Wall clock time and date at job start Tue Mar 31 2020 10:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47283 * 2 1 4 4 N 1.41597 * 113.99891 * 179.97438 * 3 2 1 5 5 C 1.34770 * 120.00289 * 89.99979 * 4 3 2 6 6 O 1.21284 * 120.00136 * 179.97438 * 5 4 3 7 7 C 1.50703 * 120.00077 * 0.02562 * 5 4 3 8 8 C 1.52995 * 109.47313 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47575 * 53.80284 * 8 7 5 10 10 C 1.50707 * 109.46800 * 293.80232 * 8 7 5 11 11 H 1.07996 * 119.99939 * 324.79144 * 10 8 7 12 12 C 1.37876 * 119.99516 * 144.79724 * 10 8 7 13 13 N 1.31517 * 119.99498 * 181.40280 * 12 10 8 14 14 Si 1.86799 * 120.00347 * 1.40222 * 12 10 8 15 15 H 1.48496 * 109.47059 * 267.09616 * 14 12 10 16 16 H 1.48498 * 109.46945 * 27.10055 * 14 12 10 17 17 H 1.48502 * 109.46861 * 147.09689 * 14 12 10 18 18 C 1.50699 * 109.46966 * 173.80520 * 8 7 5 19 19 C 1.38237 * 120.00135 * 66.64777 * 18 8 7 20 20 C 1.38238 * 119.99736 * 179.81082 * 19 18 8 21 21 C 1.38232 * 120.00406 * 0.39259 * 20 19 18 22 22 C 1.38239 * 119.99545 * 359.86027 * 21 20 19 23 23 C 1.38229 * 120.00171 * 359.95262 * 22 21 20 24 24 C 1.46506 * 119.99826 * 269.99867 * 4 3 2 25 25 C 1.53000 * 109.46876 * 120.00361 * 24 4 3 26 26 C 1.53005 * 109.46999 * 240.00147 * 24 4 3 27 27 H 1.09003 * 109.47323 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47493 * 300.00593 * 1 2 3 29 29 H 1.09007 * 109.47111 * 60.00225 * 1 2 3 30 30 H 1.08994 * 109.47482 * 239.99884 * 2 1 3 31 31 H 1.09007 * 109.47111 * 119.99775 * 2 1 3 32 32 H 1.09004 * 109.46905 * 59.99256 * 7 5 4 33 33 H 1.09003 * 109.46623 * 300.00340 * 7 5 4 34 34 H 0.96996 * 119.99967 * 179.97438 * 13 12 10 35 35 H 1.07999 * 120.00352 * 359.97438 * 19 18 8 36 36 H 1.08008 * 119.99812 * 180.22764 * 20 19 18 37 37 H 1.07995 * 120.00043 * 179.83073 * 21 20 19 38 38 H 1.08003 * 119.99758 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99873 * 180.02562 * 23 22 21 40 40 H 1.08996 * 109.47371 * 0.02562 * 24 4 3 41 41 H 1.08996 * 109.47168 * 59.99817 * 25 24 4 42 42 H 1.09005 * 109.46808 * 179.97438 * 25 24 4 43 43 H 1.08996 * 109.47141 * 299.99364 * 25 24 4 44 44 H 1.09004 * 109.47001 * 60.00022 * 26 24 4 45 45 H 1.08999 * 109.46581 * 180.02562 * 26 24 4 46 46 H 1.08996 * 109.47186 * 300.00269 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4179 1.4590 0.0006 5 6 4.0902 1.5120 -1.1663 6 8 5.2992 1.6082 -1.1657 7 6 3.3396 1.4530 -2.4717 8 6 4.3313 1.5305 -3.6342 9 1 5.0914 0.7582 -3.5156 10 6 4.9897 2.8861 -3.6432 11 1 4.4275 3.7614 -3.3531 12 6 6.3097 3.0088 -4.0220 13 7 6.8922 4.1878 -4.0035 14 14 7.2707 1.5006 -4.5616 15 1 7.9824 0.9231 -3.3932 16 1 6.3354 0.4914 -5.1200 17 1 8.2583 1.8886 -5.6006 18 6 3.5989 1.3190 -4.9342 19 6 2.6800 2.2553 -5.3700 20 6 2.0112 2.0632 -6.5645 21 6 2.2551 0.9309 -7.3190 22 6 3.1702 -0.0078 -6.8805 23 6 3.8419 0.1861 -5.6881 24 6 4.1476 1.5171 1.2697 25 6 5.1230 0.3412 1.3513 26 6 4.9258 2.8319 1.3508 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.6449 2.2910 -2.5296 33 1 2.7848 0.5165 -2.5297 34 1 7.8209 4.2742 -4.2696 35 1 2.4866 3.1381 -4.7788 36 1 1.2959 2.7965 -6.9068 37 1 1.7305 0.7796 -8.2508 38 1 3.3606 -0.8927 -7.4698 39 1 4.5572 -0.5472 -5.3457 40 1 3.4412 1.4608 2.0979 41 1 5.8295 0.3970 0.5231 42 1 5.6663 0.3846 2.2953 43 1 4.5686 -0.5955 1.2935 44 1 4.2308 3.6696 1.2927 45 1 5.4690 2.8748 2.2949 46 1 5.6322 2.8877 0.5227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844074308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:09 Heat of formation + Delta-G solvation = -29.909700 kcal Electronic energy + Delta-G solvation = -26340.619380 eV Core-core repulsion = 22810.628819 eV Total energy + Delta-G solvation = -3529.990562 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15151 -39.96911 -38.43034 -36.46203 -35.49679 -33.74559 -32.80518 -31.61083 -30.94120 -29.90384 -28.14493 -27.74711 -24.63158 -23.76436 -23.40317 -23.01462 -21.12970 -20.67424 -19.01992 -18.80488 -17.60515 -17.24020 -16.70294 -16.47874 -15.99796 -15.82240 -15.47275 -15.40428 -15.03871 -15.00631 -14.62501 -14.26478 -14.17165 -13.94186 -13.74866 -13.68269 -13.36500 -13.20266 -13.07842 -13.01869 -12.78499 -12.65197 -12.44517 -12.20264 -12.16485 -12.04409 -11.91297 -11.77633 -11.48849 -11.22242 -11.03079 -10.67301 -10.33827 -9.91430 -9.61735 -9.30527 -8.21258 -6.19114 0.67811 0.71965 0.96567 1.32929 1.36693 1.42958 1.71270 2.41633 3.05276 3.10371 3.26723 3.92305 4.05184 4.07887 4.13550 4.13954 4.25029 4.27884 4.28662 4.32441 4.38896 4.46355 4.48214 4.61036 4.67018 4.71570 4.78432 4.84919 4.85687 4.90168 4.97703 4.99728 5.11604 5.18016 5.26771 5.32005 5.37115 5.39024 5.40422 5.62468 5.68318 5.76462 5.82178 6.03141 6.32987 6.37051 6.60960 6.79956 7.30763 7.44958 8.95797 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.006341 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.335965 B = 4414.899169 C = 6050.132971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.013 3.987 3 O -0.153 6.153 4 N -0.484 5.484 5 C 0.523 3.477 6 O -0.521 6.521 7 C -0.104 4.104 8 C 0.061 3.939 9 H 0.035 0.965 10 C -0.467 4.467 11 H 0.030 0.970 12 C 0.026 3.974 13 N -0.952 5.952 14 Si 0.920 3.080 15 H -0.286 1.286 16 H -0.224 1.224 17 H -0.297 1.297 18 C -0.066 4.066 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.123 4.123 23 C -0.150 4.150 24 C 0.145 3.855 25 C -0.166 4.166 26 C -0.165 4.165 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.258 0.742 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.093 0.907 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 -12.568 6.483 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 O -0.158 6.158 4 N -0.264 5.264 5 C 0.313 3.687 6 O -0.396 6.396 7 C -0.144 4.144 8 C 0.041 3.959 9 H 0.054 0.946 10 C -0.505 4.505 11 H 0.048 0.952 12 C -0.171 4.171 13 N -0.594 5.594 14 Si 0.746 3.254 15 H -0.213 1.213 16 H -0.147 1.147 17 H -0.224 1.224 18 C -0.066 4.066 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.156 4.156 22 C -0.141 4.141 23 C -0.168 4.168 24 C 0.045 3.955 25 C -0.224 4.224 26 C -0.223 4.223 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.129 -12.260 6.451 19.086 hybrid contribution 1.078 -0.008 -0.126 1.085 sum -12.051 -12.268 6.325 18.323 Atomic orbital electron populations 1.21729 0.90367 1.04261 1.03425 1.23324 0.97307 0.84206 1.01590 1.90606 1.01336 1.27079 1.96816 1.50422 0.95091 1.74649 1.06239 1.21038 0.87483 0.74843 0.85320 1.90720 1.14774 1.48223 1.85902 1.21523 0.98456 1.03052 0.91319 1.17997 0.92961 0.96167 0.88729 0.94635 1.20763 0.95516 0.91977 1.42226 0.95177 1.25608 0.98592 0.97653 0.95202 1.70037 1.12657 1.25314 1.51354 0.86160 0.79320 0.82370 0.77565 1.21300 1.14672 1.22412 1.20496 0.94672 0.93543 0.97905 1.20994 0.97051 0.98326 0.97388 1.21382 1.00108 0.98492 0.94382 1.21338 0.99268 0.94344 1.00664 1.21344 0.96732 1.00290 0.95746 1.21253 1.01069 0.97667 0.96823 1.21415 0.93545 0.95999 0.84537 1.22244 0.99674 0.97026 1.03502 1.22154 1.00592 0.96382 1.03124 0.88260 0.91094 0.91989 0.92954 0.91342 0.89791 0.88953 0.93301 0.87860 0.84466 0.83475 0.84007 0.87005 0.86497 0.93475 0.88962 0.91778 0.93100 0.88873 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.01 0.28 7.09 71.98 0.51 0.79 16 3 O -0.15 -4.37 10.47 -38.78 -0.41 -4.77 16 4 N -0.48 -16.13 2.90 -442.52 -1.29 -17.41 16 5 C 0.52 21.77 6.93 87.66 0.61 22.38 16 6 O -0.52 -25.91 11.23 -3.04 -0.03 -25.95 16 7 C -0.10 -4.16 4.27 29.85 0.13 -4.04 16 8 C 0.06 2.86 1.17 -12.29 -0.01 2.84 16 9 H 0.04 1.75 4.94 -2.39 -0.01 1.73 16 10 C -0.47 -27.02 6.87 25.60 0.18 -26.84 16 11 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 12 C 0.03 1.58 5.47 84.65 0.46 2.04 16 13 N -0.95 -62.81 13.96 21.45 0.30 -62.51 16 14 Si 0.92 47.87 27.00 68.60 1.85 49.72 16 15 H -0.29 -15.24 7.11 99.48 0.71 -14.54 16 16 H -0.22 -10.36 4.72 99.48 0.47 -9.89 16 17 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 18 C -0.07 -2.75 4.65 -19.87 -0.09 -2.84 16 19 C -0.12 -4.70 8.93 22.27 0.20 -4.50 16 20 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 21 C -0.14 -3.89 10.05 22.27 0.22 -3.67 16 22 C -0.12 -3.72 10.05 22.27 0.22 -3.49 16 23 C -0.15 -5.56 8.70 22.27 0.19 -5.36 16 24 C 0.15 4.08 3.54 44.99 0.16 4.24 16 25 C -0.17 -4.39 9.12 71.98 0.66 -3.74 16 26 C -0.16 -5.20 9.12 71.98 0.66 -4.55 16 27 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.05 1.15 7.13 -2.39 -0.02 1.13 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 3.42 8.05 -2.38 -0.02 3.41 16 33 H 0.09 3.13 7.13 -2.39 -0.02 3.11 16 34 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 35 H 0.10 4.30 7.87 -2.91 -0.02 4.28 16 36 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 37 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.11 4.03 7.12 -2.91 -0.02 4.01 16 40 H 0.12 2.52 8.12 -2.39 -0.02 2.50 16 41 H 0.05 1.63 6.17 -2.39 -0.01 1.62 16 42 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.04 1.78 6.17 -2.39 -0.01 1.76 16 Total: -1.00 -76.00 369.17 6.19 -69.82 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.71 Total: 22.96 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 5.05 Total: -31.84 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -0.99 Total: -79.93 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.44 Total: -30.72 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.85 Total: 49.72 kcal Total: -76.00 6.19 -69.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844074308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.906 kcal (2) G-P(sol) polarization free energy of solvation -76.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds