Wall clock time and date at job start Tue Mar 31 2020 10:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42893 * 109.47351 * 2 1 4 4 N 1.41597 * 114.00160 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00161 * 90.00234 * 4 3 2 6 6 O 1.21280 * 120.00509 * 180.02562 * 5 4 3 7 7 C 1.50707 * 119.99871 * 359.97438 * 5 4 3 8 8 C 1.52998 * 109.47074 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.47228 * 304.99961 * 8 7 5 10 10 C 1.50696 * 109.47262 * 64.99736 * 8 7 5 11 11 H 1.08004 * 120.00649 * 234.67535 * 10 8 7 12 12 C 1.37877 * 120.00082 * 54.67803 * 10 8 7 13 13 N 1.31521 * 120.00059 * 4.89162 * 12 10 8 14 14 Si 1.86805 * 120.00336 * 184.88695 * 12 10 8 15 15 H 1.48504 * 109.46611 * 90.00235 * 14 12 10 16 16 H 1.48497 * 109.47335 * 209.99927 * 14 12 10 17 17 H 1.48496 * 109.46969 * 330.00325 * 14 12 10 18 18 C 1.50696 * 109.46967 * 185.00021 * 8 7 5 19 19 C 1.38239 * 120.00187 * 151.48635 * 18 8 7 20 20 C 1.38228 * 120.00106 * 179.79141 * 19 18 8 21 21 C 1.38234 * 119.99857 * 0.43242 * 20 19 18 22 22 C 1.38227 * 120.00171 * 359.81703 * 21 20 19 23 23 C 1.38234 * 120.00163 * 359.97438 * 22 21 20 24 24 C 1.46501 * 120.00046 * 270.27287 * 4 3 2 25 25 C 1.53004 * 109.46664 * 119.72647 * 24 4 3 26 26 C 1.52995 * 109.47508 * 239.72203 * 24 4 3 27 27 H 1.08996 * 109.46867 * 60.00084 * 1 2 3 28 28 H 1.09002 * 109.47214 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47082 * 299.99686 * 1 2 3 30 30 H 1.09007 * 109.46996 * 239.99797 * 2 1 3 31 31 H 1.09007 * 109.47149 * 120.00250 * 2 1 3 32 32 H 1.09005 * 109.46865 * 299.99972 * 7 5 4 33 33 H 1.08998 * 109.46651 * 60.00063 * 7 5 4 34 34 H 0.96994 * 120.00348 * 179.97438 * 13 12 10 35 35 H 1.08008 * 119.99451 * 359.97438 * 19 18 8 36 36 H 1.08005 * 120.00325 * 180.27268 * 20 19 18 37 37 H 1.08010 * 119.99711 * 179.83732 * 21 20 19 38 38 H 1.08002 * 120.00305 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00387 * 180.02562 * 23 22 21 40 40 H 1.08995 * 109.47449 * 359.73090 * 24 4 3 41 41 H 1.08997 * 109.47548 * 60.00228 * 25 24 4 42 42 H 1.09001 * 109.46679 * 180.02562 * 25 24 4 43 43 H 1.09004 * 109.47216 * 299.99917 * 25 24 4 44 44 H 1.09005 * 109.46969 * 60.00246 * 26 24 4 45 45 H 1.09001 * 109.47277 * 179.97438 * 26 24 4 46 46 H 1.08998 * 109.47711 * 300.00392 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 7 3.4179 1.4590 -0.0006 5 6 4.0892 1.5124 -1.1680 6 8 5.2983 1.6077 -1.1686 7 6 3.3376 1.4526 -2.4729 8 6 4.3282 1.5308 -3.6362 9 1 4.9439 2.4240 -3.5298 10 6 5.2103 0.3090 -3.6278 11 1 6.2847 0.4185 -3.6129 12 6 4.6459 -0.9489 -3.6393 13 7 3.3427 -1.0839 -3.7546 14 14 5.7320 -2.4615 -3.4912 15 1 5.8919 -2.8176 -2.0583 16 1 5.1035 -3.5951 -4.2158 17 1 7.0640 -2.1741 -4.0814 18 6 3.5709 1.5947 -4.9375 19 6 4.1257 2.2358 -6.0293 20 6 3.4329 2.2908 -7.2242 21 6 2.1814 1.7123 -7.3246 22 6 1.6244 1.0757 -6.2314 23 6 2.3191 1.0171 -5.0377 24 6 4.1492 1.5106 1.2678 25 6 5.1198 0.3304 1.3452 26 6 4.9330 2.8218 1.3517 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.7835 0.5156 -2.5303 33 1 2.6423 2.2901 -2.5303 34 1 2.9456 -1.9688 -3.7630 35 1 5.1018 2.6913 -5.9496 36 1 3.8682 2.7878 -8.0785 37 1 1.6389 1.7575 -8.2575 38 1 0.6464 0.6242 -6.3097 39 1 1.8841 0.5193 -4.1837 40 1 3.4434 1.4554 2.0966 41 1 5.8256 0.3855 0.5165 42 1 5.6636 0.3686 2.2891 43 1 4.5614 -0.6038 1.2855 44 1 4.2415 3.6626 1.2966 45 1 5.4767 2.8604 2.2957 46 1 5.6388 2.8770 0.5230 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844074337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:13 Heat of formation + Delta-G solvation = -20.612765 kcal Electronic energy + Delta-G solvation = -26793.041155 eV Core-core repulsion = 23263.453739 eV Total energy + Delta-G solvation = -3529.587416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.04144 -39.77791 -38.33706 -36.51531 -35.55276 -33.08225 -32.66987 -31.43181 -30.72043 -29.66331 -28.12912 -27.64170 -24.71111 -23.74538 -23.31377 -22.72728 -21.25892 -20.60315 -18.88271 -17.99310 -17.51469 -17.07538 -16.88878 -16.50115 -15.93239 -15.69695 -15.43512 -15.24562 -15.02220 -14.80549 -14.53346 -14.21629 -13.85100 -13.71979 -13.42603 -13.35980 -13.21889 -13.11408 -13.00021 -12.94472 -12.82652 -12.67195 -12.50264 -12.26920 -12.14889 -12.03817 -11.86718 -11.69195 -11.21892 -11.05665 -11.00515 -10.54558 -10.14125 -9.85529 -9.39982 -9.11705 -7.94378 -6.10894 0.88789 0.99909 1.02551 1.34181 1.37153 1.45284 1.87969 2.43436 3.19031 3.20955 3.37851 3.93291 4.08526 4.12189 4.20869 4.26655 4.32860 4.37531 4.42214 4.48169 4.52930 4.67179 4.70190 4.73284 4.78507 4.84568 4.88519 4.93056 5.00917 5.02978 5.08874 5.14311 5.24134 5.32717 5.37089 5.39128 5.53976 5.60389 5.67244 5.71671 5.90476 5.94645 6.09031 6.35101 6.42126 6.57974 6.67443 6.84189 7.40697 7.51416 8.94633 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.005963 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.503746 B = 4694.707935 C = 5183.413687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.018 3.982 3 O -0.149 6.149 4 N -0.487 5.487 5 C 0.531 3.469 6 O -0.532 6.532 7 C -0.123 4.123 8 C 0.089 3.911 9 H 0.015 0.985 10 C -0.489 4.489 11 H 0.031 0.969 12 C 0.036 3.964 13 N -0.884 5.884 14 Si 0.926 3.074 15 H -0.284 1.284 16 H -0.279 1.279 17 H -0.284 1.284 18 C -0.053 4.053 19 C -0.151 4.151 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.081 4.081 24 C 0.141 3.859 25 C -0.168 4.168 26 C -0.159 4.159 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.261 0.739 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.047 0.953 42 H 0.095 0.905 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 2.934 7.188 10.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.060 4.060 3 O -0.155 6.155 4 N -0.266 5.266 5 C 0.323 3.677 6 O -0.409 6.409 7 C -0.163 4.163 8 C 0.070 3.930 9 H 0.034 0.966 10 C -0.527 4.527 11 H 0.049 0.951 12 C -0.163 4.163 13 N -0.523 5.523 14 Si 0.754 3.246 15 H -0.211 1.211 16 H -0.205 1.205 17 H -0.209 1.209 18 C -0.053 4.053 19 C -0.169 4.169 20 C -0.157 4.157 21 C -0.166 4.166 22 C -0.165 4.165 23 C -0.099 4.099 24 C 0.041 3.959 25 C -0.226 4.226 26 C -0.216 4.216 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.130 0.870 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.746 3.002 7.181 10.300 hybrid contribution 0.909 -1.425 -0.048 1.691 sum -5.837 1.577 7.133 9.351 Atomic orbital electron populations 1.21683 0.90049 1.04008 1.03530 1.23208 0.97526 0.84493 1.00798 1.90543 1.01750 1.26393 1.96797 1.50525 0.94974 1.74688 1.06432 1.21196 0.87439 0.73690 0.85327 1.90582 1.14508 1.49630 1.86153 1.21730 0.99130 1.04270 0.91122 1.17547 0.92098 0.94943 0.88427 0.96649 1.20931 0.91878 0.91104 1.48795 0.95093 1.25219 0.96079 0.99784 0.95225 1.69790 1.09265 1.22810 1.50399 0.86049 0.79747 0.81117 0.77651 1.21058 1.20454 1.20904 1.20316 0.93878 0.94296 0.96856 1.21070 0.99710 1.02000 0.94102 1.21155 0.95816 1.01619 0.97110 1.21195 0.96205 1.00243 0.98930 1.21349 1.00471 1.00884 0.93785 1.21280 0.94234 0.95789 0.98605 1.21442 0.93429 0.96433 0.84617 1.22255 0.99938 0.96950 1.03502 1.22123 1.00497 0.95578 1.03444 0.91943 0.88912 0.90440 0.94108 0.92137 0.85848 0.92179 0.92920 0.87822 0.84924 0.84553 0.85637 0.85580 0.86975 0.93346 0.88611 0.93638 0.92260 0.88747 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 10.28 71.98 0.74 -2.15 16 2 C 0.02 0.52 7.09 71.98 0.51 1.03 16 3 O -0.15 -5.02 10.47 -38.78 -0.41 -5.43 16 4 N -0.49 -17.97 2.91 -442.53 -1.29 -19.25 16 5 C 0.53 23.87 6.93 87.66 0.61 24.48 16 6 O -0.53 -26.50 11.19 -3.03 -0.03 -26.54 16 7 C -0.12 -5.67 3.38 29.85 0.10 -5.57 16 8 C 0.09 4.51 1.97 -12.29 -0.02 4.49 16 9 H 0.02 0.80 7.91 -2.38 -0.02 0.78 16 10 C -0.49 -27.16 7.27 25.60 0.19 -26.98 16 11 H 0.03 1.84 7.82 -2.91 -0.02 1.81 16 12 C 0.04 1.94 5.12 84.65 0.43 2.37 16 13 N -0.88 -44.98 7.99 21.45 0.17 -44.81 16 14 Si 0.93 44.16 29.54 68.60 2.03 46.19 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 18 C -0.05 -2.50 4.69 -19.87 -0.09 -2.60 16 19 C -0.15 -6.53 9.71 22.27 0.22 -6.31 16 20 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 21 C -0.15 -5.14 10.05 22.27 0.22 -4.92 16 22 C -0.15 -5.59 10.05 22.27 0.22 -5.36 16 23 C -0.08 -3.58 7.45 22.27 0.17 -3.41 16 24 C 0.14 4.22 3.54 44.99 0.16 4.38 16 25 C -0.17 -5.20 9.12 71.98 0.66 -4.54 16 26 C -0.16 -4.47 9.12 71.98 0.66 -3.81 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.46 7.13 -2.38 -0.02 1.44 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.12 5.94 3.69 -2.38 -0.01 5.93 16 33 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.26 12.83 8.31 -92.71 -0.77 12.06 16 35 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.13 5.83 5.18 -2.91 -0.02 5.82 16 40 H 0.11 2.69 8.12 -2.39 -0.02 2.67 16 41 H 0.05 1.89 6.18 -2.39 -0.01 1.88 16 42 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.05 1.78 6.16 -2.39 -0.01 1.77 16 Total: -1.00 -62.10 365.23 6.41 -55.69 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.95 Total: 27.94 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 4.99 Total: -33.78 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -1.11 Total: -64.07 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.44 Total: -31.96 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -62.10 6.41 -55.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844074337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.074 kcal (2) G-P(sol) polarization free energy of solvation -62.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds