Wall clock time and date at job start Tue Mar 31 2020 10:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47283 * 2 1 4 4 N 1.41597 * 113.99891 * 179.97438 * 3 2 1 5 5 C 1.34770 * 120.00289 * 89.99979 * 4 3 2 6 6 O 1.21284 * 120.00136 * 179.97438 * 5 4 3 7 7 C 1.50703 * 120.00077 * 0.02562 * 5 4 3 8 8 C 1.52995 * 109.47313 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47575 * 53.80284 * 8 7 5 10 10 C 1.50707 * 109.46800 * 293.80232 * 8 7 5 11 11 H 1.07996 * 119.99939 * 324.79144 * 10 8 7 12 12 C 1.37876 * 119.99516 * 144.79724 * 10 8 7 13 13 N 1.31517 * 119.99498 * 181.40280 * 12 10 8 14 14 Si 1.86799 * 120.00347 * 1.40222 * 12 10 8 15 15 H 1.48496 * 109.47059 * 267.09616 * 14 12 10 16 16 H 1.48498 * 109.46945 * 27.10055 * 14 12 10 17 17 H 1.48502 * 109.46861 * 147.09689 * 14 12 10 18 18 C 1.50699 * 109.46966 * 173.80520 * 8 7 5 19 19 C 1.38237 * 120.00135 * 66.64777 * 18 8 7 20 20 C 1.38238 * 119.99736 * 179.81082 * 19 18 8 21 21 C 1.38232 * 120.00406 * 0.39259 * 20 19 18 22 22 C 1.38239 * 119.99545 * 359.86027 * 21 20 19 23 23 C 1.38229 * 120.00171 * 359.95262 * 22 21 20 24 24 C 1.46506 * 119.99826 * 269.99867 * 4 3 2 25 25 C 1.53000 * 109.46876 * 120.00361 * 24 4 3 26 26 C 1.53005 * 109.46999 * 240.00147 * 24 4 3 27 27 H 1.09003 * 109.47323 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47493 * 300.00593 * 1 2 3 29 29 H 1.09007 * 109.47111 * 60.00225 * 1 2 3 30 30 H 1.08994 * 109.47482 * 239.99884 * 2 1 3 31 31 H 1.09007 * 109.47111 * 119.99775 * 2 1 3 32 32 H 1.09004 * 109.46905 * 59.99256 * 7 5 4 33 33 H 1.09003 * 109.46623 * 300.00340 * 7 5 4 34 34 H 0.96996 * 119.99967 * 179.97438 * 13 12 10 35 35 H 1.07999 * 120.00352 * 359.97438 * 19 18 8 36 36 H 1.08008 * 119.99812 * 180.22764 * 20 19 18 37 37 H 1.07995 * 120.00043 * 179.83073 * 21 20 19 38 38 H 1.08003 * 119.99758 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99873 * 180.02562 * 23 22 21 40 40 H 1.08996 * 109.47371 * 0.02562 * 24 4 3 41 41 H 1.08996 * 109.47168 * 59.99817 * 25 24 4 42 42 H 1.09005 * 109.46808 * 179.97438 * 25 24 4 43 43 H 1.08996 * 109.47141 * 299.99364 * 25 24 4 44 44 H 1.09004 * 109.47001 * 60.00022 * 26 24 4 45 45 H 1.08999 * 109.46581 * 180.02562 * 26 24 4 46 46 H 1.08996 * 109.47186 * 300.00269 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4179 1.4590 0.0006 5 6 4.0902 1.5120 -1.1663 6 8 5.2992 1.6082 -1.1657 7 6 3.3396 1.4530 -2.4717 8 6 4.3313 1.5305 -3.6342 9 1 5.0914 0.7582 -3.5156 10 6 4.9897 2.8861 -3.6432 11 1 4.4275 3.7614 -3.3531 12 6 6.3097 3.0088 -4.0220 13 7 6.8922 4.1878 -4.0035 14 14 7.2707 1.5006 -4.5616 15 1 7.9824 0.9231 -3.3932 16 1 6.3354 0.4914 -5.1200 17 1 8.2583 1.8886 -5.6006 18 6 3.5989 1.3190 -4.9342 19 6 2.6800 2.2553 -5.3700 20 6 2.0112 2.0632 -6.5645 21 6 2.2551 0.9309 -7.3190 22 6 3.1702 -0.0078 -6.8805 23 6 3.8419 0.1861 -5.6881 24 6 4.1476 1.5171 1.2697 25 6 5.1230 0.3412 1.3513 26 6 4.9258 2.8319 1.3508 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.6449 2.2910 -2.5296 33 1 2.7848 0.5165 -2.5297 34 1 7.8209 4.2742 -4.2696 35 1 2.4866 3.1381 -4.7788 36 1 1.2959 2.7965 -6.9068 37 1 1.7305 0.7796 -8.2508 38 1 3.3606 -0.8927 -7.4698 39 1 4.5572 -0.5472 -5.3457 40 1 3.4412 1.4608 2.0979 41 1 5.8295 0.3970 0.5231 42 1 5.6663 0.3846 2.2953 43 1 4.5686 -0.5955 1.2935 44 1 4.2308 3.6696 1.2927 45 1 5.4690 2.8748 2.2949 46 1 5.6322 2.8877 0.5227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844074308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:10 Heat of formation + Delta-G solvation = -11.647786 kcal Electronic energy + Delta-G solvation = -26339.827484 eV Core-core repulsion = 22810.628819 eV Total energy + Delta-G solvation = -3529.198666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.67581 -38.52214 -37.12885 -35.08412 -33.84914 -31.88188 -31.55047 -30.19514 -29.64041 -28.49928 -26.95471 -25.86323 -22.99593 -22.82729 -21.98958 -21.62888 -19.59025 -19.25098 -17.34468 -16.92043 -16.28625 -15.91022 -15.38709 -14.88812 -14.68662 -14.31732 -14.13685 -13.81735 -13.71275 -13.48727 -13.03425 -12.84208 -12.72515 -12.53757 -12.42346 -12.33049 -12.09750 -12.07102 -11.87137 -11.58310 -11.42586 -11.12735 -10.95562 -10.86974 -10.74245 -10.51583 -10.35860 -10.16171 -9.83037 -9.60339 -9.11474 -8.83372 -8.56512 -8.40361 -8.18569 -7.79754 -5.96489 -3.93973 2.10411 2.13075 2.22165 3.26758 3.43461 3.48143 3.50229 4.33578 4.53951 4.59862 4.91398 5.03467 5.05758 5.23714 5.29450 5.32466 5.38119 5.49190 5.52975 5.57980 5.69087 5.71422 5.74895 5.83483 5.90304 5.96062 5.96664 6.03572 6.10859 6.11428 6.17651 6.27682 6.35478 6.46082 6.65102 6.69327 6.71174 6.84737 6.92438 7.03339 7.15815 7.28376 7.59131 7.74237 7.84184 7.93848 8.55368 8.81193 9.03269 9.67995 11.16426 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.006341 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.335965 B = 4414.899169 C = 6050.132971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.021 3.979 3 O -0.144 6.144 4 N -0.488 5.488 5 C 0.529 3.471 6 O -0.477 6.477 7 C -0.110 4.110 8 C 0.056 3.944 9 H 0.048 0.952 10 C -0.489 4.489 11 H 0.072 0.928 12 C 0.087 3.913 13 N -0.898 5.898 14 Si 0.868 3.132 15 H -0.277 1.277 16 H -0.256 1.256 17 H -0.295 1.295 18 C -0.040 4.040 19 C -0.099 4.099 20 C -0.128 4.128 21 C -0.149 4.149 22 C -0.128 4.128 23 C -0.135 4.135 24 C 0.149 3.851 25 C -0.174 4.174 26 C -0.168 4.168 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.261 0.739 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.239 -9.601 6.939 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.058 4.058 3 O -0.150 6.150 4 N -0.270 5.270 5 C 0.320 3.680 6 O -0.348 6.348 7 C -0.150 4.150 8 C 0.036 3.964 9 H 0.066 0.934 10 C -0.525 4.525 11 H 0.090 0.910 12 C -0.116 4.116 13 N -0.536 5.536 14 Si 0.696 3.304 15 H -0.202 1.202 16 H -0.180 1.180 17 H -0.222 1.222 18 C -0.041 4.041 19 C -0.117 4.117 20 C -0.146 4.146 21 C -0.167 4.167 22 C -0.146 4.146 23 C -0.154 4.154 24 C 0.048 3.952 25 C -0.232 4.232 26 C -0.226 4.226 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.472 -9.261 6.888 15.585 hybrid contribution 0.497 -0.930 -0.312 1.100 sum -9.975 -10.191 6.575 15.704 Atomic orbital electron populations 1.21702 0.92690 1.02621 1.03388 1.23038 0.95626 0.86014 1.01079 1.90620 1.03147 1.24466 1.96737 1.50633 0.93874 1.76004 1.06450 1.21009 0.87875 0.74965 0.84177 1.90726 1.13068 1.46115 1.84896 1.21653 0.99248 1.01873 0.92262 1.18161 0.92459 0.99692 0.86049 0.93363 1.20611 0.96031 0.90985 1.44923 0.91015 1.24871 0.97266 0.95301 0.94140 1.69888 1.12427 1.23084 1.48161 0.86988 0.80333 0.84699 0.78389 1.20244 1.17991 1.22155 1.20746 0.93036 0.91638 0.98632 1.20994 0.95996 0.98820 0.95885 1.21059 1.00476 0.97412 0.95646 1.20858 1.00279 0.95699 0.99870 1.20953 0.97784 0.99075 0.96785 1.21135 1.00309 0.98110 0.95799 1.21169 0.92897 0.96373 0.84783 1.22324 1.00371 0.96828 1.03667 1.22210 1.01332 0.95677 1.03416 0.90753 0.91786 0.91337 0.92401 0.92914 0.89270 0.91789 0.92900 0.86147 0.87186 0.87459 0.87442 0.87132 0.89916 0.89729 0.91660 0.93255 0.92408 0.91985 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.90 16 2 C 0.02 0.24 7.09 37.16 0.26 0.50 16 3 O -0.14 -2.15 10.47 -11.47 -0.12 -2.27 16 4 N -0.49 -8.15 2.90 -53.80 -0.16 -8.31 16 5 C 0.53 10.65 6.93 -10.99 -0.08 10.58 16 6 O -0.48 -11.20 11.23 5.55 0.06 -11.14 16 7 C -0.11 -2.16 4.27 -27.88 -0.12 -2.28 16 8 C 0.06 1.28 1.17 -92.92 -0.11 1.17 16 9 H 0.05 1.16 4.94 -51.93 -0.26 0.91 16 10 C -0.49 -13.36 6.87 -34.44 -0.24 -13.60 16 11 H 0.07 2.14 8.06 -52.49 -0.42 1.71 16 12 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 13 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 14 Si 0.87 22.41 27.00 -169.99 -4.59 17.82 16 15 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.26 -6.10 4.72 56.52 0.27 -5.83 16 17 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 18 C -0.04 -0.84 4.65 -104.62 -0.49 -1.33 16 19 C -0.10 -1.96 8.93 -39.58 -0.35 -2.31 16 20 C -0.13 -2.21 10.05 -39.58 -0.40 -2.60 16 21 C -0.15 -2.44 10.05 -39.58 -0.40 -2.83 16 22 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 23 C -0.14 -2.65 8.70 -39.59 -0.34 -3.00 16 24 C 0.15 2.17 3.54 -67.92 -0.24 1.93 16 25 C -0.17 -2.38 9.12 37.16 0.34 -2.05 16 26 C -0.17 -2.61 9.12 37.16 0.34 -2.27 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.69 7.13 -51.93 -0.37 0.32 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.74 8.05 -51.93 -0.42 1.32 16 33 H 0.06 1.09 7.13 -51.93 -0.37 0.72 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.12 2.40 7.87 -52.49 -0.41 1.99 16 36 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.11 2.11 7.12 -52.48 -0.37 1.74 16 40 H 0.08 1.02 8.12 -51.93 -0.42 0.59 16 41 H 0.08 1.43 6.17 -51.93 -0.32 1.11 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.73 6.17 -51.93 -0.32 1.41 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -32.15 369.17 -8.01 -40.16 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.61 Total: 4.48 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -1.93 Total: -19.17 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.62 Total: -35.44 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.06 Total: -13.40 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.59 Total: 17.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.15 -8.01 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844074308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.507 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds