Wall clock time and date at job start Tue Mar 31 2020 10:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99694 * 2 1 4 4 C 1.38735 * 120.05254 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94607 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05233 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.94156 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.50334 * 159.91670 * 7 6 5 9 9 C 1.53093 * 109.50498 * 279.99899 * 7 6 5 10 10 O 1.43020 * 109.25816 * 176.78407 * 9 7 6 11 11 C 1.43010 * 113.73422 * 301.32997 * 10 9 7 12 12 C 1.53100 * 109.26181 * 58.67406 * 11 10 9 13 13 N 1.47013 * 109.50350 * 39.78300 * 7 6 5 14 14 C 1.46898 * 111.00144 * 57.67579 * 13 7 6 15 15 C 1.53003 * 109.46915 * 169.99698 * 14 13 7 16 16 C 1.52997 * 109.46807 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47047 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00009 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99937 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00171 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47165 * 89.99868 * 21 19 17 23 23 H 1.48503 * 109.47044 * 209.99510 * 21 19 17 24 24 H 1.48495 * 109.46913 * 329.99832 * 21 19 17 25 25 C 1.38269 * 120.11595 * 359.95530 * 6 5 4 26 26 C 1.38142 * 120.04935 * 0.04230 * 25 6 5 27 27 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47292 * 300.00273 * 1 2 3 29 29 H 1.08998 * 109.47042 * 60.00021 * 1 2 3 30 30 H 1.08002 * 120.02704 * 359.70561 * 4 3 2 31 31 H 1.08001 * 119.97447 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.50969 * 296.72286 * 9 7 6 33 33 H 1.09006 * 109.50951 * 56.84680 * 9 7 6 34 34 H 1.09007 * 109.50482 * 178.60210 * 11 10 9 35 35 H 1.09000 * 109.50959 * 298.68643 * 11 10 9 36 36 H 1.09000 * 109.50987 * 63.07777 * 12 11 10 37 37 H 1.08998 * 109.50726 * 183.21770 * 12 11 10 38 38 H 1.09003 * 109.46634 * 289.99406 * 14 13 7 39 39 H 1.08994 * 109.47231 * 49.99784 * 14 13 7 40 40 H 1.08993 * 109.47009 * 299.99893 * 15 14 13 41 41 H 1.09001 * 109.47401 * 59.99793 * 15 14 13 42 42 H 1.09003 * 109.47388 * 299.99677 * 16 15 14 43 43 H 1.08997 * 109.47564 * 60.00437 * 16 15 14 44 44 H 0.97002 * 120.00009 * 180.02562 * 20 19 17 45 45 H 1.07992 * 119.97577 * 180.02562 * 25 6 5 46 46 H 1.08005 * 120.02748 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0186 -0.0005 8 1 3.2917 5.7808 -0.3538 9 6 4.4409 5.3605 1.4207 10 8 5.1549 6.5996 1.4022 11 6 6.3030 6.5897 0.5496 12 6 5.8671 6.2602 -0.8806 13 7 5.1582 4.9722 -0.8868 14 6 4.7714 4.5908 -2.2516 15 6 5.9597 4.7934 -3.1939 16 6 5.5571 4.3955 -4.6153 17 6 6.7273 4.5957 -5.5435 18 1 7.6646 4.9689 -5.1580 19 6 6.6017 4.3013 -6.8846 20 7 7.6228 4.4765 -7.6947 21 14 4.9808 3.6551 -7.5512 22 1 4.1303 4.7958 -7.9763 23 1 5.2416 2.7712 -8.7157 24 1 4.2818 2.8846 -6.4915 25 6 1.9210 3.6048 -0.0015 26 6 1.2916 2.3751 -0.0010 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.0208 0.3799 0.0058 31 1 5.1345 2.5750 0.0008 32 1 3.5698 5.4520 2.0696 33 1 5.0924 4.5705 1.7945 34 1 6.7787 7.5703 0.5682 35 1 7.0090 5.8360 0.8984 36 1 5.2033 7.0427 -1.2483 37 1 6.7453 6.1953 -1.5229 38 1 4.4718 3.5428 -2.2648 39 1 3.9376 5.2113 -2.5798 40 1 6.2593 5.8413 -3.1806 41 1 6.7936 4.1729 -2.8657 42 1 5.2577 3.3475 -4.6283 43 1 4.7231 5.0157 -4.9438 44 1 7.5343 4.2697 -8.6383 45 1 1.3342 4.5114 -0.0023 46 1 0.2129 2.3201 -0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879736762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:16 Heat of formation + Delta-G solvation = -74.639813 kcal Electronic energy + Delta-G solvation = -25368.144851 eV Core-core repulsion = 21836.214646 eV Total energy + Delta-G solvation = -3531.930205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48185 -40.51940 -38.41076 -37.43778 -35.45999 -33.82699 -32.86948 -32.03535 -30.17746 -29.52648 -28.06293 -27.12896 -25.06729 -23.89108 -23.62607 -22.73593 -21.55780 -20.84462 -19.10975 -18.91488 -17.64700 -17.21515 -17.17657 -16.61784 -16.49654 -16.34585 -16.29455 -15.88683 -15.48673 -15.20300 -14.92823 -14.67540 -14.52427 -14.32031 -14.17295 -13.83540 -13.67990 -13.36969 -13.06093 -12.86290 -12.69409 -12.61628 -12.37047 -12.11244 -11.94243 -11.85694 -11.72129 -11.63613 -11.46092 -11.44264 -11.17597 -10.77877 -10.65311 -9.92463 -9.37091 -9.05368 -8.30852 -6.34598 0.40180 0.41464 1.32883 1.35212 1.47236 2.34307 2.39291 2.65475 2.85027 2.91949 3.04505 3.73972 3.85325 3.89441 4.00238 4.06619 4.13056 4.15454 4.23322 4.32413 4.38294 4.39540 4.45122 4.48979 4.55429 4.60418 4.69051 4.72754 4.76705 4.78979 4.81811 4.91367 4.97643 5.01915 5.10423 5.12628 5.29037 5.37017 5.46280 5.56269 5.61963 5.65484 5.82442 5.97582 6.05206 6.18523 6.28058 6.45937 6.73204 7.30083 8.86011 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.004519 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.530132 B = 6194.857655 C = 8606.884427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.115 3.885 4 C -0.169 4.169 5 C -0.056 4.056 6 C -0.123 4.123 7 C 0.097 3.903 8 H 0.052 0.948 9 C 0.077 3.923 10 O -0.398 6.398 11 C 0.066 3.934 12 C 0.012 3.988 13 N -0.530 5.530 14 C 0.070 3.930 15 C -0.093 4.093 16 C -0.009 4.009 17 C -0.531 4.531 18 H 0.033 0.967 19 C 0.006 3.994 20 N -0.951 5.951 21 Si 0.948 3.052 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.250 1.250 25 C -0.075 4.075 26 C -0.209 4.209 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.266 0.734 45 H 0.141 0.859 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.688 -3.201 21.880 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.070 3.930 4 C -0.188 4.188 5 C -0.074 4.074 6 C -0.124 4.124 7 C -0.011 4.011 8 H 0.070 0.930 9 C 0.000 4.000 10 O -0.316 6.316 11 C -0.010 4.010 12 C -0.116 4.116 13 N -0.255 5.255 14 C -0.057 4.057 15 C -0.130 4.130 16 C -0.046 4.046 17 C -0.569 4.569 18 H 0.052 0.948 19 C -0.191 4.191 20 N -0.592 5.592 21 Si 0.771 3.229 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.174 1.174 25 C -0.093 4.093 26 C -0.228 4.228 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.075 0.925 45 H 0.159 0.841 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.289 -3.600 22.009 27.039 hybrid contribution -0.751 0.227 -1.523 1.713 sum -16.040 -3.373 20.486 26.237 Atomic orbital electron populations 1.23328 0.76530 1.05480 1.02235 1.86050 1.23451 1.27010 1.88676 1.19242 0.92542 0.84805 0.96389 1.20622 0.91933 0.98986 1.07257 1.20898 1.00545 0.90622 0.95329 1.19533 0.93572 0.94008 1.05285 1.21154 0.91004 0.93917 0.95051 0.93042 1.22753 0.97039 0.86187 0.93976 1.87956 1.42005 1.35264 1.66417 1.22779 0.87551 1.03396 0.87301 1.22930 0.99753 0.89723 0.99214 1.62306 1.24131 1.29975 1.09108 1.22037 0.96233 1.00592 0.86853 1.21419 0.97267 1.00611 0.93742 1.19467 0.95307 0.96204 0.93668 1.21476 0.98601 1.43340 0.93440 0.94831 1.25987 1.00404 0.95371 0.97361 1.70066 1.33184 1.50851 1.05053 0.85690 0.79710 0.79174 0.78293 1.19102 1.20798 1.17352 1.21030 0.93489 0.98013 0.96799 1.21387 1.01025 0.91613 1.08740 0.86505 0.91346 0.92084 0.85048 0.84937 0.86865 0.92005 0.86688 0.91786 0.94580 0.89134 0.90993 0.95516 0.92699 0.92797 0.96554 0.96773 0.92482 0.84091 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.21 10.50 -92.40 -0.97 -8.18 16 3 C 0.12 2.62 6.69 22.51 0.15 2.77 16 4 C -0.17 -4.08 9.99 22.37 0.22 -3.86 16 5 C -0.06 -1.35 8.13 22.25 0.18 -1.17 16 6 C -0.12 -2.80 3.95 -19.85 -0.08 -2.87 16 7 C 0.10 2.26 2.15 44.18 0.09 2.35 16 8 H 0.05 1.24 8.00 -2.39 -0.02 1.22 16 9 C 0.08 1.59 6.27 72.01 0.45 2.04 16 10 O -0.40 -9.29 10.83 -148.98 -1.61 -10.90 16 11 C 0.07 1.43 7.01 72.02 0.50 1.93 16 12 C 0.01 0.30 4.94 86.31 0.43 0.73 16 13 N -0.53 -14.43 4.00 -874.37 -3.50 -17.92 16 14 C 0.07 2.27 4.64 86.30 0.40 2.67 16 15 C -0.09 -3.65 4.42 30.59 0.14 -3.51 16 16 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 17 C -0.53 -31.17 9.66 25.60 0.25 -30.92 16 18 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 19 C 0.01 0.33 5.47 84.65 0.46 0.79 16 20 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 21 Si 0.95 45.14 27.47 68.60 1.88 47.03 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 25 C -0.07 -1.49 9.66 22.25 0.22 -1.27 16 26 C -0.21 -4.03 9.04 22.36 0.20 -3.83 16 27 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 30 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.13 3.30 7.71 -2.91 -0.02 3.28 16 32 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 2.52 6.05 -2.39 -0.01 2.51 16 38 H 0.07 2.40 6.56 -2.39 -0.02 2.38 16 39 H 0.03 0.87 8.08 -2.39 -0.02 0.85 16 40 H 0.05 2.15 6.28 -2.39 -0.02 2.13 16 41 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 42 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 43 H 0.01 0.65 7.57 -2.39 -0.02 0.64 16 44 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 45 H 0.14 2.20 8.03 -2.91 -0.02 2.17 16 46 H 0.15 2.06 6.30 -2.91 -0.02 2.04 16 Total: -1.00 -69.58 361.81 1.84 -67.74 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.89 Total: 15.47 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 4.85 Total: -33.08 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -3.20 Total: -78.07 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -2.58 Total: -19.08 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.03 kcal Total: -69.58 1.84 -67.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879736762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.903 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds