Wall clock time and date at job start Tue Mar 31 2020 10:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52993 * 109.47599 * 154.71944 * 6 4 3 8 8 N 1.46902 * 109.46825 * 34.71846 * 6 4 3 9 9 C 1.46904 * 111.00006 * 60.00405 * 8 6 4 10 10 C 1.52999 * 109.47016 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.46945 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.47070 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00087 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99854 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99703 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00321 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47232 * 90.00103 * 16 14 12 18 18 H 1.48499 * 109.47333 * 210.00042 * 16 14 12 19 19 H 1.48500 * 109.46940 * 329.99765 * 16 14 12 20 20 C 1.50701 * 109.46839 * 274.72131 * 6 4 3 21 21 C 1.38237 * 119.99942 * 119.72535 * 20 6 4 22 22 C 1.38235 * 120.00126 * 179.76259 * 21 20 6 23 23 C 1.38240 * 119.99652 * 0.50895 * 22 21 20 24 24 C 1.38237 * 119.99815 * 359.74220 * 23 22 21 25 25 C 1.38226 * 120.00175 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 27 27 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 29 29 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 30 30 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 31 31 H 1.09004 * 109.47177 * 59.99845 * 7 6 4 32 32 H 1.09003 * 109.47418 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47190 * 300.00198 * 7 6 4 34 34 H 1.00892 * 111.00227 * 296.04684 * 8 6 4 35 35 H 1.08997 * 109.46975 * 299.99753 * 9 8 6 36 36 H 1.08999 * 109.47066 * 59.99971 * 9 8 6 37 37 H 1.09001 * 109.47431 * 300.00616 * 10 9 8 38 38 H 1.09005 * 109.47308 * 60.00011 * 10 9 8 39 39 H 1.09005 * 109.47519 * 299.99788 * 11 10 9 40 40 H 1.08996 * 109.47813 * 60.00247 * 11 10 9 41 41 H 0.97007 * 119.99624 * 180.02562 * 15 14 12 42 42 H 1.08006 * 120.00195 * 359.97438 * 21 20 6 43 43 H 1.07999 * 120.00227 * 180.22957 * 22 21 20 44 44 H 1.07995 * 119.99965 * 179.72419 * 23 22 21 45 45 H 1.07998 * 119.99306 * 179.97438 * 24 23 22 46 46 H 1.08005 * 120.00227 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.3215 2.9072 0.6200 8 7 3.0567 3.8211 0.7997 9 6 2.9526 3.3483 2.1867 10 6 2.0475 4.2923 2.9807 11 6 1.9386 3.7995 4.4250 12 6 1.0465 4.7289 5.2070 13 1 0.6021 5.5856 4.7224 14 6 0.7978 4.4854 6.5411 15 7 0.0197 5.2969 7.2237 16 14 1.5671 3.0040 7.3796 17 1 2.8835 3.3866 7.9506 18 1 0.6739 2.5319 8.4678 19 1 1.7556 1.9159 6.3868 20 6 4.0031 3.4531 -1.4080 21 6 3.3128 4.5953 -1.7684 22 6 3.3923 5.0711 -3.0638 23 6 4.1538 4.3989 -4.0015 24 6 4.8399 3.2538 -3.6423 25 6 4.7642 2.7807 -2.3458 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 5.9626 2.2514 0.0308 32 1 5.7383 3.9144 0.6241 33 1 5.2619 2.5341 1.6425 34 1 2.1442 3.9089 0.3782 35 1 2.5293 2.3439 2.1973 36 1 3.9439 3.3296 2.6395 37 1 2.4711 5.2965 2.9700 38 1 1.0561 4.3114 2.5280 39 1 1.5146 2.7953 4.4354 40 1 2.9298 3.7800 4.8781 41 1 -0.1549 5.1258 8.1624 42 1 2.7140 5.1178 -1.0370 43 1 2.8560 5.9655 -3.3444 44 1 4.2124 4.7681 -5.0147 45 1 5.4345 2.7285 -4.3751 46 1 5.3000 1.8859 -2.0652 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887127661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:25 Heat of formation + Delta-G solvation = -87.356652 kcal Electronic energy + Delta-G solvation = -25525.266845 eV Core-core repulsion = 21992.785196 eV Total energy + Delta-G solvation = -3532.481648 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.23223 -40.19294 -38.22972 -37.78807 -35.86119 -34.14968 -32.65278 -32.21557 -31.67705 -30.10045 -28.32373 -26.20226 -24.64230 -23.77119 -23.10149 -23.00582 -21.88729 -20.89092 -18.99184 -18.85936 -18.29188 -17.93970 -17.55200 -16.52511 -16.45257 -16.09647 -15.79524 -15.32322 -15.10054 -15.01556 -14.85916 -14.62460 -14.25991 -13.92067 -13.80603 -13.68245 -13.54881 -13.32459 -13.11314 -13.05943 -12.95155 -12.78267 -12.62753 -12.42209 -12.20395 -11.92715 -11.83545 -11.72377 -11.62191 -11.51179 -11.40353 -11.28491 -10.75884 -9.86832 -9.78820 -9.64112 -8.28877 -6.32404 0.29678 0.49276 0.98122 1.35201 1.36411 1.48236 1.52139 2.35807 2.83108 2.85631 3.06484 3.46327 3.52536 3.82446 3.90137 3.97532 4.09016 4.13535 4.17602 4.22013 4.24979 4.32574 4.54178 4.58154 4.61761 4.67776 4.71791 4.72828 4.83702 4.86210 4.92048 5.00921 5.04135 5.07874 5.14028 5.16120 5.34129 5.43012 5.53469 5.57336 5.60287 5.63186 5.66243 5.81854 6.08055 6.17326 6.30500 6.53006 6.75675 7.32035 8.87966 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.003642 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.366891 B = 7686.467468 C = 8394.300780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.441 3.559 5 O -0.529 6.529 6 C 0.175 3.825 7 C -0.128 4.128 8 N -0.654 5.654 9 C 0.062 3.938 10 C -0.085 4.085 11 C -0.010 4.010 12 C -0.529 4.529 13 H 0.034 0.966 14 C 0.004 3.996 15 N -0.951 5.951 16 Si 0.948 3.052 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.250 1.250 20 C -0.094 4.094 21 C -0.101 4.101 22 C -0.124 4.124 23 C -0.115 4.115 24 C -0.124 4.124 25 C -0.123 4.123 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.356 0.644 35 H 0.022 0.978 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.014 0.986 40 H 0.018 0.982 41 H 0.266 0.734 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.334 -8.048 -24.527 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.283 3.717 5 O -0.417 6.417 6 C 0.081 3.919 7 C -0.186 4.186 8 N -0.287 5.287 9 C -0.067 4.067 10 C -0.123 4.123 11 C -0.048 4.048 12 C -0.567 4.567 13 H 0.053 0.947 14 C -0.192 4.192 15 N -0.592 5.592 16 Si 0.772 3.228 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.174 1.174 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.142 4.142 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.142 4.142 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.177 0.823 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.155 0.845 43 H 0.163 0.837 44 H 0.167 0.833 45 H 0.162 0.838 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.933 -7.895 -24.219 26.994 hybrid contribution -0.596 -1.389 0.943 1.782 sum 8.337 -9.284 -23.275 26.409 Atomic orbital electron populations 1.21823 0.90566 1.04451 1.03558 1.23270 0.97086 0.79231 1.02324 1.86537 1.24166 1.33906 1.83192 1.25432 0.80994 0.94161 0.71160 1.90602 1.60874 1.43918 1.46280 1.19895 0.95719 0.82541 0.93725 1.21852 0.91695 1.04281 1.00729 1.60715 1.18555 1.47466 1.01970 1.22077 1.00537 0.96072 0.87977 1.21205 0.98186 0.98671 0.94257 1.19481 0.95687 0.95695 0.93944 1.21479 1.28932 1.10909 0.95394 0.94723 1.25992 0.95363 0.99612 0.98255 1.70071 1.39538 1.39959 1.09638 0.85684 0.78657 0.80089 0.78368 1.19086 1.20921 1.17391 1.19308 1.00632 0.97721 0.91762 1.21237 0.98236 0.95183 0.97250 1.21501 0.99265 1.00718 0.92675 1.21573 0.96033 0.94971 1.00685 1.21367 1.00029 0.97152 0.95614 1.21120 0.99011 0.99951 0.94077 0.90870 0.87901 0.92165 0.90767 0.91980 0.90469 0.89059 0.92127 0.82292 0.95993 0.90256 0.92148 0.93028 0.96729 0.96341 0.92518 0.84519 0.83655 0.83312 0.83829 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.29 71.98 0.74 -1.85 16 2 C 0.05 1.23 6.19 71.98 0.45 1.67 16 3 O -0.36 -9.91 9.00 -51.41 -0.46 -10.37 16 4 C 0.44 12.59 5.17 71.23 0.37 12.96 16 5 O -0.53 -16.84 15.84 21.94 0.35 -16.50 16 6 C 0.17 4.43 0.76 2.03 0.00 4.43 16 7 C -0.13 -3.08 7.58 71.98 0.55 -2.54 16 8 N -0.65 -17.49 4.99 -477.65 -2.38 -19.87 16 9 C 0.06 1.96 4.95 86.30 0.43 2.39 16 10 C -0.09 -3.29 5.41 30.59 0.17 -3.12 16 11 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 12 C -0.53 -30.80 9.66 25.60 0.25 -30.55 16 13 H 0.03 2.21 7.99 -2.91 -0.02 2.18 16 14 C 0.00 0.26 5.47 84.65 0.46 0.72 16 15 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 16 Si 0.95 44.84 27.47 68.60 1.88 46.73 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 20 C -0.09 -2.12 4.76 -19.87 -0.09 -2.22 16 21 C -0.10 -2.07 9.14 22.27 0.20 -1.87 16 22 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 23 C -0.11 -1.67 10.05 22.27 0.22 -1.45 16 24 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 25 C -0.12 -2.56 8.82 22.27 0.20 -2.36 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 30 H 0.06 1.48 8.13 -2.38 -0.02 1.46 16 31 H 0.08 1.75 7.12 -2.39 -0.02 1.73 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.54 6.40 -2.39 -0.02 1.53 16 34 H 0.36 9.17 7.20 -89.70 -0.65 8.52 16 35 H 0.02 0.73 6.63 -2.39 -0.02 0.72 16 36 H 0.08 2.47 6.30 -2.39 -0.02 2.45 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.01 0.68 7.20 -2.38 -0.02 0.66 16 40 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 41 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 42 H 0.14 2.79 6.40 -2.91 -0.02 2.78 16 43 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 46 H 0.12 2.51 7.58 -2.91 -0.02 2.48 16 Total: -1.00 -69.89 372.39 4.45 -65.44 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.26 Total: 22.20 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 4.50 Total: -27.74 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.08 Total: -79.76 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.12 Total: -26.87 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal Total: -69.89 4.45 -65.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887127661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.915 kcal (2) G-P(sol) polarization free energy of solvation -69.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds