Wall clock time and date at job start Tue Mar 31 2020 10:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 117.00455 * 2 1 4 4 C 1.38731 * 120.06188 * 179.97438 * 3 2 1 5 5 C 1.38143 * 119.94877 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05182 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94185 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.54232 * 19.88452 * 7 6 5 9 9 C 1.53105 * 109.50866 * 259.78339 * 7 6 5 10 10 O 1.43014 * 109.25924 * 183.21632 * 9 7 6 11 11 C 1.43014 * 113.73728 * 58.66686 * 10 9 7 12 12 C 1.53100 * 109.26272 * 301.32967 * 11 10 9 13 13 N 1.47011 * 109.50802 * 139.99608 * 7 6 5 14 14 C 1.46902 * 111.00078 * 302.32716 * 13 7 6 15 15 C 1.52994 * 109.46988 * 169.99451 * 14 13 7 16 16 C 1.52996 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.38255 * 120.11434 * 0.26873 * 6 5 4 26 26 C 1.38149 * 120.05476 * 359.45402 * 25 6 5 27 27 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47235 * 300.00298 * 1 2 3 29 29 H 1.09002 * 109.46765 * 60.00565 * 1 2 3 30 30 H 1.08006 * 120.02045 * 359.95560 * 4 3 2 31 31 H 1.08000 * 119.97257 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.49729 * 303.15078 * 9 7 6 33 33 H 1.08994 * 109.50426 * 63.23566 * 9 7 6 34 34 H 1.09003 * 109.51046 * 61.26548 * 11 10 9 35 35 H 1.09003 * 109.50410 * 181.34962 * 11 10 9 36 36 H 1.08999 * 109.50319 * 296.91723 * 12 11 10 37 37 H 1.08994 * 109.50837 * 176.78609 * 12 11 10 38 38 H 1.08998 * 109.46869 * 50.00278 * 14 13 7 39 39 H 1.08994 * 109.47040 * 289.99981 * 14 13 7 40 40 H 1.09004 * 109.46806 * 60.00264 * 15 14 13 41 41 H 1.09000 * 109.47828 * 300.00569 * 15 14 13 42 42 H 1.09004 * 109.47066 * 60.00422 * 16 15 14 43 43 H 1.08994 * 109.47405 * 300.00252 * 16 15 14 44 44 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 45 45 H 1.08005 * 119.97414 * 179.70720 * 25 6 5 46 46 H 1.08004 * 120.02836 * 180.27411 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0184 -0.0005 8 1 5.0126 4.9046 -0.3495 9 6 3.9897 5.5905 1.4196 10 8 4.5725 6.8963 1.4007 11 6 3.8934 7.8175 0.5432 12 6 3.8889 7.2681 -0.8858 13 7 3.2637 5.9376 -0.8918 14 6 3.1881 5.3975 -2.2559 15 6 2.2265 6.2477 -3.0884 16 6 2.1472 5.6849 -4.5089 17 6 1.2005 6.5228 -5.3291 18 1 0.7051 7.3720 -4.8821 19 6 0.9714 6.2088 -6.6520 20 7 0.1494 6.9432 -7.3693 21 14 1.8287 4.7403 -7.4254 22 1 0.9889 3.5282 -7.2503 23 1 2.0354 4.9943 -8.8739 24 1 3.1432 4.5312 -6.7670 25 6 1.9213 3.6047 0.0051 26 6 1.2916 2.3751 -0.0002 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 4.0209 0.3797 0.0017 31 1 5.1346 2.5749 0.0000 32 1 2.9661 5.6540 1.7888 33 1 4.5724 4.9405 2.0723 34 1 2.8669 7.9459 0.8869 35 1 4.4066 8.7790 0.5626 36 1 4.9137 7.1903 -1.2490 37 1 3.3231 7.9391 -1.5320 38 1 2.8266 4.3699 -2.2202 39 1 4.1785 5.4188 -2.7104 40 1 2.5879 7.2755 -3.1240 41 1 1.2360 6.2266 -2.6338 42 1 1.7855 4.6573 -4.4729 43 1 3.1375 5.7058 -4.9637 44 1 -0.0120 6.7221 -8.2999 45 1 1.3344 4.5114 0.0094 46 1 0.2130 2.3201 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879736761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:13 Heat of formation + Delta-G solvation = -56.442432 kcal Electronic energy + Delta-G solvation = -25474.848407 eV Core-core repulsion = 21943.707300 eV Total energy + Delta-G solvation = -3531.141107 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54642 -39.57031 -37.54217 -36.12380 -33.68136 -32.37617 -31.43569 -31.11737 -29.24621 -28.17470 -27.23262 -25.58342 -24.08043 -22.85758 -22.21762 -21.53452 -20.01280 -19.88631 -18.25271 -16.83799 -16.49871 -16.42848 -16.24631 -15.84316 -15.47452 -15.03910 -14.77834 -14.59825 -14.30048 -14.01228 -13.65629 -13.60040 -13.56219 -13.03837 -12.83610 -12.61021 -12.28593 -12.10325 -11.96034 -11.62705 -11.45692 -11.35860 -11.12304 -10.94563 -10.85938 -10.64319 -10.58802 -9.94512 -9.83085 -9.67662 -9.49706 -9.16297 -9.02665 -8.53169 -8.25392 -8.13831 -6.03913 -4.01430 1.27929 1.35770 3.14506 3.30616 3.37964 3.42180 3.63081 3.77347 3.90194 4.45675 4.69319 4.73464 4.81702 4.87342 4.96599 5.00519 5.06175 5.11946 5.21440 5.27287 5.28696 5.30656 5.34388 5.39906 5.54696 5.58964 5.66015 5.72577 5.80475 5.88556 5.94836 6.02619 6.17313 6.17728 6.33373 6.48645 6.52806 6.62534 6.67552 6.90221 7.02236 7.17549 7.18302 7.28734 7.34372 7.46382 7.80787 8.55176 9.01460 9.59127 11.09647 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009141 B = 0.004853 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.534885 B = 5767.705230 C = 8126.865866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.125 3.875 4 C -0.155 4.155 5 C -0.075 4.075 6 C -0.116 4.116 7 C 0.093 3.907 8 H 0.054 0.946 9 C 0.075 3.925 10 O -0.387 6.387 11 C 0.063 3.937 12 C 0.016 3.984 13 N -0.529 5.529 14 C 0.052 3.948 15 C -0.095 4.095 16 C -0.012 4.012 17 C -0.517 4.517 18 H 0.071 0.929 19 C 0.066 3.934 20 N -0.905 5.905 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.266 1.266 25 C -0.045 4.045 26 C -0.209 4.209 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.028 0.972 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.010 0.990 43 H 0.012 0.988 44 H 0.262 0.738 45 H 0.136 0.864 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 -8.879 19.829 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.174 4.174 5 C -0.093 4.093 6 C -0.117 4.117 7 C -0.016 4.016 8 H 0.072 0.928 9 C -0.002 4.002 10 O -0.306 6.306 11 C -0.014 4.014 12 C -0.112 4.112 13 N -0.254 5.254 14 C -0.075 4.075 15 C -0.133 4.133 16 C -0.050 4.050 17 C -0.555 4.555 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.544 5.544 21 Si 0.706 3.294 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.191 1.191 25 C -0.064 4.064 26 C -0.227 4.227 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.059 0.941 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.028 0.972 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.154 0.846 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.707 -8.942 19.937 22.583 hybrid contribution 0.651 -0.826 -1.239 1.625 sum 6.358 -9.768 18.698 22.033 Atomic orbital electron populations 1.23060 0.78326 1.03815 1.01626 1.86039 1.21469 1.27139 1.88763 1.19068 0.92378 0.84150 0.96369 1.20309 0.91343 0.98381 1.07345 1.20804 0.99612 0.91014 0.97911 1.19484 0.93904 0.93547 1.04778 1.21112 0.95585 0.90064 0.94821 0.92821 1.22669 0.99057 0.83839 0.94603 1.87963 1.55534 1.21050 1.66040 1.22711 0.97675 0.92298 0.88711 1.22845 0.98418 0.91937 0.98033 1.62303 1.50874 1.01840 1.10362 1.22379 0.99001 0.99924 0.86185 1.21453 0.98005 0.98024 0.95813 1.19539 0.96904 0.96318 0.92279 1.21132 1.25336 1.13811 0.95241 0.91047 1.25025 0.94845 0.96394 0.97207 1.69915 1.36461 1.39458 1.08547 0.86799 0.80840 0.83418 0.78355 1.20318 1.21395 1.19089 1.20900 0.93967 0.97282 0.94227 1.21299 1.00177 0.92307 1.08946 0.88377 0.92665 0.92328 0.85393 0.85595 0.92195 0.88713 0.92202 0.88563 0.94115 0.88537 0.90650 0.95358 0.92909 0.92097 0.97169 0.96932 0.92785 0.84649 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.79 10.50 -19.40 -0.20 -3.99 16 3 C 0.13 1.56 6.69 -39.22 -0.26 1.30 16 4 C -0.16 -1.82 9.99 -39.43 -0.39 -2.21 16 5 C -0.07 -0.85 9.66 -39.60 -0.38 -1.23 16 6 C -0.12 -1.43 3.62 -104.60 -0.38 -1.81 16 7 C 0.09 1.15 2.18 -68.75 -0.15 1.00 16 8 H 0.05 0.69 8.00 -51.93 -0.42 0.27 16 9 C 0.08 0.85 6.27 37.21 0.23 1.08 16 10 O -0.39 -4.84 10.83 -35.23 -0.38 -5.22 16 11 C 0.06 0.71 7.01 37.21 0.26 0.97 16 12 C 0.02 0.20 5.44 -3.71 -0.02 0.18 16 13 N -0.53 -7.41 3.87 -227.73 -0.88 -8.29 16 14 C 0.05 0.86 4.61 -3.83 -0.02 0.84 16 15 C -0.10 -1.88 5.09 -26.74 -0.14 -2.01 16 16 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 17 C -0.52 -14.86 9.66 -34.44 -0.33 -15.20 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 21 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.27 -6.46 6.54 56.52 0.37 -6.10 16 25 C -0.05 -0.58 8.34 -39.61 -0.33 -0.91 16 26 C -0.21 -2.54 9.04 -39.43 -0.36 -2.89 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 29 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 30 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.13 1.18 8.03 -52.49 -0.42 0.76 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.30 6.38 -51.93 -0.33 0.97 16 38 H 0.08 1.29 6.09 -51.93 -0.32 0.98 16 39 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 40 H 0.05 1.03 6.52 -51.93 -0.34 0.70 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.01 0.24 7.58 -51.93 -0.39 -0.15 16 43 H 0.01 0.30 7.19 -51.93 -0.37 -0.07 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 45 H 0.14 1.76 7.72 -52.48 -0.41 1.35 16 46 H 0.13 1.34 6.30 -52.48 -0.33 1.01 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -32.15 362.89 -8.89 -41.04 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.51 Total: -0.82 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -1.49 Total: -18.23 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.11 Total: -35.64 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.59 Total: -9.22 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.15 -8.89 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879736761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.407 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds