Wall clock time and date at job start Tue Mar 31 2020 10:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99694 * 2 1 4 4 C 1.38735 * 120.05254 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94607 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05233 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.94156 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.50334 * 159.91670 * 7 6 5 9 9 C 1.53093 * 109.50498 * 279.99899 * 7 6 5 10 10 O 1.43020 * 109.25816 * 176.78407 * 9 7 6 11 11 C 1.43010 * 113.73422 * 301.32997 * 10 9 7 12 12 C 1.53100 * 109.26181 * 58.67406 * 11 10 9 13 13 N 1.47013 * 109.50350 * 39.78300 * 7 6 5 14 14 C 1.46898 * 111.00144 * 57.67579 * 13 7 6 15 15 C 1.53003 * 109.46915 * 169.99698 * 14 13 7 16 16 C 1.52997 * 109.46807 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47047 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00009 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99937 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00171 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47165 * 89.99868 * 21 19 17 23 23 H 1.48503 * 109.47044 * 209.99510 * 21 19 17 24 24 H 1.48495 * 109.46913 * 329.99832 * 21 19 17 25 25 C 1.38269 * 120.11595 * 359.95530 * 6 5 4 26 26 C 1.38142 * 120.04935 * 0.04230 * 25 6 5 27 27 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47292 * 300.00273 * 1 2 3 29 29 H 1.08998 * 109.47042 * 60.00021 * 1 2 3 30 30 H 1.08002 * 120.02704 * 359.70561 * 4 3 2 31 31 H 1.08001 * 119.97447 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.50969 * 296.72286 * 9 7 6 33 33 H 1.09006 * 109.50951 * 56.84680 * 9 7 6 34 34 H 1.09007 * 109.50482 * 178.60210 * 11 10 9 35 35 H 1.09000 * 109.50959 * 298.68643 * 11 10 9 36 36 H 1.09000 * 109.50987 * 63.07777 * 12 11 10 37 37 H 1.08998 * 109.50726 * 183.21770 * 12 11 10 38 38 H 1.09003 * 109.46634 * 289.99406 * 14 13 7 39 39 H 1.08994 * 109.47231 * 49.99784 * 14 13 7 40 40 H 1.08993 * 109.47009 * 299.99893 * 15 14 13 41 41 H 1.09001 * 109.47401 * 59.99793 * 15 14 13 42 42 H 1.09003 * 109.47388 * 299.99677 * 16 15 14 43 43 H 1.08997 * 109.47564 * 60.00437 * 16 15 14 44 44 H 0.97002 * 120.00009 * 180.02562 * 20 19 17 45 45 H 1.07992 * 119.97577 * 180.02562 * 25 6 5 46 46 H 1.08005 * 120.02748 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0186 -0.0005 8 1 3.2917 5.7808 -0.3538 9 6 4.4409 5.3605 1.4207 10 8 5.1549 6.5996 1.4022 11 6 6.3030 6.5897 0.5496 12 6 5.8671 6.2602 -0.8806 13 7 5.1582 4.9722 -0.8868 14 6 4.7714 4.5908 -2.2516 15 6 5.9597 4.7934 -3.1939 16 6 5.5571 4.3955 -4.6153 17 6 6.7273 4.5957 -5.5435 18 1 7.6646 4.9689 -5.1580 19 6 6.6017 4.3013 -6.8846 20 7 7.6228 4.4765 -7.6947 21 14 4.9808 3.6551 -7.5512 22 1 4.1303 4.7958 -7.9763 23 1 5.2416 2.7712 -8.7157 24 1 4.2818 2.8846 -6.4915 25 6 1.9210 3.6048 -0.0015 26 6 1.2916 2.3751 -0.0010 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.0208 0.3799 0.0058 31 1 5.1345 2.5750 0.0008 32 1 3.5698 5.4520 2.0696 33 1 5.0924 4.5705 1.7945 34 1 6.7787 7.5703 0.5682 35 1 7.0090 5.8360 0.8984 36 1 5.2033 7.0427 -1.2483 37 1 6.7453 6.1953 -1.5229 38 1 4.4718 3.5428 -2.2648 39 1 3.9376 5.2113 -2.5798 40 1 6.2593 5.8413 -3.1806 41 1 6.7936 4.1729 -2.8657 42 1 5.2577 3.3475 -4.6283 43 1 4.7231 5.0157 -4.9438 44 1 7.5343 4.2697 -8.6383 45 1 1.3342 4.5114 -0.0023 46 1 0.2129 2.3201 -0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879736762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:17 Heat of formation + Delta-G solvation = -54.179749 kcal Electronic energy + Delta-G solvation = -25367.257636 eV Core-core repulsion = 21836.214646 eV Total energy + Delta-G solvation = -3531.042990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.56541 -39.60799 -37.55977 -36.19760 -33.67061 -32.41677 -31.34411 -31.17848 -29.17890 -28.23666 -27.30003 -25.63761 -24.09711 -22.79710 -22.25525 -21.68946 -20.07752 -19.69117 -18.30759 -16.86450 -16.51684 -16.35086 -16.17529 -15.90443 -15.55758 -15.10749 -14.87354 -14.62183 -14.30378 -13.94838 -13.68206 -13.58434 -13.44797 -13.19742 -12.86065 -12.61745 -12.31903 -12.13132 -11.80296 -11.72643 -11.53295 -11.40158 -11.16477 -10.92207 -10.86319 -10.58819 -10.56821 -9.97027 -9.78864 -9.68224 -9.53728 -9.14897 -9.04528 -8.52909 -8.23176 -8.18317 -6.03636 -4.01349 1.28065 1.29196 3.10096 3.30841 3.38397 3.42976 3.60815 3.78661 3.91501 4.46094 4.62374 4.71217 4.77630 4.86546 4.89676 4.90595 5.04938 5.13181 5.19943 5.21530 5.29792 5.31627 5.32838 5.39445 5.59929 5.62009 5.67297 5.70205 5.77374 5.91376 5.94498 5.99259 6.14750 6.16776 6.23016 6.46836 6.54350 6.61661 6.68303 6.86339 7.03921 7.17730 7.19233 7.25443 7.31994 7.44666 7.80699 8.54925 9.01359 9.59313 11.09897 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.004519 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.530132 B = 6194.857655 C = 8606.884427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.153 4.153 5 C -0.048 4.048 6 C -0.114 4.114 7 C 0.093 3.907 8 H 0.054 0.946 9 C 0.076 3.924 10 O -0.388 6.388 11 C 0.062 3.938 12 C 0.013 3.987 13 N -0.529 5.529 14 C 0.054 3.946 15 C -0.104 4.104 16 C -0.012 4.012 17 C -0.518 4.518 18 H 0.071 0.929 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.074 4.074 26 C -0.211 4.211 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.028 0.972 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.016 0.984 43 H 0.008 0.992 44 H 0.263 0.737 45 H 0.122 0.878 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 -2.986 20.712 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.172 4.172 5 C -0.066 4.066 6 C -0.115 4.115 7 C -0.016 4.016 8 H 0.072 0.928 9 C -0.002 4.002 10 O -0.306 6.306 11 C -0.015 4.015 12 C -0.115 4.115 13 N -0.254 5.254 14 C -0.073 4.073 15 C -0.141 4.141 16 C -0.050 4.050 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.190 1.190 25 C -0.092 4.092 26 C -0.229 4.229 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.034 0.966 43 H 0.026 0.974 44 H 0.072 0.928 45 H 0.140 0.860 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.530 -3.388 20.814 24.530 hybrid contribution -1.656 0.168 -1.197 2.050 sum -14.187 -3.220 19.618 24.423 Atomic orbital electron populations 1.23033 0.78583 1.03805 1.01301 1.86072 1.21248 1.27138 1.88773 1.19078 0.92460 0.84017 0.96470 1.20498 0.91231 0.98898 1.06564 1.20936 1.00786 0.90242 0.94673 1.19512 0.92980 0.94502 1.04513 1.21135 0.91841 0.93697 0.94925 0.92818 1.22661 0.96381 0.86589 0.94523 1.87964 1.41685 1.34563 1.66401 1.22738 0.87713 1.02165 0.88837 1.22911 1.00402 0.90282 0.97928 1.62342 1.23151 1.29452 1.10454 1.22353 0.98116 1.00764 0.86026 1.21611 0.96211 1.00988 0.95322 1.19533 0.97133 0.96134 0.92198 1.21130 0.98370 1.43849 0.92282 0.91040 1.25022 0.96330 0.95081 0.97022 1.69918 1.30587 1.49353 1.04492 0.86795 0.84594 0.79346 0.78672 1.20385 1.21365 1.19006 1.20782 0.93801 0.97048 0.97597 1.21117 0.99794 0.92246 1.09784 0.88363 0.92771 0.92644 0.85158 0.84222 0.88804 0.92147 0.88546 0.92222 0.94025 0.88052 0.90630 0.95380 0.92636 0.91893 0.96603 0.97374 0.92772 0.86024 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.64 10.50 -19.42 -0.20 -3.85 16 3 C 0.12 1.51 6.69 -39.22 -0.26 1.25 16 4 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 5 C -0.05 -0.60 8.13 -39.61 -0.32 -0.92 16 6 C -0.11 -1.39 3.95 -104.60 -0.41 -1.80 16 7 C 0.09 1.15 2.15 -68.75 -0.15 1.01 16 8 H 0.05 0.70 8.00 -51.93 -0.42 0.29 16 9 C 0.08 0.85 6.27 37.21 0.23 1.08 16 10 O -0.39 -4.91 10.83 -35.23 -0.38 -5.29 16 11 C 0.06 0.72 7.01 37.21 0.26 0.98 16 12 C 0.01 0.17 4.94 -3.71 -0.02 0.15 16 13 N -0.53 -7.44 4.00 -227.72 -0.91 -8.35 16 14 C 0.05 0.90 4.64 -3.82 -0.02 0.88 16 15 C -0.10 -2.03 4.42 -26.73 -0.12 -2.15 16 16 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 17 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 21 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 25 C -0.07 -0.82 9.66 -39.61 -0.38 -1.20 16 26 C -0.21 -2.29 9.04 -39.44 -0.36 -2.65 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.14 1.74 7.71 -52.49 -0.40 1.34 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.41 6.05 -51.93 -0.31 1.10 16 38 H 0.08 1.30 6.56 -51.93 -0.34 0.96 16 39 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 40 H 0.06 1.07 6.28 -51.93 -0.33 0.75 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 43 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.12 1.14 8.03 -52.49 -0.42 0.72 16 46 H 0.13 1.07 6.30 -52.48 -0.33 0.74 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -32.22 361.81 -8.93 -41.15 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.50 Total: -0.91 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -1.49 Total: -18.24 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.14 Total: -35.73 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.59 Total: -9.14 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.22 -8.93 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879736762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.028 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds