Wall clock time and date at job start Tue Mar 31 2020 10:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47372 * 2 1 4 4 C 1.34230 * 117.00173 * 180.02562 * 3 2 1 5 5 O 1.20818 * 119.99983 * 0.27497 * 4 3 2 6 6 C 1.50706 * 119.99763 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46740 * 60.00026 * 6 4 3 8 8 C 1.52997 * 109.47238 * 299.99723 * 6 4 3 9 9 C 1.53001 * 109.46997 * 174.99896 * 8 6 4 10 10 C 1.50698 * 109.47039 * 179.97438 * 9 8 6 11 11 C 1.38231 * 120.00355 * 269.73021 * 10 9 8 12 12 C 1.38243 * 120.00086 * 179.76507 * 11 10 9 13 13 C 1.38230 * 119.99771 * 0.51007 * 12 11 10 14 14 C 1.38241 * 120.00181 * 359.74462 * 13 12 11 15 15 C 1.38236 * 119.99914 * 0.02562 * 14 13 12 16 16 N 1.46902 * 109.46577 * 180.02562 * 6 4 3 17 17 C 1.46904 * 110.99949 * 274.99540 * 16 6 4 18 18 C 1.52997 * 109.47280 * 180.02562 * 17 16 6 19 19 C 1.50697 * 109.47196 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00186 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99997 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99626 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99881 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47267 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47152 * 120.00172 * 23 21 19 26 26 H 1.48497 * 109.47095 * 239.99862 * 23 21 19 27 27 H 1.08997 * 109.46822 * 300.00275 * 1 2 3 28 28 H 1.08998 * 109.47020 * 59.99843 * 1 2 3 29 29 H 1.08999 * 109.47195 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46945 * 240.00450 * 2 1 3 31 31 H 1.08998 * 109.47020 * 120.00157 * 2 1 3 32 32 H 1.08993 * 109.47322 * 295.00197 * 8 6 4 33 33 H 1.09002 * 109.47196 * 55.00321 * 8 6 4 34 34 H 1.08993 * 109.47331 * 300.00296 * 9 8 6 35 35 H 1.09001 * 109.46791 * 60.00740 * 9 8 6 36 36 H 1.08005 * 119.99849 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.99848 * 180.23313 * 12 11 10 38 38 H 1.07997 * 120.00241 * 179.72469 * 13 12 11 39 39 H 1.08000 * 120.00185 * 179.97438 * 14 13 12 40 40 H 1.07995 * 119.99987 * 179.97438 * 15 14 13 41 41 H 1.00896 * 111.00544 * 38.95632 * 16 6 4 42 42 H 1.09002 * 109.47300 * 300.00868 * 17 16 6 43 43 H 1.09006 * 109.46967 * 60.00497 * 17 16 6 44 44 H 1.09008 * 109.47067 * 300.00177 * 18 17 16 45 45 H 1.08997 * 109.46978 * 59.99938 * 18 17 16 46 46 H 0.97008 * 119.99581 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0060 6 6 3.9208 2.9374 -0.0012 7 1 3.5851 3.4698 0.8888 8 6 3.4488 3.6840 -1.2504 9 6 3.9302 5.1350 -1.1897 10 6 3.4659 5.8702 -2.4205 11 6 4.2634 5.9014 -3.5491 12 6 3.8353 6.5718 -4.6798 13 6 2.6143 7.2197 -4.6783 14 6 1.8190 7.1930 -3.5479 15 6 2.2450 6.5187 -2.4188 16 7 5.3878 2.8604 -0.0023 17 6 5.9083 2.7138 1.3636 18 6 7.4358 2.6378 1.3219 19 6 7.9697 2.4867 2.7230 20 1 7.2878 2.4491 3.5596 21 6 9.3289 2.3976 2.9369 22 7 10.1593 2.4439 1.9182 23 14 9.9907 2.2095 4.6736 24 1 8.8587 2.1823 5.6344 25 1 10.7575 0.9419 4.7766 26 1 10.8820 3.3543 4.9903 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.8585 3.2021 -2.1381 33 1 2.3599 3.6640 -1.2960 34 1 3.5205 5.6169 -0.3020 35 1 5.0191 5.1550 -1.1443 36 1 5.2196 5.3992 -3.5486 37 1 4.4568 6.5929 -5.5628 38 1 2.2817 7.7472 -5.5600 39 1 0.8652 7.6996 -3.5465 40 1 1.6239 6.4981 -1.5356 41 1 5.7101 2.1100 -0.5946 42 1 5.6037 3.5720 1.9626 43 1 5.5108 1.8011 1.8078 44 1 7.7407 1.7797 0.7227 45 1 7.8329 3.5505 0.8778 46 1 11.1156 2.3815 2.0687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901545733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:12 Heat of formation + Delta-G solvation = -103.825131 kcal Electronic energy + Delta-G solvation = -24407.331104 eV Core-core repulsion = 20874.135329 eV Total energy + Delta-G solvation = -3533.195775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80084 -40.09124 -38.48180 -37.24324 -35.71570 -34.41531 -32.83618 -32.06160 -31.66699 -29.97390 -27.69867 -25.81659 -24.51681 -23.40359 -23.34261 -22.56748 -21.71070 -21.49249 -19.00049 -18.55444 -17.95429 -17.62557 -17.40618 -16.56101 -16.42951 -16.01908 -15.74744 -15.58347 -15.36890 -14.76454 -14.53578 -14.44125 -14.16300 -14.05682 -13.79437 -13.68571 -13.47287 -13.16407 -13.05309 -12.90043 -12.82347 -12.60414 -12.50598 -12.38210 -12.14780 -12.01224 -11.84680 -11.60937 -11.53426 -11.47671 -11.40451 -11.23092 -10.58223 -9.72627 -9.66773 -9.44612 -8.21088 -6.32348 0.53949 0.59490 1.05149 1.39304 1.39954 1.53162 1.62352 2.39503 2.96936 3.09924 3.12571 3.56132 3.84357 3.95323 3.98332 4.06369 4.11200 4.23891 4.28683 4.31223 4.40832 4.44036 4.47503 4.56446 4.61968 4.76108 4.77094 4.81163 4.90401 4.91905 5.03147 5.10662 5.11844 5.21741 5.29826 5.38808 5.41188 5.46238 5.64570 5.67786 5.71290 5.71676 5.87938 5.97914 6.13353 6.23465 6.30272 6.63815 6.84197 7.36591 8.91362 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.003530 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.036318 B = 7929.858687 C =10418.350196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.353 6.353 4 C 0.435 3.565 5 O -0.542 6.542 6 C 0.098 3.902 7 H 0.130 0.870 8 C -0.079 4.079 9 C -0.069 4.069 10 C -0.088 4.088 11 C -0.136 4.136 12 C -0.130 4.130 13 C -0.135 4.135 14 C -0.126 4.126 15 C -0.126 4.126 16 N -0.653 5.653 17 C 0.081 3.919 18 C 0.035 3.965 19 C -0.543 4.543 20 H 0.060 0.940 21 C 0.000 4.000 22 N -0.931 5.931 23 Si 0.967 3.033 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.275 1.275 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.343 0.657 42 H 0.074 0.926 43 H 0.010 0.990 44 H -0.016 1.016 45 H 0.003 0.997 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.397 5.610 -10.370 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.269 6.269 4 C 0.278 3.722 5 O -0.432 6.432 6 C -0.015 4.015 7 H 0.148 0.852 8 C -0.117 4.117 9 C -0.106 4.106 10 C -0.088 4.088 11 C -0.154 4.154 12 C -0.148 4.148 13 C -0.153 4.153 14 C -0.144 4.144 15 C -0.144 4.144 16 N -0.284 5.284 17 C -0.048 4.048 18 C -0.003 4.003 19 C -0.582 4.582 20 H 0.078 0.922 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.791 3.209 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.200 1.200 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.093 0.907 43 H 0.028 0.972 44 H 0.002 0.998 45 H 0.021 0.979 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.956 5.970 -10.428 25.910 hybrid contribution 0.940 -1.615 0.852 2.054 sum -22.016 4.355 -9.576 24.400 Atomic orbital electron populations 1.21802 0.89787 1.04363 1.03957 1.23295 0.97535 0.79675 1.02039 1.86537 1.23712 1.33327 1.83301 1.25698 0.81044 0.94539 0.70946 1.90689 1.61304 1.44291 1.46925 1.21854 0.88006 0.87855 1.03791 0.85208 1.21388 1.01449 0.94625 0.94193 1.20452 1.01890 0.93075 0.95223 1.20049 0.95057 0.98096 0.95550 1.21297 1.00136 1.00229 0.93715 1.21399 0.97193 0.97849 0.98392 1.21442 0.94671 0.99948 0.99255 1.21462 1.00561 0.99236 0.93098 1.21334 0.95804 0.97824 0.99430 1.61005 1.04958 1.50692 1.11772 1.21911 0.96186 0.98487 0.88214 1.18871 0.90783 0.95077 0.95558 1.21613 0.92441 1.50266 0.93847 0.92210 1.25979 0.97460 0.94729 1.01619 1.70118 1.03144 1.51283 1.32534 0.85370 0.78440 0.77814 0.79231 1.18563 1.20565 1.20020 0.91095 0.90813 0.88362 0.91696 0.92246 0.92134 0.88788 0.89872 0.91034 0.86503 0.84986 0.84287 0.84009 0.84474 0.83779 0.90728 0.97211 0.99794 0.97884 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 10.29 71.98 0.74 -1.13 16 2 C 0.05 1.03 6.19 71.98 0.45 1.47 16 3 O -0.35 -8.91 10.03 -51.41 -0.52 -9.43 16 4 C 0.44 13.28 7.08 71.24 0.50 13.79 16 5 O -0.54 -20.82 15.06 21.99 0.33 -20.49 16 6 C 0.10 2.69 2.50 44.17 0.11 2.80 16 7 H 0.13 3.19 7.80 -2.39 -0.02 3.17 16 8 C -0.08 -1.75 4.84 30.59 0.15 -1.61 16 9 C -0.07 -1.54 5.23 29.85 0.16 -1.38 16 10 C -0.09 -1.89 5.13 -19.87 -0.10 -1.99 16 11 C -0.14 -3.05 9.70 22.27 0.22 -2.84 16 12 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 13 C -0.14 -2.26 10.05 22.27 0.22 -2.04 16 14 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 15 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 16 N -0.65 -23.31 5.55 -495.42 -2.75 -26.06 16 17 C 0.08 3.47 5.32 86.30 0.46 3.93 16 18 C 0.03 1.89 5.23 29.85 0.16 2.05 16 19 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 21 C 0.00 0.01 5.46 84.66 0.46 0.47 16 22 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 23 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.76 8.00 -2.39 -0.02 1.74 16 34 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 35 H 0.07 1.94 7.69 -2.39 -0.02 1.92 16 36 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.34 13.27 7.74 -89.70 -0.69 12.57 16 42 H 0.07 3.00 8.06 -2.39 -0.02 2.98 16 43 H 0.01 0.44 7.63 -2.38 -0.02 0.42 16 44 H -0.02 -0.99 8.14 -2.38 -0.02 -1.00 16 45 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -71.29 387.18 4.04 -67.25 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.25 Total: 23.38 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 4.42 Total: -24.22 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -2.47 Total: -83.68 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.18 Total: -29.92 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -71.29 4.04 -67.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901545733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.573 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds