Wall clock time and date at job start Tue Mar 31 2020 10:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45194 * 109.47456 * 2 1 4 4 C 1.34234 * 117.00127 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00136 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99749 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47374 * 300.00237 * 6 4 3 8 8 C 1.53006 * 109.47239 * 60.00375 * 6 4 3 9 9 C 1.52997 * 109.47021 * 184.99913 * 8 6 4 10 10 C 1.50706 * 109.46952 * 180.02562 * 9 8 6 11 11 C 1.38238 * 119.99779 * 269.72683 * 10 9 8 12 12 C 1.38235 * 120.00062 * 179.76507 * 11 10 9 13 13 C 1.38233 * 119.99800 * 0.50947 * 12 11 10 14 14 C 1.38241 * 120.00090 * 359.74095 * 13 12 11 15 15 C 1.38228 * 120.00317 * 89.99501 * 10 9 8 16 16 N 1.46902 * 109.47181 * 179.97438 * 6 4 3 17 17 C 1.46901 * 110.99865 * 85.00182 * 16 6 4 18 18 C 1.53000 * 109.47323 * 180.02562 * 17 16 6 19 19 C 1.50699 * 109.47014 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00313 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99886 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99668 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00131 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.47387 * 90.00063 * 23 21 19 25 25 H 1.48499 * 109.47314 * 209.99702 * 23 21 19 26 26 H 1.48499 * 109.47154 * 330.00094 * 23 21 19 27 27 H 1.08999 * 109.46933 * 59.99807 * 1 2 3 28 28 H 1.09000 * 109.47532 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47319 * 300.00114 * 1 2 3 30 30 H 1.09002 * 109.47319 * 239.99886 * 2 1 3 31 31 H 1.09004 * 109.47369 * 120.00047 * 2 1 3 32 32 H 1.09004 * 109.46579 * 304.99353 * 8 6 4 33 33 H 1.08992 * 109.47046 * 64.99536 * 8 6 4 34 34 H 1.09004 * 109.47446 * 299.99458 * 9 8 6 35 35 H 1.08992 * 109.47518 * 59.99913 * 9 8 6 36 36 H 1.08007 * 120.00112 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.00199 * 180.22366 * 12 11 10 38 38 H 1.08002 * 119.99968 * 179.72928 * 13 12 11 39 39 H 1.07995 * 119.99802 * 179.97438 * 14 13 12 40 40 H 1.08002 * 120.00010 * 0.02562 * 15 10 9 41 41 H 1.00897 * 111.00058 * 321.04832 * 16 6 4 42 42 H 1.09005 * 109.47362 * 300.00272 * 17 16 6 43 43 H 1.09000 * 109.47455 * 59.99836 * 17 16 6 44 44 H 1.08999 * 109.47231 * 300.00001 * 18 17 16 45 45 H 1.08998 * 109.46884 * 60.00142 * 18 17 16 46 46 H 0.97007 * 119.99843 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4689 -0.8904 8 6 3.4487 3.6850 1.2486 9 6 3.9301 5.1359 1.1867 10 6 3.4656 5.8722 2.4169 11 6 2.2471 6.5249 2.4129 12 6 1.8188 7.1962 3.5428 13 6 2.6138 7.2237 4.6733 14 6 3.8347 6.5753 4.6757 15 6 4.2605 5.8995 3.5474 16 7 5.3878 2.8604 0.0014 17 6 5.9084 2.7125 -1.3643 18 6 7.4359 2.6354 -1.3223 19 6 7.9699 2.4830 -2.7232 20 1 7.2881 2.4454 -3.5599 21 6 9.3290 2.3917 -2.9367 22 7 10.1593 2.4380 -1.9178 23 14 9.9910 2.2036 -4.6733 24 1 10.2409 3.5465 -5.2561 25 1 11.2613 1.4352 -4.6383 26 1 8.9973 1.4796 -5.5061 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.3598 3.6651 1.2940 33 1 3.8582 3.2038 2.1368 34 1 5.0190 5.1559 1.1413 35 1 3.5206 5.6170 0.2986 36 1 1.6281 6.5076 1.5279 37 1 0.8652 7.7031 3.5409 38 1 2.2812 7.7518 5.5547 39 1 4.4560 6.5971 5.5588 40 1 5.2147 5.3936 3.5490 41 1 5.7100 2.1104 0.5944 42 1 5.5110 1.7995 -1.8078 43 1 5.6040 3.5701 -1.9642 44 1 7.8337 3.5481 -0.8786 45 1 7.7400 1.7775 -0.7226 46 1 11.1155 2.3741 -2.0681 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901545734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:18 Heat of formation + Delta-G solvation = -86.355702 kcal Electronic energy + Delta-G solvation = -24406.560409 eV Core-core repulsion = 20874.122165 eV Total energy + Delta-G solvation = -3532.438244 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58185 -39.31228 -37.26672 -35.94730 -34.13850 -32.74252 -31.91177 -30.92413 -30.73550 -28.46991 -26.45716 -24.00052 -23.53612 -22.60480 -22.44595 -20.89939 -20.64270 -20.29827 -17.79667 -16.91377 -16.56885 -16.54632 -16.24122 -15.43766 -15.18823 -14.69977 -14.54506 -14.28054 -14.09427 -13.55779 -13.49585 -13.35819 -13.03558 -12.87210 -12.84695 -12.60700 -12.13134 -12.04645 -11.90203 -11.70851 -11.46143 -11.19789 -11.13346 -10.92657 -10.90148 -10.69684 -10.57459 -10.51655 -10.41295 -10.02320 -9.39160 -9.14701 -8.96679 -8.72440 -8.35015 -8.08595 -5.97935 -4.00242 1.31451 1.35620 2.27956 2.70495 3.33537 3.39545 3.42966 3.74398 4.38698 4.53198 4.61049 4.77214 4.79948 4.82240 4.87961 4.94475 5.06277 5.10529 5.12418 5.28142 5.37431 5.38264 5.44857 5.50876 5.56719 5.59412 5.64352 5.76888 5.83228 5.93773 6.01005 6.13532 6.24610 6.35973 6.40254 6.42434 6.46223 6.47336 6.69612 6.95050 6.98074 7.25681 7.66684 7.73685 7.84668 7.90328 8.06627 8.43965 9.06356 9.63201 11.13534 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009280 B = 0.003530 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.525961 B = 7930.742484 C =10418.423478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.360 6.360 4 C 0.431 3.569 5 O -0.502 6.502 6 C 0.096 3.904 7 H 0.113 0.887 8 C -0.091 4.091 9 C -0.076 4.076 10 C -0.074 4.074 11 C -0.120 4.120 12 C -0.122 4.122 13 C -0.131 4.131 14 C -0.120 4.120 15 C -0.115 4.115 16 N -0.656 5.656 17 C 0.060 3.940 18 C 0.028 3.972 19 C -0.521 4.521 20 H 0.054 0.946 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.350 0.650 42 H 0.022 0.978 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.016 0.984 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.954 4.742 10.948 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.277 6.277 4 C 0.271 3.729 5 O -0.389 6.389 6 C -0.018 4.018 7 H 0.131 0.869 8 C -0.130 4.130 9 C -0.113 4.113 10 C -0.074 4.074 11 C -0.138 4.138 12 C -0.140 4.140 13 C -0.150 4.150 14 C -0.138 4.138 15 C -0.133 4.133 16 N -0.287 5.287 17 C -0.068 4.068 18 C -0.010 4.010 19 C -0.559 4.559 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.171 0.829 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.464 5.083 10.998 23.782 hybrid contribution 0.247 -1.328 -1.127 1.760 sum -20.217 3.754 9.871 22.810 Atomic orbital electron populations 1.21788 0.92811 1.02767 1.03402 1.22986 0.95216 0.80948 1.02497 1.86550 1.25231 1.31875 1.84025 1.25603 0.80501 0.94722 0.72028 1.90699 1.60281 1.43029 1.44863 1.21726 0.90380 0.87952 1.01702 0.86885 1.21461 1.00474 0.94968 0.96050 1.20563 1.03367 0.93105 0.94280 1.20042 0.94272 0.97209 0.95850 1.21097 0.96150 0.98164 0.98373 1.21111 0.99650 0.99755 0.93525 1.21103 0.95122 1.00439 0.98287 1.21162 0.96443 0.97920 0.98319 1.21185 1.00025 0.99236 0.92807 1.61097 1.02351 1.51163 1.14135 1.22316 0.99767 0.98637 0.86096 1.19035 0.87133 0.97776 0.97036 1.21146 0.91755 1.50258 0.92784 0.92808 1.24992 0.97109 0.95348 0.96890 1.69975 1.02730 1.50482 1.29998 0.86588 0.78386 0.78108 0.84871 1.20618 1.21227 1.19963 0.91527 0.90470 0.91555 0.91395 0.91452 0.90832 0.91325 0.88667 0.91025 0.86148 0.86441 0.86545 0.86296 0.85677 0.82929 0.95926 0.92059 0.95564 0.96606 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.77 10.03 -39.27 -0.39 -5.16 16 4 C 0.43 6.63 7.09 36.00 0.26 6.88 16 5 O -0.50 -9.42 15.05 -18.75 -0.28 -9.70 16 6 C 0.10 1.34 2.50 -68.86 -0.17 1.17 16 7 H 0.11 1.48 7.80 -51.93 -0.41 1.08 16 8 C -0.09 -1.06 4.84 -26.73 -0.13 -1.19 16 9 C -0.08 -0.87 5.23 -27.88 -0.15 -1.01 16 10 C -0.07 -0.82 5.13 -104.62 -0.54 -1.36 16 11 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 12 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 13 C -0.13 -1.24 10.05 -39.58 -0.40 -1.63 16 14 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 15 C -0.11 -1.28 9.70 -39.59 -0.38 -1.66 16 16 N -0.66 -11.38 5.55 -107.95 -0.60 -11.98 16 17 C 0.06 1.26 5.32 -3.82 -0.02 1.24 16 18 C 0.03 0.73 5.23 -27.88 -0.15 0.58 16 19 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 20 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 23 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 32 H 0.07 0.77 8.00 -51.93 -0.42 0.36 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.26 7.70 -51.93 -0.40 0.86 16 35 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.35 6.45 7.75 -39.29 -0.30 6.15 16 42 H 0.02 0.50 7.62 -51.93 -0.40 0.10 16 43 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -32.36 387.17 -10.18 -42.53 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.80 Total: 3.31 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -2.66 Total: -15.35 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.14 Total: -38.39 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.68 Total: -14.87 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.36 -10.18 -42.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901545734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.822 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds