Wall clock time and date at job start Tue Mar 31 2020 10:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45194 * 109.47456 * 2 1 4 4 C 1.34234 * 117.00127 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00136 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99749 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47374 * 300.00237 * 6 4 3 8 8 C 1.53006 * 109.47239 * 60.00375 * 6 4 3 9 9 C 1.52997 * 109.47021 * 184.99913 * 8 6 4 10 10 C 1.50706 * 109.46952 * 180.02562 * 9 8 6 11 11 C 1.38238 * 119.99779 * 269.72683 * 10 9 8 12 12 C 1.38235 * 120.00062 * 179.76507 * 11 10 9 13 13 C 1.38233 * 119.99800 * 0.50947 * 12 11 10 14 14 C 1.38241 * 120.00090 * 359.74095 * 13 12 11 15 15 C 1.38228 * 120.00317 * 89.99501 * 10 9 8 16 16 N 1.46902 * 109.47181 * 179.97438 * 6 4 3 17 17 C 1.46901 * 110.99865 * 85.00182 * 16 6 4 18 18 C 1.53000 * 109.47323 * 180.02562 * 17 16 6 19 19 C 1.50699 * 109.47014 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00313 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99886 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99668 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00131 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.47387 * 90.00063 * 23 21 19 25 25 H 1.48499 * 109.47314 * 209.99702 * 23 21 19 26 26 H 1.48499 * 109.47154 * 330.00094 * 23 21 19 27 27 H 1.08999 * 109.46933 * 59.99807 * 1 2 3 28 28 H 1.09000 * 109.47532 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47319 * 300.00114 * 1 2 3 30 30 H 1.09002 * 109.47319 * 239.99886 * 2 1 3 31 31 H 1.09004 * 109.47369 * 120.00047 * 2 1 3 32 32 H 1.09004 * 109.46579 * 304.99353 * 8 6 4 33 33 H 1.08992 * 109.47046 * 64.99536 * 8 6 4 34 34 H 1.09004 * 109.47446 * 299.99458 * 9 8 6 35 35 H 1.08992 * 109.47518 * 59.99913 * 9 8 6 36 36 H 1.08007 * 120.00112 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.00199 * 180.22366 * 12 11 10 38 38 H 1.08002 * 119.99968 * 179.72928 * 13 12 11 39 39 H 1.07995 * 119.99802 * 179.97438 * 14 13 12 40 40 H 1.08002 * 120.00010 * 0.02562 * 15 10 9 41 41 H 1.00897 * 111.00058 * 321.04832 * 16 6 4 42 42 H 1.09005 * 109.47362 * 300.00272 * 17 16 6 43 43 H 1.09000 * 109.47455 * 59.99836 * 17 16 6 44 44 H 1.08999 * 109.47231 * 300.00001 * 18 17 16 45 45 H 1.08998 * 109.46884 * 60.00142 * 18 17 16 46 46 H 0.97007 * 119.99843 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4689 -0.8904 8 6 3.4487 3.6850 1.2486 9 6 3.9301 5.1359 1.1867 10 6 3.4656 5.8722 2.4169 11 6 2.2471 6.5249 2.4129 12 6 1.8188 7.1962 3.5428 13 6 2.6138 7.2237 4.6733 14 6 3.8347 6.5753 4.6757 15 6 4.2605 5.8995 3.5474 16 7 5.3878 2.8604 0.0014 17 6 5.9084 2.7125 -1.3643 18 6 7.4359 2.6354 -1.3223 19 6 7.9699 2.4830 -2.7232 20 1 7.2881 2.4454 -3.5599 21 6 9.3290 2.3917 -2.9367 22 7 10.1593 2.4380 -1.9178 23 14 9.9910 2.2036 -4.6733 24 1 10.2409 3.5465 -5.2561 25 1 11.2613 1.4352 -4.6383 26 1 8.9973 1.4796 -5.5061 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.3598 3.6651 1.2940 33 1 3.8582 3.2038 2.1368 34 1 5.0190 5.1559 1.1413 35 1 3.5206 5.6170 0.2986 36 1 1.6281 6.5076 1.5279 37 1 0.8652 7.7031 3.5409 38 1 2.2812 7.7518 5.5547 39 1 4.4560 6.5971 5.5588 40 1 5.2147 5.3936 3.5490 41 1 5.7100 2.1104 0.5944 42 1 5.5110 1.7995 -1.8078 43 1 5.6040 3.5701 -1.9642 44 1 7.8337 3.5481 -0.8786 45 1 7.7400 1.7775 -0.7226 46 1 11.1155 2.3741 -2.0681 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901545734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:16 Heat of formation + Delta-G solvation = -103.793431 kcal Electronic energy + Delta-G solvation = -24407.316566 eV Core-core repulsion = 20874.122165 eV Total energy + Delta-G solvation = -3533.194401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80040 -40.09151 -38.48206 -37.24324 -35.71511 -34.41457 -32.83621 -32.06116 -31.66734 -29.97316 -27.69861 -25.81550 -24.51637 -23.40461 -23.34125 -22.56750 -21.71104 -21.49243 -19.00050 -18.55153 -17.95399 -17.62548 -17.40600 -16.56349 -16.42861 -16.01943 -15.74697 -15.58301 -15.36863 -14.76548 -14.53580 -14.43625 -14.16155 -14.05853 -13.79194 -13.68607 -13.47151 -13.17379 -13.04915 -12.88510 -12.81313 -12.60947 -12.50816 -12.39616 -12.14513 -12.01053 -11.84726 -11.60936 -11.53472 -11.47567 -11.40988 -11.24239 -10.57385 -9.72647 -9.66800 -9.44559 -8.20901 -6.32302 0.53974 0.59515 1.05111 1.39226 1.41247 1.51985 1.62320 2.39586 2.96954 3.09957 3.12644 3.56059 3.84350 3.95270 3.98340 4.06384 4.11218 4.23895 4.28675 4.31202 4.40828 4.44084 4.47516 4.56479 4.61991 4.76115 4.77124 4.81147 4.90362 4.91935 5.03139 5.10662 5.11839 5.21743 5.29837 5.38766 5.41052 5.46260 5.64623 5.67797 5.71229 5.71663 5.87941 5.97908 6.13311 6.23475 6.30233 6.63793 6.84070 7.36611 8.91351 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009280 B = 0.003530 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.525961 B = 7930.742484 C =10418.423478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.353 6.353 4 C 0.435 3.565 5 O -0.542 6.542 6 C 0.097 3.903 7 H 0.130 0.870 8 C -0.079 4.079 9 C -0.069 4.069 10 C -0.088 4.088 11 C -0.126 4.126 12 C -0.126 4.126 13 C -0.135 4.135 14 C -0.130 4.130 15 C -0.136 4.136 16 N -0.653 5.653 17 C 0.081 3.919 18 C 0.035 3.965 19 C -0.544 4.544 20 H 0.060 0.940 21 C 0.000 4.000 22 N -0.931 5.931 23 Si 0.967 3.033 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.265 1.265 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.117 0.883 41 H 0.343 0.657 42 H 0.009 0.991 43 H 0.074 0.926 44 H 0.003 0.997 45 H -0.016 1.016 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.383 5.634 10.368 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.269 6.269 4 C 0.278 3.722 5 O -0.432 6.432 6 C -0.015 4.015 7 H 0.148 0.852 8 C -0.117 4.117 9 C -0.106 4.106 10 C -0.088 4.088 11 C -0.144 4.144 12 C -0.144 4.144 13 C -0.153 4.153 14 C -0.148 4.148 15 C -0.154 4.154 16 N -0.284 5.284 17 C -0.048 4.048 18 C -0.003 4.003 19 C -0.583 4.583 20 H 0.078 0.922 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.791 3.209 24 H -0.194 1.194 25 H -0.208 1.208 26 H -0.190 1.190 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.135 0.865 41 H 0.162 0.838 42 H 0.028 0.972 43 H 0.093 0.907 44 H 0.021 0.979 45 H 0.002 0.998 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.937 5.991 10.425 25.898 hybrid contribution 0.928 -1.610 -0.857 2.046 sum -22.009 4.381 9.568 24.396 Atomic orbital electron populations 1.21802 0.89785 1.04364 1.03958 1.23294 0.97535 0.79676 1.02038 1.86538 1.23710 1.33324 1.83303 1.25698 0.81044 0.94537 0.70947 1.90691 1.61304 1.44294 1.46921 1.21854 0.88008 0.87849 1.03798 0.85200 1.21390 1.01447 0.94615 0.94206 1.20453 1.01887 0.93072 0.95228 1.20050 0.95091 0.98079 0.95532 1.21336 0.95806 0.97832 0.99422 1.21459 1.00552 0.99258 0.93086 1.21444 0.94653 0.99963 0.99259 1.21400 0.97202 0.97812 0.98421 1.21293 1.00156 1.00202 0.93723 1.61008 1.04953 1.50710 1.11743 1.21911 0.96184 0.98480 0.88225 1.18865 0.90782 0.95067 0.95544 1.21586 0.92463 1.50378 0.93860 0.92205 1.25978 0.97448 0.94714 1.01621 1.70113 1.03164 1.51219 1.32580 0.85420 0.77686 0.78595 0.79168 1.19351 1.20772 1.18953 0.91103 0.88362 0.90803 0.92256 0.91692 0.88789 0.92127 0.91035 0.89874 0.84474 0.84010 0.84286 0.84987 0.86503 0.83786 0.97222 0.90717 0.97898 0.99795 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 10.29 71.98 0.74 -1.14 16 2 C 0.05 1.03 6.19 71.98 0.45 1.47 16 3 O -0.35 -8.91 10.03 -51.45 -0.52 -9.43 16 4 C 0.44 13.29 7.09 71.23 0.50 13.79 16 5 O -0.54 -20.84 15.05 21.98 0.33 -20.51 16 6 C 0.10 2.69 2.50 44.17 0.11 2.80 16 7 H 0.13 3.19 7.80 -2.39 -0.02 3.17 16 8 C -0.08 -1.75 4.84 30.60 0.15 -1.61 16 9 C -0.07 -1.54 5.23 29.85 0.16 -1.38 16 10 C -0.09 -1.89 5.13 -19.86 -0.10 -1.99 16 11 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 12 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 13 C -0.14 -2.26 10.05 22.27 0.22 -2.04 16 14 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 15 C -0.14 -3.05 9.70 22.27 0.22 -2.84 16 16 N -0.65 -23.31 5.55 -495.43 -2.75 -26.06 16 17 C 0.08 3.47 5.32 86.30 0.46 3.93 16 18 C 0.03 1.91 5.23 29.85 0.16 2.07 16 19 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 21 C 0.00 0.02 5.46 84.65 0.46 0.49 16 22 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 23 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 32 H 0.09 1.76 8.00 -2.39 -0.02 1.74 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.94 7.70 -2.38 -0.02 1.92 16 35 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 36 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 40 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 41 H 0.34 13.27 7.75 -89.70 -0.69 12.57 16 42 H 0.01 0.43 7.62 -2.38 -0.02 0.41 16 43 H 0.07 3.00 8.06 -2.39 -0.02 2.98 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 46 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -71.30 387.17 4.04 -67.26 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.25 Total: 23.48 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 4.42 Total: -24.26 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -2.47 Total: -83.72 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.19 Total: -29.94 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -71.30 4.04 -67.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901545734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.529 kcal (2) G-P(sol) polarization free energy of solvation -71.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds