Wall clock time and date at job start Tue Mar 31 2020 10:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 117.00134 * 2 1 4 4 C 1.38563 * 120.07172 * 359.97438 * 3 2 1 5 5 C 1.38237 * 119.99891 * 180.02562 * 4 3 2 6 6 C 1.38248 * 120.14734 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.14455 * 0.02562 * 6 5 4 8 8 C 1.38555 * 119.99863 * 359.71930 * 7 6 5 9 9 O 1.36005 * 120.07511 * 180.27733 * 8 7 6 10 10 C 1.42903 * 116.99617 * 0.27486 * 9 8 7 11 11 C 1.52996 * 109.46734 * 180.02562 * 10 9 8 12 12 N 1.46894 * 109.47263 * 65.00117 * 11 10 9 13 13 C 1.46897 * 111.00262 * 66.04824 * 12 11 10 14 14 C 1.46905 * 111.00058 * 189.99753 * 12 11 10 15 15 C 1.52999 * 109.47228 * 165.57280 * 14 12 11 16 16 C 1.50705 * 115.54644 * 305.48626 * 15 14 12 17 17 H 1.08001 * 119.99517 * 144.39688 * 16 15 14 18 18 C 1.37874 * 119.99948 * 324.38973 * 16 15 14 19 19 N 1.31505 * 120.00534 * 352.04490 * 18 16 15 20 20 Si 1.86801 * 119.99618 * 172.04135 * 18 16 15 21 21 H 1.48497 * 109.47394 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.47074 * 120.00048 * 20 18 16 23 23 H 1.48496 * 109.47585 * 240.00239 * 20 18 16 24 24 C 1.52998 * 117.49924 * 159.81693 * 15 14 12 25 25 C 1.52997 * 117.50041 * 91.15520 * 15 14 12 26 26 H 1.09002 * 109.46965 * 60.00257 * 1 2 3 27 27 H 1.08995 * 109.47547 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47210 * 300.00425 * 1 2 3 29 29 H 1.08001 * 120.00145 * 359.97438 * 4 3 2 30 30 H 1.08006 * 119.93046 * 179.97438 * 5 4 3 31 31 H 1.08001 * 119.93087 * 179.97438 * 6 5 4 32 32 H 1.08006 * 119.99520 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.46924 * 299.99939 * 10 9 8 34 34 H 1.09000 * 109.46881 * 60.00300 * 10 9 8 35 35 H 1.09008 * 109.46803 * 185.00117 * 11 10 9 36 36 H 1.08998 * 109.47459 * 304.99852 * 11 10 9 37 37 H 1.08996 * 109.47406 * 61.70854 * 13 12 11 38 38 H 1.08997 * 109.47592 * 181.71822 * 13 12 11 39 39 H 1.09012 * 109.46670 * 301.71032 * 13 12 11 40 40 H 1.08997 * 109.47209 * 285.57592 * 14 12 11 41 41 H 1.08999 * 109.46983 * 45.57271 * 14 12 11 42 42 H 0.97003 * 120.00509 * 185.05367 * 19 18 16 43 43 H 1.08997 * 117.49755 * 0.02562 * 24 15 14 44 44 H 1.09006 * 117.49624 * 145.01964 * 24 15 14 45 45 H 1.08998 * 117.50192 * 214.97681 * 25 15 14 46 46 H 1.09001 * 117.49815 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3029 3.6798 -0.0005 7 6 4.0603 2.5232 0.0000 8 6 3.4359 1.2863 0.0059 9 8 4.1795 0.1476 0.0121 10 6 5.6003 0.3006 0.0183 11 6 6.2617 -1.0790 0.0241 12 7 5.9514 -1.7761 -1.2311 13 6 6.5700 -1.0969 -2.3773 14 6 6.3653 -3.1842 -1.1676 15 6 5.7186 -3.9583 -2.3179 16 6 4.2180 -3.8532 -2.4095 17 1 3.7362 -3.8310 -3.3758 18 6 3.4603 -3.7855 -1.2596 19 7 4.0266 -3.9693 -0.0871 20 14 1.6291 -3.4326 -1.3673 21 1 1.2398 -3.2664 -2.7907 22 1 0.8712 -4.5648 -0.7763 23 1 1.3202 -2.1868 -0.6205 24 6 6.3598 -5.2868 -2.7241 25 6 6.5009 -4.0601 -3.6288 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2147 2.3197 -0.0014 30 1 1.3343 4.5115 -0.0019 31 1 3.7909 4.6433 -0.0014 32 1 5.1386 2.5839 0.0000 33 1 5.9106 0.8482 -0.8716 34 1 5.9023 0.8525 0.9084 35 1 7.3415 -0.9638 0.1184 36 1 5.8834 -1.6598 0.8654 37 1 7.6538 -1.1034 -2.2620 38 1 6.2993 -1.6160 -3.2968 39 1 6.2157 -0.0670 -2.4239 40 1 7.4502 -3.2481 -1.2512 41 1 6.0482 -3.6136 -0.2172 42 1 3.4827 -3.9947 0.7157 43 1 7.2421 -5.6094 -2.1714 44 1 5.6963 -6.0846 -3.0579 45 1 5.9303 -4.0515 -4.5575 46 1 7.4762 -3.5752 -3.6718 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877984315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:04 Heat of formation + Delta-G solvation = -16.607824 kcal Electronic energy + Delta-G solvation = -26429.707072 eV Core-core repulsion = 22900.293323 eV Total energy + Delta-G solvation = -3529.413749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37286 -39.69666 -38.98142 -37.74244 -36.45768 -33.92516 -31.55044 -31.20263 -29.91726 -28.27740 -28.07045 -27.31066 -25.42123 -23.25092 -23.10835 -22.89526 -21.47558 -20.68681 -19.57552 -18.16481 -17.99109 -17.30997 -17.21759 -16.58141 -16.50221 -15.98240 -15.72154 -15.54419 -15.41461 -15.29417 -15.08574 -14.70630 -14.15213 -13.67012 -13.54536 -13.27851 -13.19124 -13.00146 -12.91328 -12.58671 -12.50816 -12.45210 -12.23204 -12.12232 -11.98515 -11.97325 -11.86109 -11.76453 -11.50648 -11.04467 -10.77102 -10.41006 -9.81728 -9.64312 -8.68339 -8.63736 -7.81053 -5.89539 0.38253 0.56306 1.45907 1.58400 1.70263 2.43786 2.50009 2.65308 2.84736 3.15471 3.44639 3.81814 3.87957 3.99620 4.09937 4.16769 4.25825 4.30708 4.32415 4.37274 4.39017 4.49497 4.52945 4.56590 4.59070 4.63309 4.68220 4.76777 4.80196 4.84753 4.92416 4.98150 5.09456 5.18095 5.21433 5.31963 5.40252 5.46796 5.58299 5.58657 5.72925 5.87191 6.13818 6.30594 6.51346 6.64448 6.76826 6.86271 7.07158 7.73797 9.16899 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.005744 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.695779 B = 4873.732050 C = 6209.880786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.061 3.939 4 C -0.177 4.177 5 C -0.124 4.124 6 C -0.117 4.117 7 C -0.183 4.183 8 C 0.075 3.925 9 O -0.310 6.310 10 C 0.070 3.930 11 C 0.063 3.937 12 N -0.517 5.517 13 C 0.032 3.968 14 C 0.118 3.882 15 C 0.043 3.957 16 C -0.496 4.496 17 H 0.027 0.973 18 C 0.066 3.934 19 N -0.882 5.882 20 Si 0.914 3.086 21 H -0.295 1.295 22 H -0.298 1.298 23 H -0.230 1.230 24 C -0.210 4.210 25 C -0.196 4.196 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.023 0.977 38 H 0.056 0.944 39 H 0.062 0.938 40 H -0.006 1.006 41 H 0.088 0.912 42 H 0.251 0.749 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 16.729 3.020 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.016 3.984 4 C -0.196 4.196 5 C -0.142 4.142 6 C -0.135 4.135 7 C -0.201 4.201 8 C 0.029 3.971 9 O -0.224 6.224 10 C -0.005 4.005 11 C -0.065 4.065 12 N -0.240 5.240 13 C -0.116 4.116 14 C -0.010 4.010 15 C 0.042 3.958 16 C -0.533 4.533 17 H 0.045 0.955 18 C -0.136 4.136 19 N -0.519 5.519 20 Si 0.741 3.259 21 H -0.222 1.222 22 H -0.225 1.225 23 H -0.153 1.153 24 C -0.248 4.248 25 C -0.233 4.233 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.168 0.832 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.012 0.988 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.133 16.417 3.178 16.760 hybrid contribution -0.230 -0.432 -0.192 0.526 sum -1.364 15.984 2.986 16.318 Atomic orbital electron populations 1.23197 0.77887 1.04102 1.02408 1.86409 1.22375 1.26697 1.89111 1.18892 0.90088 0.86082 1.03363 1.21346 1.00719 0.91227 1.06273 1.21212 0.94987 0.97233 1.00754 1.21235 0.93948 0.98298 0.99975 1.21342 1.01357 0.90626 1.06802 1.18928 0.89122 0.87367 1.01723 1.86436 1.19391 1.28318 1.88240 1.22962 0.78194 0.97828 1.01519 1.22046 0.97059 0.93773 0.93660 1.61460 1.59241 1.01740 1.01591 1.22376 0.95426 0.98771 0.95043 1.21476 0.91228 0.87257 1.01040 1.19021 0.92663 0.93241 0.90873 1.20337 0.90398 1.51303 0.91235 0.95450 1.25083 1.00489 0.93130 0.94916 1.69845 1.34932 1.49318 0.97850 0.86302 0.82873 0.79463 0.77223 1.22164 1.22488 1.15315 1.22968 1.02570 0.93083 1.06189 1.22878 1.01122 1.03536 0.95751 0.91484 0.89205 0.90700 0.83190 0.82553 0.82572 0.83449 0.91361 0.90176 0.91984 0.92227 0.95855 0.92547 0.91965 0.98842 0.89380 0.93974 0.90572 0.91618 0.91413 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.41 113.37 1.07 1.60 16 2 O -0.33 -13.28 8.72 -79.66 -0.69 -13.97 16 3 C 0.06 2.15 6.70 22.57 0.15 2.30 16 4 C -0.18 -4.58 9.04 22.35 0.20 -4.38 16 5 C -0.12 -2.57 10.04 22.27 0.22 -2.34 16 6 C -0.12 -2.44 10.04 22.27 0.22 -2.22 16 7 C -0.18 -4.85 9.04 22.35 0.20 -4.65 16 8 C 0.07 2.67 6.70 22.56 0.15 2.82 16 9 O -0.31 -12.93 9.87 -79.74 -0.79 -13.71 16 10 C 0.07 2.28 4.80 71.98 0.35 2.62 16 11 C 0.06 2.33 5.34 86.30 0.46 2.79 16 12 N -0.52 -22.65 4.29 -922.47 -3.95 -26.60 16 13 C 0.03 1.20 9.07 127.69 1.16 2.36 16 14 C 0.12 5.60 4.04 86.30 0.35 5.95 16 15 C 0.04 2.18 1.55 -52.93 -0.08 2.10 16 16 C -0.50 -28.67 8.74 25.60 0.22 -28.45 16 17 H 0.03 1.65 7.83 -2.91 -0.02 1.63 16 18 C 0.07 3.78 5.21 84.66 0.44 4.22 16 19 N -0.88 -50.78 10.66 21.44 0.23 -50.55 16 20 Si 0.91 46.17 29.55 68.60 2.03 48.19 16 21 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 22 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 23 H -0.23 -11.12 4.17 99.48 0.41 -10.71 16 24 C -0.21 -9.79 9.96 30.62 0.30 -9.49 16 25 C -0.20 -8.65 8.34 30.62 0.26 -8.39 16 26 H 0.07 1.62 7.66 -2.39 -0.02 1.60 16 27 H 0.09 2.59 7.45 -2.39 -0.02 2.57 16 28 H 0.07 1.67 7.67 -2.38 -0.02 1.65 16 29 H 0.15 3.07 6.30 -2.91 -0.02 3.05 16 30 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.15 3.23 6.30 -2.91 -0.02 3.21 16 33 H 0.07 2.00 5.81 -2.39 -0.01 1.98 16 34 H 0.08 2.08 7.68 -2.39 -0.02 2.06 16 35 H 0.06 1.92 8.12 -2.38 -0.02 1.90 16 36 H 0.06 2.53 7.88 -2.39 -0.02 2.51 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 2.31 6.14 -2.39 -0.01 2.30 16 39 H 0.06 2.12 6.30 -2.38 -0.01 2.10 16 40 H -0.01 -0.28 8.02 -2.39 -0.02 -0.30 16 41 H 0.09 4.72 5.65 -2.39 -0.01 4.71 16 42 H 0.25 14.18 8.32 -92.71 -0.77 13.41 16 43 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 45 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.08 3.32 8.11 -2.39 -0.02 3.30 16 Total: -1.00 -70.41 363.38 3.16 -67.25 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.67 Total: 22.56 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 5.68 Total: -33.17 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -3.73 Total: -77.15 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -1.48 Total: -27.68 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -70.41 3.16 -67.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877984315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.644 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds