Wall clock time and date at job start Tue Mar 31 2020 10:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.53122 * 109.52421 * 59.70486 * 8 7 6 10 10 C 1.53030 * 109.27746 * 182.43975 * 9 8 7 11 11 N 1.46846 * 109.52451 * 59.18484 * 10 9 8 12 12 C 1.46903 * 111.00176 * 174.16315 * 11 10 9 13 13 C 1.53004 * 109.46579 * 294.20352 * 12 11 10 14 14 H 1.08998 * 109.46934 * 60.00151 * 13 12 11 15 15 O 1.42900 * 109.46889 * 300.00048 * 13 12 11 16 16 C 1.50705 * 109.46986 * 180.02562 * 13 12 11 17 17 H 1.07995 * 119.99845 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99808 * 179.97438 * 16 13 12 19 19 N 1.31507 * 120.00140 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99500 * 179.97438 * 18 16 13 21 21 H 1.48491 * 109.47693 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46890 * 120.00268 * 20 18 16 23 23 H 1.48503 * 109.46951 * 239.99520 * 20 18 16 24 24 C 1.46859 * 111.19392 * 298.25205 * 11 10 9 25 25 C 1.53037 * 109.51887 * 61.74440 * 24 11 10 26 26 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 27 27 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 31 31 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 32 32 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 33 33 H 1.09002 * 109.52093 * 179.89334 * 8 7 6 34 34 H 1.08999 * 109.50169 * 302.38596 * 9 8 7 35 35 H 1.09002 * 109.49857 * 62.49506 * 9 8 7 36 36 H 1.08994 * 109.46420 * 299.16194 * 10 9 8 37 37 H 1.09007 * 109.45220 * 179.18818 * 10 9 8 38 38 H 1.08996 * 109.47396 * 54.19970 * 12 11 10 39 39 H 1.08998 * 109.47365 * 174.20767 * 12 11 10 40 40 H 0.96699 * 114.00426 * 300.00000 * 15 13 12 41 41 H 0.96998 * 120.00568 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.46000 * 301.72915 * 24 11 10 43 43 H 1.08998 * 109.45132 * 181.75447 * 24 11 10 44 44 H 1.09005 * 109.49996 * 180.87712 * 25 24 11 45 45 H 1.08998 * 109.50176 * 60.76270 * 25 24 11 46 46 H 1.08006 * 120.02917 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0334 3.3533 1.2445 10 6 7.5575 3.4855 1.2070 11 7 7.9578 4.2085 -0.0068 12 6 9.4023 4.4755 -0.0084 13 6 9.7434 5.4426 1.1271 14 1 9.4570 4.9989 2.0806 15 8 9.0324 6.6677 0.9390 16 6 11.2253 5.7170 1.1251 17 1 11.8601 5.2488 0.3875 18 6 11.7703 6.5666 2.0643 19 7 10.9970 7.1379 2.9616 20 14 13.6072 6.9061 2.0622 21 1 14.2497 6.1473 0.9593 22 1 13.8418 8.3591 1.8651 23 1 14.1903 6.4823 3.3606 24 6 7.5562 3.4787 -1.2163 25 6 6.0319 3.3463 -1.2511 26 6 3.4311 1.2849 -0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3203 -0.0106 31 1 1.3339 4.5114 0.0011 32 1 3.7922 4.6381 0.0002 33 1 5.9797 1.5920 0.0010 34 1 5.5823 4.3454 1.2616 35 1 5.7376 2.8029 2.1377 36 1 8.0082 2.4931 1.2039 37 1 7.8959 4.0352 2.0854 38 1 9.9447 3.5410 0.1351 39 1 9.6888 4.9192 -0.9619 40 1 9.2383 7.1186 0.1087 41 1 11.3804 7.7353 3.6226 42 1 8.0068 2.4864 -1.2080 43 1 7.8937 4.0237 -2.0979 44 1 5.7352 2.7911 -2.1410 45 1 5.5809 4.3384 -1.2733 46 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929420563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:22 Heat of formation + Delta-G solvation = -89.937221 kcal Electronic energy + Delta-G solvation = -24897.612628 eV Core-core repulsion = 21365.019078 eV Total energy + Delta-G solvation = -3532.593550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26677 -40.14617 -38.54334 -37.28482 -34.77160 -34.17838 -31.88531 -31.78314 -30.93477 -29.46978 -28.14143 -26.74966 -24.75274 -24.05745 -23.55148 -22.38537 -21.64730 -20.44445 -19.07645 -18.64681 -17.15678 -16.87479 -16.65334 -16.62452 -16.60607 -16.34611 -15.95703 -15.63652 -15.33351 -14.93009 -14.75086 -14.55323 -14.37119 -14.10403 -13.80200 -13.48582 -13.18900 -13.05180 -13.04212 -12.83860 -12.74812 -12.57611 -12.42674 -12.14627 -12.05546 -11.97088 -11.93740 -11.52100 -11.42440 -11.21818 -10.89313 -10.66634 -10.05024 -9.73249 -9.11489 -9.05322 -8.11757 -6.37541 0.38221 0.52015 1.39974 1.41205 1.53338 2.38282 2.39198 2.81200 3.08234 3.14813 3.67323 3.82204 3.95676 3.97060 4.14644 4.27285 4.27615 4.33361 4.36509 4.40540 4.41446 4.45200 4.53595 4.57364 4.59354 4.67029 4.70255 4.74699 4.84411 4.93221 4.98992 5.01920 5.07062 5.08014 5.21241 5.22887 5.36084 5.40475 5.55850 5.62810 5.75866 5.78722 5.85734 6.05130 6.26372 6.38960 6.48650 6.76545 7.36683 7.65895 8.92782 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.038510 B = 0.002475 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.906887 B =11312.700714 C =11462.309729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.115 3.885 4 C -0.215 4.215 5 C -0.081 4.081 6 C -0.159 4.159 7 C -0.035 4.035 8 C -0.042 4.042 9 C -0.095 4.095 10 C 0.059 3.941 11 N -0.536 5.536 12 C 0.048 3.952 13 C 0.237 3.763 14 H 0.020 0.980 15 O -0.569 6.569 16 C -0.587 4.587 17 H 0.058 0.942 18 C 0.025 3.975 19 N -0.899 5.899 20 Si 0.960 3.040 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.054 3.946 25 C -0.096 4.096 26 C -0.165 4.165 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.022 0.978 39 H 0.070 0.930 40 H 0.352 0.648 41 H 0.261 0.739 42 H 0.030 0.970 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.717 -12.383 -8.602 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.070 3.930 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.177 4.177 7 C -0.035 4.035 8 C -0.060 4.060 9 C -0.133 4.133 10 C -0.069 4.069 11 N -0.261 5.261 12 C -0.080 4.080 13 C 0.179 3.821 14 H 0.037 0.963 15 O -0.372 6.372 16 C -0.625 4.625 17 H 0.076 0.924 18 C -0.178 4.178 19 N -0.536 5.536 20 Si 0.785 3.215 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.206 1.206 24 C -0.074 4.074 25 C -0.133 4.133 26 C -0.184 4.184 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.143 0.857 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.157 -12.200 -7.871 25.660 hybrid contribution 1.653 -0.199 -0.067 1.666 sum -19.504 -12.400 -7.938 24.437 Atomic orbital electron populations 1.23323 0.76511 1.05468 1.02231 1.86041 1.23453 1.26992 1.88814 1.19144 0.92346 0.84817 0.96742 1.21462 1.01021 0.91903 1.08987 1.21222 0.94329 0.97956 0.96349 1.21123 0.94287 0.98339 1.03989 1.19621 0.95041 0.92341 0.96519 1.20171 0.90385 0.99900 0.95571 1.21539 0.93527 1.00669 0.97535 1.22016 0.96426 0.95318 0.93188 1.61881 1.15023 1.46929 1.02251 1.22668 0.86691 0.98095 1.00511 1.19180 0.89111 0.81846 0.91950 0.96253 1.86500 1.68759 1.38904 1.43036 1.22093 0.94892 1.29515 1.16031 0.92362 1.25902 1.02409 0.95031 0.94427 1.70229 1.36758 1.29509 1.17122 0.85505 0.79863 0.78005 0.78143 1.18743 1.20442 1.20568 1.22168 0.96380 0.96065 0.92771 1.21572 0.93868 1.00862 0.97042 1.20431 0.91882 0.98219 1.07876 0.91829 0.91654 0.86470 0.83420 0.83659 0.85727 0.90288 0.91663 0.91120 0.95399 0.93064 0.96021 0.91159 0.80412 0.93043 0.95188 0.90414 0.89999 0.91265 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.68 10.50 -92.48 -0.97 -7.65 16 3 C 0.11 2.44 6.69 22.50 0.15 2.59 16 4 C -0.22 -3.87 9.04 22.37 0.20 -3.67 16 5 C -0.08 -1.50 10.04 22.26 0.22 -1.28 16 6 C -0.16 -3.51 8.66 22.28 0.19 -3.32 16 7 C -0.04 -0.81 4.79 -19.88 -0.10 -0.91 16 8 C -0.04 -1.01 2.43 -11.46 -0.03 -1.04 16 9 C -0.09 -2.73 5.22 30.65 0.16 -2.57 16 10 C 0.06 2.06 5.29 86.32 0.46 2.52 16 11 N -0.54 -19.42 4.52 -896.35 -4.05 -23.48 16 12 C 0.05 2.02 4.56 86.30 0.39 2.41 16 13 C 0.24 12.36 2.70 29.85 0.08 12.44 16 14 H 0.02 1.15 6.43 -2.39 -0.02 1.13 16 15 O -0.57 -30.49 12.59 -148.98 -1.88 -32.37 16 16 C -0.59 -32.64 8.76 25.60 0.22 -32.42 16 17 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 18 C 0.02 1.39 5.40 84.66 0.46 1.85 16 19 N -0.90 -54.50 12.84 21.45 0.28 -54.23 16 20 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 C 0.05 1.53 5.46 86.32 0.47 2.00 16 25 C -0.10 -2.30 5.22 30.65 0.16 -2.14 16 26 C -0.17 -3.78 9.61 22.36 0.21 -3.56 16 27 H 0.06 0.55 7.67 -2.39 -0.02 0.54 16 28 H 0.06 0.54 7.65 -2.39 -0.02 0.52 16 29 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.15 1.84 6.30 -2.91 -0.02 1.82 16 31 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 32 H 0.12 2.79 7.05 -2.91 -0.02 2.76 16 33 H 0.08 1.83 7.88 -2.39 -0.02 1.81 16 34 H 0.06 2.01 7.30 -2.39 -0.02 1.99 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 2.15 6.21 -2.38 -0.01 2.14 16 38 H 0.02 0.91 8.12 -2.39 -0.02 0.89 16 39 H 0.07 2.80 7.99 -2.39 -0.02 2.78 16 40 H 0.35 16.85 9.04 -74.06 -0.67 16.18 16 41 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 2.10 8.01 -2.39 -0.02 2.08 16 44 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.07 1.76 7.31 -2.39 -0.02 1.74 16 46 H 0.13 2.78 7.95 -2.91 -0.02 2.75 16 Total: -1.00 -67.79 364.73 0.08 -67.71 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.30 Total: 30.00 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 4.38 Total: -25.78 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -3.78 Total: -77.70 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -2.85 Total: -40.02 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -67.79 0.08 -67.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929420563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.224 kcal (2) G-P(sol) polarization free energy of solvation -67.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds