2 6 6 C 1.53777 * 113.61036 * 151.53173 * 4 3 2 7 7 C 1.53777 * 87.08116 * 140.06615 * 6 4 3 8 8 H 1.09000 * 113.61737 * 89.11454 * 7 6 4 9 9 N 1.46906 * 113.61936 * 219.93393 * 7 6 4 10 10 C 1.46895 * 111.00208 * 204.99895 * 9 7 6 11 11 H 1.08995 * 109.47275 * 325.00494 * 10 9 7 12 12 C 1.52999 * 109.46825 * 85.00085 * 10 9 7 13 13 C 1.50698 * 109.47217 * 204.99801 * 10 9 7 14 14 C 1.38300 * 119.93006 * 319.73337 * 13 10 9 15 15 C 1.38108 * 120.06619 * 179.72576 * 14 13 10 16 16 C 1.38873 * 119.93038 * 0.56398 * 15 14 13 17 17 O 1.35748 * 120.07024 * 179.68967 * 16 15 14 18 18 C 1.34833 * 117.00033 * 174.49017 * 17 16 15 19 19 H 1.07995 * 120.00032 * 5.05028 * 18 17 16 20 20 C 1.38651 * 119.99533 * 185.05289 * 18 17 16 21 21 N 1.31558 * 120.00698 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99792 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46928 * 60.00368 * 22 20 18 24 24 H 1.48498 * 109.47440 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47528 * 300.00337 * 22 20 18 26 26 C 1.38888 * 119.86048 * 359.70497 * 16 15 14 27 27 C 1.38089 * 119.93248 * 0.02562 * 26 16 15 28 28 C 1.53780 * 87.08317 * 334.56955 * 7 6 4 29 29 H 1.08995 * 109.47300 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47101 * 299.99557 * 1 2 3 31 31 H 1.09007 * 109.47118 * 59.99736 * 1 2 3 32 32 H 1.09005 * 109.46750 * 240.00280 * 2 1 3 33 33 H 1.08994 * 109.47316 * 120.00425 * 2 1 3 34 34 H 1.08997 * 113.61828 * 254.61354 * 6 4 3 35 35 H 1.09004 * 113.61849 * 25.52313 * 6 4 3 36 36 H 1.00901 * 110.99794 * 81.04484 * 9 7 6 37 37 H 1.08994 * 109.47596 * 60.00058 * 12 10 9 38 38 H 1.09007 * 109.47325 * 180.02562 * 12 10 9 39 39 H 1.08999 * 109.47192 * 299.99829 * 12 10 9 40 40 H 1.07995 * 119.96387 * 359.97309 * 14 13 10 41 41 H 1.07993 * 120.03198 * 180.26877 * 15 14 13 42 42 H 0.96993 * 120.00464 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.02882 * 180.02562 * 26 16 15 44 44 H 1.08004 * 119.96581 * 179.97438 * 27 26 16 45 45 H 1.09003 * 113.61372 * 270.88452 * 28 7 6 46 46 H 1.08996 * 113.62025 * 139.97827 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9274 0.5545 -0.3482 6 6 3.9474 2.7434 -0.6710 7 6 4.9920 2.8185 0.4550 8 1 5.9152 2.2843 0.2306 9 7 5.2275 4.1817 0.9494 10 6 6.5656 4.3024 1.5433 11 1 6.8270 3.3696 2.0427 12 6 7.5873 4.5955 0.4429 13 6 6.5705 5.4275 2.5459 14 6 5.8933 6.6012 2.2693 15 6 5.8912 7.6320 3.1885 16 6 6.5799 7.4934 4.3865 17 8 6.5850 8.5071 5.2893 18 6 7.1752 8.2658 6.4774 19 1 7.6872 7.3300 6.6457 20 6 7.1247 9.2192 7.4828 21 7 6.5005 10.3590 7.2779 22 14 7.9417 8.8847 9.1290 23 1 9.3947 8.6570 8.9232 24 1 7.7453 10.0521 10.0255 25 1 7.3344 7.6787 9.7472 26 6 7.2637 6.3156 4.6588 27 6 7.2573 5.2865 3.7381 28 6 4.0067 2.0105 1.3160 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.3801 2.5763 -1.6574 35 1 3.2295 3.5635 -0.6560 36 1 4.5136 4.4559 1.6077 37 1 7.3260 5.5284 -0.0566 38 1 8.5804 4.6847 0.8834 39 1 7.5838 3.7818 -0.2823 40 1 5.3622 6.7103 1.3353 41 1 5.3586 8.5465 2.9739 42 1 6.4648 11.0258 7.9814 43 1 7.7998 6.2047 5.5898 44 1 7.7892 4.3705 3.9491 45 1 3.3049 2.6302 1.8743 46 1 4.4870 1.2518 1.9337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840762865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:10 Heat of formation + Delta-G solvation = -33.168499 kcal Electronic energy + Delta-G solvation = -24157.094308 eV Core-core repulsion = 20626.962435 eV Total energy + Delta-G solvation = -3530.131874 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.89455 -39.06695 -37.52490 -36.51759 -34.31111 -32.24026 -31.27902 -30.22353 -29.42101 -27.92516 -25.85119 -25.39339 -23.89212 -23.03644 -22.23714 -21.71420 -20.12410 -19.68808 -17.94849 -17.23532 -17.00146 -16.03075 -15.89098 -15.30450 -15.00729 -14.62289 -14.49098 -14.03991 -13.75601 -13.62377 -13.34893 -13.26249 -12.96029 -12.73249 -12.58889 -12.51968 -12.33504 -12.10693 -11.84480 -11.73994 -11.65055 -11.52716 -11.23086 -11.03710 -11.01890 -10.88953 -10.63221 -10.61672 -10.42774 -10.23851 -9.63522 -9.33476 -8.82180 -8.30074 -8.15960 -7.17002 -6.44707 -4.03743 2.23592 2.31220 3.12739 3.13815 3.16679 3.42232 3.96697 4.24218 4.41974 4.45894 4.57720 4.62223 4.73573 4.80760 4.91760 5.04476 5.07550 5.10310 5.18331 5.33560 5.34229 5.49277 5.55008 5.58994 5.64677 5.68265 5.70199 5.77272 5.84213 5.87971 5.89159 5.95310 6.04504 6.10725 6.24637 6.41059 6.48647 6.74239 6.89002 7.04089 7.05562 7.10066 7.27870 7.42936 7.44531 7.56441 7.84340 8.00190 9.00718 9.71280 10.73212 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.002401 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.947385 B =11657.733697 C =12273.587585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.062 3.938 5 H 0.083 0.917 6 C -0.123 4.123 7 C 0.071 3.929 8 H 0.095 0.905 9 N -0.670 5.670 10 C 0.142 3.858 11 H 0.041 0.959 12 C -0.132 4.132 13 C -0.193 4.193 14 C -0.055 4.055 15 C -0.195 4.195 16 C 0.155 3.845 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.235 4.235 27 C -0.065 4.065 28 C -0.184 4.184 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.349 0.651 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 -19.295 -13.691 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.003 3.997 5 H 0.101 0.899 6 C -0.161 4.161 7 C -0.040 4.040 8 H 0.113 0.887 9 N -0.301 5.301 10 C 0.033 3.967 11 H 0.059 0.941 12 C -0.190 4.190 13 C -0.194 4.194 14 C -0.074 4.074 15 C -0.214 4.214 16 C 0.101 3.899 17 O -0.081 6.081 18 C -0.469 4.469 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.254 4.254 27 C -0.084 4.084 28 C -0.224 4.224 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.170 0.830 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.122 0.878 45 H 0.111 0.889 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.787 -18.414 -14.161 23.718 hybrid contribution 0.518 -0.980 1.790 2.106 sum -4.269 -19.394 -12.371 23.397 Atomic orbital electron populations 1.21750 0.93855 1.02127 1.03221 1.22486 0.95602 0.84233 0.99781 1.87977 1.20713 1.25961 1.94608 1.23549 0.80946 0.98080 0.97104 0.89871 1.23317 0.97869 0.96908 0.98014 1.22743 0.96394 0.89220 0.95669 0.88654 1.60533 1.04307 1.22030 1.43209 1.20162 0.88887 0.95121 0.92498 0.94123 1.21790 0.97793 1.01674 0.97759 1.19267 1.07079 0.96627 0.96449 1.20501 0.97312 0.91879 0.97701 1.20257 1.06062 1.00760 0.94334 1.19428 0.92392 0.87705 0.90361 1.83981 1.68320 1.32777 1.23012 1.21267 1.33573 1.04241 0.87777 0.89172 1.25286 0.97150 0.94923 0.99168 1.70025 1.39572 1.06132 1.34004 0.85789 0.79352 0.78220 0.80106 1.19519 1.20268 1.19538 1.21111 1.07319 0.95076 1.01914 1.20576 0.97414 0.97431 0.92986 1.24261 0.99570 1.00986 0.97582 0.91262 0.91783 0.91856 0.93576 0.93557 0.91107 0.88644 0.83034 0.91960 0.92732 0.93598 0.86275 0.86577 0.91964 0.85669 0.87846 0.88896 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.44 6.50 37.16 0.24 0.68 16 3 O -0.37 -3.99 10.36 -35.23 -0.36 -4.35 16 4 C 0.06 0.57 4.30 -25.92 -0.11 0.46 16 5 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 6 C -0.12 -1.18 7.71 -25.92 -0.20 -1.38 16 7 C 0.07 0.71 3.87 -66.90 -0.26 0.45 16 8 H 0.10 0.89 7.49 -51.93 -0.39 0.51 16 9 N -0.67 -8.12 5.82 -100.11 -0.58 -8.70 16 10 C 0.14 1.89 2.67 -68.87 -0.18 1.70 16 11 H 0.04 0.53 7.70 -51.93 -0.40 0.13 16 12 C -0.13 -1.64 9.38 37.16 0.35 -1.29 16 13 C -0.19 -3.21 4.71 -104.58 -0.49 -3.71 16 14 C -0.06 -0.98 9.00 -39.61 -0.36 -1.34 16 15 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16 16 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 17 O -0.18 -5.10 9.76 0.05 0.00 -5.09 16 18 C -0.39 -11.00 9.49 30.88 0.29 -10.71 16 19 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 22 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C -0.23 -5.09 9.17 -39.40 -0.36 -5.45 16 27 C -0.07 -1.18 9.66 -39.61 -0.38 -1.57 16 28 C -0.18 -1.82 7.53 -25.92 -0.20 -2.02 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.35 4.53 7.46 -39.29 -0.29 4.24 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 39 H 0.04 0.49 7.74 -51.93 -0.40 0.09 16 40 H 0.12 1.89 7.72 -52.49 -0.41 1.48 16 41 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 44 H 0.10 1.61 8.03 -52.48 -0.42 1.19 16 45 H 0.09 1.04 7.83 -51.93 -0.41 0.63 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -30.18 377.37 -9.03 -39.21 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.48 Total: 7.22 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -2.03 Total: -24.87 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.18 Total: -33.33 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.36 Total: -9.45 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.18 -9.03 -39.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840762865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.039 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds