Wall clock time and date at job start Tue Mar 31 2020 10:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47372 * 2 1 4 4 C 1.34230 * 117.00173 * 180.02562 * 3 2 1 5 5 O 1.20818 * 119.99983 * 0.27497 * 4 3 2 6 6 C 1.50706 * 119.99763 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46740 * 60.00026 * 6 4 3 8 8 C 1.52997 * 109.47238 * 299.99723 * 6 4 3 9 9 C 1.53001 * 109.46997 * 174.99896 * 8 6 4 10 10 C 1.50698 * 109.47039 * 179.97438 * 9 8 6 11 11 C 1.38231 * 120.00355 * 269.73021 * 10 9 8 12 12 C 1.38243 * 120.00086 * 179.76507 * 11 10 9 13 13 C 1.38230 * 119.99771 * 0.51007 * 12 11 10 14 14 C 1.38241 * 120.00181 * 359.74462 * 13 12 11 15 15 C 1.38236 * 119.99914 * 0.02562 * 14 13 12 16 16 N 1.46902 * 109.46577 * 180.02562 * 6 4 3 17 17 C 1.46904 * 110.99949 * 274.99540 * 16 6 4 18 18 C 1.52997 * 109.47280 * 180.02562 * 17 16 6 19 19 C 1.50697 * 109.47196 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00186 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99997 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99626 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99881 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47267 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47152 * 120.00172 * 23 21 19 26 26 H 1.48497 * 109.47095 * 239.99862 * 23 21 19 27 27 H 1.08997 * 109.46822 * 300.00275 * 1 2 3 28 28 H 1.08998 * 109.47020 * 59.99843 * 1 2 3 29 29 H 1.08999 * 109.47195 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46945 * 240.00450 * 2 1 3 31 31 H 1.08998 * 109.47020 * 120.00157 * 2 1 3 32 32 H 1.08993 * 109.47322 * 295.00197 * 8 6 4 33 33 H 1.09002 * 109.47196 * 55.00321 * 8 6 4 34 34 H 1.08993 * 109.47331 * 300.00296 * 9 8 6 35 35 H 1.09001 * 109.46791 * 60.00740 * 9 8 6 36 36 H 1.08005 * 119.99849 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.99848 * 180.23313 * 12 11 10 38 38 H 1.07997 * 120.00241 * 179.72469 * 13 12 11 39 39 H 1.08000 * 120.00185 * 179.97438 * 14 13 12 40 40 H 1.07995 * 119.99987 * 179.97438 * 15 14 13 41 41 H 1.00896 * 111.00544 * 38.95632 * 16 6 4 42 42 H 1.09002 * 109.47300 * 300.00868 * 17 16 6 43 43 H 1.09006 * 109.46967 * 60.00497 * 17 16 6 44 44 H 1.09008 * 109.47067 * 300.00177 * 18 17 16 45 45 H 1.08997 * 109.46978 * 59.99938 * 18 17 16 46 46 H 0.97008 * 119.99581 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0060 6 6 3.9208 2.9374 -0.0012 7 1 3.5851 3.4698 0.8888 8 6 3.4488 3.6840 -1.2504 9 6 3.9302 5.1350 -1.1897 10 6 3.4659 5.8702 -2.4205 11 6 4.2634 5.9014 -3.5491 12 6 3.8353 6.5718 -4.6798 13 6 2.6143 7.2197 -4.6783 14 6 1.8190 7.1930 -3.5479 15 6 2.2450 6.5187 -2.4188 16 7 5.3878 2.8604 -0.0023 17 6 5.9083 2.7138 1.3636 18 6 7.4358 2.6378 1.3219 19 6 7.9697 2.4867 2.7230 20 1 7.2878 2.4491 3.5596 21 6 9.3289 2.3976 2.9369 22 7 10.1593 2.4439 1.9182 23 14 9.9907 2.2095 4.6736 24 1 8.8587 2.1823 5.6344 25 1 10.7575 0.9419 4.7766 26 1 10.8820 3.3543 4.9903 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.8585 3.2021 -2.1381 33 1 2.3599 3.6640 -1.2960 34 1 3.5205 5.6169 -0.3020 35 1 5.0191 5.1550 -1.1443 36 1 5.2196 5.3992 -3.5486 37 1 4.4568 6.5929 -5.5628 38 1 2.2817 7.7472 -5.5600 39 1 0.8652 7.6996 -3.5465 40 1 1.6239 6.4981 -1.5356 41 1 5.7101 2.1100 -0.5946 42 1 5.6037 3.5720 1.9626 43 1 5.5108 1.8011 1.8078 44 1 7.7407 1.7797 0.7227 45 1 7.8329 3.5505 0.8778 46 1 11.1156 2.3815 2.0687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901545733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:13 Heat of formation + Delta-G solvation = -86.386872 kcal Electronic energy + Delta-G solvation = -24406.574924 eV Core-core repulsion = 20874.135329 eV Total energy + Delta-G solvation = -3532.439595 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58287 -39.31198 -37.26695 -35.94771 -34.13932 -32.74368 -31.91228 -30.92374 -30.73629 -28.47085 -26.45744 -24.00182 -23.53712 -22.60443 -22.44691 -20.89972 -20.64234 -20.29907 -17.79715 -16.91428 -16.56919 -16.54702 -16.24379 -15.43843 -15.18862 -14.69825 -14.54593 -14.27884 -14.09628 -13.55799 -13.49556 -13.35669 -13.03717 -12.87347 -12.84747 -12.60770 -12.13316 -12.05021 -11.90182 -11.70934 -11.46079 -11.19843 -11.12675 -10.94701 -10.90120 -10.69721 -10.57541 -10.49574 -10.41675 -10.02694 -9.39553 -9.13275 -8.96658 -8.72443 -8.35441 -8.08727 -5.98196 -4.00383 1.31439 1.35595 2.27922 2.70486 3.32579 3.39778 3.43830 3.74381 4.38626 4.53170 4.61053 4.77219 4.79913 4.82247 4.87929 4.94452 5.06296 5.10500 5.12376 5.28170 5.37356 5.38129 5.44866 5.50866 5.56697 5.59376 5.64343 5.76870 5.83210 5.93763 6.00998 6.13525 6.24548 6.35890 6.40195 6.42422 6.46212 6.47291 6.69620 6.94992 6.98067 7.25649 7.66684 7.73788 7.84660 7.90262 8.06457 8.43894 9.06434 9.63121 11.13311 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.003530 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.036318 B = 7929.858687 C =10418.350196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.360 6.360 4 C 0.431 3.569 5 O -0.502 6.502 6 C 0.096 3.904 7 H 0.113 0.887 8 C -0.091 4.091 9 C -0.076 4.076 10 C -0.074 4.074 11 C -0.115 4.115 12 C -0.120 4.120 13 C -0.131 4.131 14 C -0.122 4.122 15 C -0.120 4.120 16 N -0.656 5.656 17 C 0.060 3.940 18 C 0.027 3.973 19 C -0.520 4.520 20 H 0.054 0.946 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.350 0.650 42 H 0.061 0.939 43 H 0.022 0.978 44 H 0.016 0.984 45 H 0.026 0.974 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.969 4.731 -10.944 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.277 6.277 4 C 0.271 3.729 5 O -0.389 6.389 6 C -0.018 4.018 7 H 0.131 0.869 8 C -0.129 4.129 9 C -0.113 4.113 10 C -0.074 4.074 11 C -0.133 4.133 12 C -0.138 4.138 13 C -0.149 4.149 14 C -0.140 4.140 15 C -0.138 4.138 16 N -0.288 5.288 17 C -0.068 4.068 18 C -0.010 4.010 19 C -0.559 4.559 20 H 0.072 0.928 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.210 1.210 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.171 0.829 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.034 0.966 45 H 0.044 0.956 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.484 5.075 -10.995 23.796 hybrid contribution 0.257 -1.337 1.120 1.763 sum -20.227 3.738 -9.875 22.817 Atomic orbital electron populations 1.21788 0.92811 1.02767 1.03402 1.22987 0.95218 0.80946 1.02496 1.86550 1.25233 1.31876 1.84022 1.25604 0.80500 0.94724 0.72024 1.90697 1.60283 1.43029 1.44871 1.21726 0.90377 0.87956 1.01697 0.86893 1.21459 1.00475 0.94976 0.96038 1.20562 1.03370 0.93109 0.94275 1.20041 0.94238 0.97228 0.95867 1.21190 1.00010 0.99258 0.92796 1.21162 0.96433 0.97956 0.98293 1.21101 0.95141 1.00425 0.98280 1.21113 0.99659 0.99733 0.93538 1.21096 0.96148 0.98153 0.98385 1.61094 1.02356 1.51144 1.14162 1.22315 0.99766 0.98640 0.86088 1.19041 0.87137 0.97785 0.97055 1.21184 0.91749 1.50140 0.92794 0.92755 1.24996 0.97118 0.95357 0.96895 1.69984 1.02673 1.50564 1.29948 0.86535 0.78949 0.77649 0.84850 1.19795 1.21054 1.20964 0.91520 0.91561 0.90470 0.91450 0.91395 0.91326 0.90832 0.91022 0.88667 0.85674 0.86296 0.86545 0.86440 0.86149 0.82922 0.92057 0.95933 0.96609 0.95552 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.77 10.03 -39.26 -0.39 -5.16 16 4 C 0.43 6.63 7.08 36.01 0.26 6.88 16 5 O -0.50 -9.42 15.06 -18.74 -0.28 -9.70 16 6 C 0.10 1.34 2.50 -68.86 -0.17 1.17 16 7 H 0.11 1.48 7.80 -51.93 -0.41 1.07 16 8 C -0.09 -1.06 4.84 -26.73 -0.13 -1.19 16 9 C -0.08 -0.87 5.23 -27.88 -0.15 -1.01 16 10 C -0.07 -0.82 5.13 -104.62 -0.54 -1.36 16 11 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 12 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 13 C -0.13 -1.24 10.05 -39.58 -0.40 -1.63 16 14 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 15 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 16 N -0.66 -11.38 5.55 -107.94 -0.60 -11.98 16 17 C 0.06 1.26 5.32 -3.82 -0.02 1.24 16 18 C 0.03 0.72 5.23 -27.89 -0.15 0.57 16 19 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 20 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 23 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.77 8.00 -51.93 -0.42 0.36 16 34 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.09 1.26 7.69 -51.93 -0.40 0.86 16 36 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.35 6.45 7.74 -39.29 -0.30 6.15 16 42 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 43 H 0.02 0.50 7.63 -51.93 -0.40 0.10 16 44 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -32.37 387.18 -10.18 -42.54 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.80 Total: 3.28 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.66 Total: -15.34 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.14 Total: -38.38 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.68 Total: -14.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.37 -10.18 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901545733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.846 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds