Wall clock time and date at job start Tue Mar 31 2020 10:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 117.00455 * 2 1 4 4 C 1.38731 * 120.06188 * 179.97438 * 3 2 1 5 5 C 1.38143 * 119.94877 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05182 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94185 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.54232 * 19.88452 * 7 6 5 9 9 C 1.53105 * 109.50866 * 259.78339 * 7 6 5 10 10 O 1.43014 * 109.25924 * 183.21632 * 9 7 6 11 11 C 1.43014 * 113.73728 * 58.66686 * 10 9 7 12 12 C 1.53100 * 109.26272 * 301.32967 * 11 10 9 13 13 N 1.47011 * 109.50802 * 139.99608 * 7 6 5 14 14 C 1.46902 * 111.00078 * 302.32716 * 13 7 6 15 15 C 1.52994 * 109.46988 * 169.99451 * 14 13 7 16 16 C 1.52996 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.38255 * 120.11434 * 0.26873 * 6 5 4 26 26 C 1.38149 * 120.05476 * 359.45402 * 25 6 5 27 27 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47235 * 300.00298 * 1 2 3 29 29 H 1.09002 * 109.46765 * 60.00565 * 1 2 3 30 30 H 1.08006 * 120.02045 * 359.95560 * 4 3 2 31 31 H 1.08000 * 119.97257 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.49729 * 303.15078 * 9 7 6 33 33 H 1.08994 * 109.50426 * 63.23566 * 9 7 6 34 34 H 1.09003 * 109.51046 * 61.26548 * 11 10 9 35 35 H 1.09003 * 109.50410 * 181.34962 * 11 10 9 36 36 H 1.08999 * 109.50319 * 296.91723 * 12 11 10 37 37 H 1.08994 * 109.50837 * 176.78609 * 12 11 10 38 38 H 1.08998 * 109.46869 * 50.00278 * 14 13 7 39 39 H 1.08994 * 109.47040 * 289.99981 * 14 13 7 40 40 H 1.09004 * 109.46806 * 60.00264 * 15 14 13 41 41 H 1.09000 * 109.47828 * 300.00569 * 15 14 13 42 42 H 1.09004 * 109.47066 * 60.00422 * 16 15 14 43 43 H 1.08994 * 109.47405 * 300.00252 * 16 15 14 44 44 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 45 45 H 1.08005 * 119.97414 * 179.70720 * 25 6 5 46 46 H 1.08004 * 120.02836 * 180.27411 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0184 -0.0005 8 1 5.0126 4.9046 -0.3495 9 6 3.9897 5.5905 1.4196 10 8 4.5725 6.8963 1.4007 11 6 3.8934 7.8175 0.5432 12 6 3.8889 7.2681 -0.8858 13 7 3.2637 5.9376 -0.8918 14 6 3.1881 5.3975 -2.2559 15 6 2.2265 6.2477 -3.0884 16 6 2.1472 5.6849 -4.5089 17 6 1.2005 6.5228 -5.3291 18 1 0.7051 7.3720 -4.8821 19 6 0.9714 6.2088 -6.6520 20 7 0.1494 6.9432 -7.3693 21 14 1.8287 4.7403 -7.4254 22 1 0.9889 3.5282 -7.2503 23 1 2.0354 4.9943 -8.8739 24 1 3.1432 4.5312 -6.7670 25 6 1.9213 3.6047 0.0051 26 6 1.2916 2.3751 -0.0002 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 4.0209 0.3797 0.0017 31 1 5.1346 2.5749 0.0000 32 1 2.9661 5.6540 1.7888 33 1 4.5724 4.9405 2.0723 34 1 2.8669 7.9459 0.8869 35 1 4.4066 8.7790 0.5626 36 1 4.9137 7.1903 -1.2490 37 1 3.3231 7.9391 -1.5320 38 1 2.8266 4.3699 -2.2202 39 1 4.1785 5.4188 -2.7104 40 1 2.5879 7.2755 -3.1240 41 1 1.2360 6.2266 -2.6338 42 1 1.7855 4.6573 -4.4729 43 1 3.1375 5.7058 -4.9637 44 1 -0.0120 6.7221 -8.2999 45 1 1.3344 4.5114 0.0094 46 1 0.2130 2.3201 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879736761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:12 Heat of formation + Delta-G solvation = -76.615888 kcal Electronic energy + Delta-G solvation = -25475.723194 eV Core-core repulsion = 21943.707300 eV Total energy + Delta-G solvation = -3532.015894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47923 -40.49374 -38.41736 -37.35551 -35.48312 -33.78670 -32.93898 -32.01005 -30.25048 -29.52352 -28.02521 -27.07922 -25.03371 -23.87209 -23.74509 -22.48173 -21.67028 -20.93104 -19.10331 -18.91536 -17.59645 -17.35009 -17.22886 -16.62589 -16.40936 -16.30572 -16.19892 -15.84747 -15.51005 -15.18717 -14.93068 -14.74567 -14.52184 -14.47573 -14.01272 -13.79752 -13.74879 -13.34304 -13.03856 -12.81862 -12.75659 -12.58738 -12.35251 -12.22529 -11.94388 -11.81003 -11.74182 -11.65072 -11.47691 -11.36209 -11.23058 -10.77797 -10.65319 -9.92723 -9.37625 -9.04289 -8.30896 -6.34466 0.38450 0.43994 1.33186 1.34596 1.46627 2.34008 2.38267 2.65550 2.84540 2.91578 3.04442 3.74261 3.85481 3.91045 3.96828 4.08283 4.13671 4.16753 4.25004 4.32016 4.37730 4.41095 4.45769 4.49220 4.54986 4.62887 4.68104 4.71994 4.73965 4.79180 4.82995 4.90958 4.96815 5.00187 5.12967 5.13303 5.28104 5.42258 5.47546 5.57678 5.62766 5.65459 5.80435 5.99468 6.05182 6.18449 6.28507 6.44125 6.73349 7.30081 8.86002 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009141 B = 0.004853 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.534885 B = 5767.705230 C = 8126.865866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.114 3.886 4 C -0.162 4.162 5 C -0.073 4.073 6 C -0.123 4.123 7 C 0.097 3.903 8 H 0.054 0.946 9 C 0.078 3.922 10 O -0.397 6.397 11 C 0.067 3.933 12 C 0.014 3.986 13 N -0.532 5.532 14 C 0.068 3.932 15 C -0.084 4.084 16 C -0.008 4.008 17 C -0.529 4.529 18 H 0.032 0.968 19 C 0.006 3.994 20 N -0.951 5.951 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.249 1.249 25 C -0.056 4.056 26 C -0.216 4.216 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.039 0.961 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.014 0.986 43 H 0.015 0.985 44 H 0.266 0.734 45 H 0.127 0.873 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.570 -10.576 20.835 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.069 3.931 4 C -0.180 4.180 5 C -0.091 4.091 6 C -0.124 4.124 7 C -0.011 4.011 8 H 0.072 0.928 9 C 0.001 3.999 10 O -0.316 6.316 11 C -0.010 4.010 12 C -0.114 4.114 13 N -0.257 5.257 14 C -0.059 4.059 15 C -0.122 4.122 16 C -0.046 4.046 17 C -0.567 4.567 18 H 0.051 0.949 19 C -0.191 4.191 20 N -0.592 5.592 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.173 1.173 25 C -0.075 4.075 26 C -0.235 4.235 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.032 0.968 43 H 0.034 0.966 44 H 0.075 0.925 45 H 0.145 0.855 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.262 -10.637 20.970 24.610 hybrid contribution 0.080 -0.245 -1.509 1.531 sum 7.342 -10.882 19.461 23.475 Atomic orbital electron populations 1.23301 0.76749 1.05465 1.01993 1.86022 1.23184 1.26937 1.88695 1.19280 0.92923 0.84424 0.96452 1.20582 0.91378 0.99153 1.06934 1.21031 1.00664 0.90455 0.96986 1.19527 0.93788 0.93824 1.05280 1.21131 0.95191 0.89816 0.94957 0.92791 1.22747 0.99479 0.83659 0.94052 1.87956 1.55933 1.21567 1.66102 1.22764 0.98162 0.92828 0.87249 1.22886 0.97948 0.91276 0.99248 1.62232 1.51879 1.02593 1.09017 1.22046 0.97720 0.98924 0.87235 1.21252 0.98554 0.98356 0.94048 1.19468 0.95512 0.95697 0.93965 1.21465 1.25874 1.13324 0.96039 0.94925 1.25982 0.95604 0.99683 0.97825 1.70064 1.38287 1.41672 1.09142 0.85701 0.80326 0.79395 0.77498 1.19220 1.20772 1.17286 1.20899 0.94329 0.97196 0.95050 1.21439 1.00880 0.92192 1.09000 0.86177 0.91599 0.92638 0.84003 0.83498 0.92218 0.86805 0.92012 0.86530 0.94271 0.89454 0.90955 0.95433 0.93157 0.93092 0.96778 0.96625 0.92491 0.85504 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -7.45 10.50 -92.34 -0.97 -8.42 16 3 C 0.11 2.70 6.69 22.51 0.15 2.85 16 4 C -0.16 -3.49 9.99 22.37 0.22 -3.27 16 5 C -0.07 -1.50 9.66 22.25 0.22 -1.28 16 6 C -0.12 -2.83 3.62 -19.85 -0.07 -2.91 16 7 C 0.10 2.24 2.18 44.18 0.10 2.33 16 8 H 0.05 1.26 8.00 -2.39 -0.02 1.24 16 9 C 0.08 1.58 6.27 72.02 0.45 2.03 16 10 O -0.40 -9.07 10.83 -148.98 -1.61 -10.69 16 11 C 0.07 1.39 7.01 72.02 0.50 1.89 16 12 C 0.01 0.36 5.44 86.31 0.47 0.83 16 13 N -0.53 -14.33 3.87 -874.40 -3.38 -17.71 16 14 C 0.07 2.19 4.61 86.30 0.40 2.59 16 15 C -0.08 -3.32 5.09 30.59 0.16 -3.17 16 16 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 17 C -0.53 -31.02 9.66 25.60 0.25 -30.78 16 18 H 0.03 2.10 7.99 -2.91 -0.02 2.07 16 19 C 0.01 0.34 5.47 84.66 0.46 0.81 16 20 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 21 Si 0.95 45.04 27.47 68.60 1.88 46.93 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 25 C -0.06 -1.38 8.34 22.25 0.19 -1.20 16 26 C -0.22 -5.07 9.04 22.37 0.20 -4.87 16 27 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 0.84 7.66 -2.39 -0.02 0.83 16 29 H 0.05 0.87 7.66 -2.39 -0.02 0.85 16 30 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.15 2.32 8.03 -2.91 -0.02 2.30 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.88 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 2.32 6.38 -2.39 -0.02 2.31 16 38 H 0.07 2.39 6.09 -2.39 -0.01 2.37 16 39 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 40 H 0.05 1.99 6.52 -2.38 -0.02 1.97 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.01 0.66 7.58 -2.38 -0.02 0.64 16 43 H 0.02 0.73 7.19 -2.39 -0.02 0.71 16 44 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 45 H 0.13 3.27 7.72 -2.91 -0.02 3.25 16 46 H 0.14 2.79 6.30 -2.91 -0.02 2.78 16 Total: -1.00 -69.08 362.89 2.04 -67.04 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.89 Total: 15.88 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 4.92 Total: -33.02 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -3.08 Total: -77.73 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -2.58 Total: -19.10 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -69.08 2.04 -67.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879736761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.572 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds