Wall clock time and date at job start Tue Mar 31 2020 09:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45193 * 109.47629 * 2 1 4 4 C 1.34227 * 117.00286 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00132 * 359.97438 * 4 3 2 6 6 C 1.50708 * 120.00063 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.46772 * 39.99882 * 6 4 3 8 8 C 1.53000 * 109.46881 * 280.00210 * 6 4 3 9 9 C 1.53001 * 109.46829 * 175.00101 * 8 6 4 10 10 C 1.50697 * 109.47016 * 180.02562 * 9 8 6 11 11 C 1.38241 * 119.99920 * 269.72544 * 10 9 8 12 12 C 1.38235 * 120.00080 * 179.76623 * 11 10 9 13 13 C 1.38234 * 119.99503 * 0.50738 * 12 11 10 14 14 C 1.38230 * 120.00451 * 359.74877 * 13 12 11 15 15 C 1.38228 * 120.00457 * 89.99748 * 10 9 8 16 16 N 1.46495 * 109.47043 * 160.00123 * 6 4 3 17 17 C 1.36942 * 119.99963 * 244.18364 * 16 6 4 18 18 H 1.07994 * 119.99985 * 211.30544 * 17 16 6 19 19 C 1.38813 * 119.99850 * 31.30308 * 17 16 6 20 20 N 1.31618 * 119.99811 * 15.58271 * 19 17 16 21 21 Si 1.86793 * 120.00076 * 195.57834 * 19 17 16 22 22 H 1.48504 * 109.47073 * 89.99975 * 21 19 17 23 23 H 1.48503 * 109.47361 * 210.00170 * 21 19 17 24 24 H 1.48503 * 109.47167 * 330.00391 * 21 19 17 25 25 C 1.46497 * 120.00218 * 64.18487 * 16 6 4 26 26 C 1.52996 * 109.47246 * 89.99645 * 25 16 6 27 27 H 1.08996 * 109.47491 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46932 * 300.00112 * 1 2 3 29 29 H 1.09001 * 109.46996 * 59.99861 * 1 2 3 30 30 H 1.09003 * 109.46932 * 239.99888 * 2 1 3 31 31 H 1.09001 * 109.46996 * 120.00139 * 2 1 3 32 32 H 1.08997 * 109.46778 * 294.99367 * 8 6 4 33 33 H 1.08996 * 109.47561 * 54.99918 * 8 6 4 34 34 H 1.08996 * 109.46981 * 299.99997 * 9 8 6 35 35 H 1.08996 * 109.47198 * 59.99595 * 9 8 6 36 36 H 1.08001 * 119.99573 * 359.97438 * 11 10 9 37 37 H 1.07997 * 119.99704 * 180.22789 * 12 11 10 38 38 H 1.08006 * 119.99392 * 179.72010 * 13 12 11 39 39 H 1.08004 * 119.99980 * 179.97438 * 14 13 12 40 40 H 1.08003 * 119.99751 * 0.02562 * 15 10 9 41 41 H 0.97010 * 119.99968 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.47547 * 210.00120 * 25 16 6 43 43 H 1.09003 * 109.47141 * 329.99787 * 25 16 6 44 44 H 1.08993 * 109.47572 * 300.00147 * 26 25 16 45 45 H 1.09003 * 109.46935 * 60.00016 * 26 25 16 46 46 H 1.09001 * 109.47075 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3688 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 1 3.3320 3.5737 0.6617 8 6 3.8848 3.5047 -1.4193 9 6 4.3530 4.9612 -1.3986 10 6 4.3169 5.5203 -2.7976 11 6 5.4307 5.4214 -3.6104 12 6 5.3960 5.9300 -4.8954 13 6 4.2510 6.5467 -5.3638 14 6 3.1390 6.6502 -4.5493 15 6 3.1720 6.1369 -3.2662 16 7 5.3067 2.8922 0.4740 17 6 5.6533 3.5223 1.6394 18 1 6.6441 3.9359 1.7556 19 6 4.7311 3.6292 2.6714 20 7 3.6497 2.8790 2.6679 21 14 5.0250 4.8376 4.0652 22 1 4.4182 6.1483 3.7201 23 1 4.4050 4.3176 5.3103 24 1 6.4855 5.0078 4.2731 25 6 6.3217 2.1732 -0.2999 26 6 6.9659 3.1277 -1.3072 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.5442 2.9202 -2.0608 33 1 2.8663 3.4559 -1.8044 34 1 3.6937 5.5457 -0.7570 35 1 5.3715 5.0100 -1.0136 36 1 6.3269 4.9439 -3.2426 37 1 6.2650 5.8494 -5.5315 38 1 4.2254 6.9480 -6.3662 39 1 2.2446 7.1325 -4.9152 40 1 2.3034 6.2184 -2.6295 41 1 3.0053 2.9534 3.3893 42 1 7.0859 1.7863 0.3742 43 1 5.8537 1.3451 -0.8321 44 1 6.2018 3.5146 -1.9812 45 1 7.4339 3.9559 -0.7749 46 1 7.7215 2.5928 -1.8826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929463901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:07 Heat of formation + Delta-G solvation = -65.993981 kcal Electronic energy + Delta-G solvation = -26288.451895 eV Core-core repulsion = 22756.896602 eV Total energy + Delta-G solvation = -3531.555293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.30867 -40.12863 -38.51112 -36.97985 -34.94953 -33.70232 -32.69566 -31.81349 -31.60732 -30.15166 -27.85707 -25.67529 -24.43255 -23.56681 -23.28014 -22.67034 -21.65535 -21.04027 -18.95310 -18.35054 -17.58987 -17.32168 -16.91617 -16.72535 -16.32130 -15.87180 -15.68253 -15.42977 -14.86937 -14.49978 -14.41105 -14.08873 -13.95299 -13.93787 -13.69252 -13.54398 -13.17821 -13.09976 -12.95855 -12.77912 -12.66486 -12.62129 -12.39377 -12.26086 -12.10157 -12.06512 -12.00272 -11.55431 -11.41670 -11.36409 -11.28346 -10.95494 -10.47933 -9.71555 -9.48632 -8.71154 -7.92670 -5.41692 0.56189 0.60483 1.48574 1.50120 1.58031 1.66006 2.09960 2.51037 2.99385 3.25678 3.52929 3.88210 4.03526 4.06488 4.13562 4.23567 4.28477 4.34589 4.36751 4.37807 4.47610 4.50448 4.66582 4.74727 4.75326 4.79481 4.87974 4.90037 4.94783 5.01167 5.11117 5.14185 5.19291 5.22524 5.28239 5.29033 5.39523 5.47454 5.62007 5.67827 5.70625 5.74004 5.80123 5.90607 6.24401 6.37339 7.02995 7.24519 7.77279 8.28057 9.13982 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.005624 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.891819 B = 4977.040914 C = 6279.941569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.052 3.948 3 O -0.371 6.371 4 C 0.471 3.529 5 O -0.556 6.556 6 C 0.208 3.792 7 H 0.101 0.899 8 C -0.106 4.106 9 C -0.064 4.064 10 C -0.085 4.085 11 C -0.134 4.134 12 C -0.124 4.124 13 C -0.133 4.133 14 C -0.123 4.123 15 C -0.133 4.133 16 N -0.569 5.569 17 C -0.263 4.263 18 H 0.073 0.927 19 C -0.040 4.040 20 N -0.931 5.931 21 Si 0.966 3.034 22 H -0.279 1.279 23 H -0.300 1.300 24 H -0.272 1.272 25 C 0.133 3.867 26 C -0.165 4.165 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.252 0.748 42 H 0.027 0.973 43 H 0.042 0.958 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 4.435 -14.361 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 O -0.287 6.287 4 C 0.315 3.685 5 O -0.446 6.446 6 C 0.097 3.903 7 H 0.118 0.882 8 C -0.145 4.145 9 C -0.101 4.101 10 C -0.085 4.085 11 C -0.152 4.152 12 C -0.142 4.142 13 C -0.151 4.151 14 C -0.141 4.141 15 C -0.151 4.151 16 N -0.290 5.290 17 C -0.393 4.393 18 H 0.091 0.909 19 C -0.236 4.236 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.206 1.206 23 H -0.227 1.227 24 H -0.196 1.196 25 C 0.008 3.992 26 C -0.224 4.224 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.141 0.859 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.142 0.858 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.380 4.106 -14.226 15.188 hybrid contribution 0.144 -0.225 1.563 1.586 sum -3.235 3.880 -12.663 13.634 Atomic orbital electron populations 1.21758 0.90057 1.04153 1.03453 1.23079 0.97378 0.80830 1.00893 1.86560 1.25680 1.32419 1.84024 1.25843 0.79580 0.94632 0.68474 1.90426 1.60923 1.44760 1.48472 1.19939 0.86923 0.87604 0.95798 0.88164 1.21923 1.01261 0.96520 0.94813 1.20414 1.03075 0.93912 0.92736 1.20035 0.94587 0.98055 0.95820 1.21319 0.98308 1.00692 0.94840 1.21419 0.99217 0.98119 0.95458 1.21450 0.93156 0.99739 1.00742 1.21416 0.99463 0.99580 0.93632 1.21282 0.97758 0.99062 0.96980 1.43919 1.02413 1.58813 1.23838 1.19459 0.99670 1.28549 0.91582 0.90894 1.25803 0.98289 1.00145 0.99404 1.70086 1.13369 1.39937 1.34205 0.85288 0.77858 0.78965 0.78428 1.20560 1.22703 1.19649 1.20995 0.91075 0.93647 0.93475 1.22523 1.00672 1.00011 0.99210 0.88021 0.92180 0.90697 0.91779 0.94007 0.91888 0.91259 0.92040 0.90415 0.85922 0.84221 0.83790 0.84062 0.85757 0.93873 0.95404 0.93951 0.91214 0.93484 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 10.29 71.98 0.74 -2.72 16 2 C 0.05 1.87 6.18 71.98 0.45 2.31 16 3 O -0.37 -16.30 10.22 -51.38 -0.53 -16.82 16 4 C 0.47 23.06 6.50 71.24 0.46 23.52 16 5 O -0.56 -29.62 13.96 21.99 0.31 -29.31 16 6 C 0.21 9.70 1.69 44.25 0.07 9.78 16 7 H 0.10 5.24 6.04 -2.39 -0.01 5.23 16 8 C -0.11 -3.95 4.11 30.59 0.13 -3.83 16 9 C -0.06 -2.18 4.48 29.85 0.13 -2.05 16 10 C -0.08 -2.46 5.13 -19.87 -0.10 -2.56 16 11 C -0.13 -3.52 9.38 22.27 0.21 -3.31 16 12 C -0.12 -2.69 10.05 22.27 0.22 -2.46 16 13 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 14 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 15 C -0.13 -3.41 9.70 22.27 0.22 -3.20 16 16 N -0.57 -27.88 1.75 -682.21 -1.19 -29.08 16 17 C -0.26 -13.93 9.56 84.03 0.80 -13.13 16 18 H 0.07 3.80 7.88 -2.91 -0.02 3.77 16 19 C -0.04 -2.18 4.90 84.86 0.42 -1.76 16 20 N -0.93 -53.42 10.74 21.65 0.23 -53.19 16 21 Si 0.97 43.94 29.58 68.60 2.03 45.97 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C 0.13 5.88 5.26 86.38 0.45 6.34 16 26 C -0.17 -5.72 8.70 71.98 0.63 -5.09 16 27 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 32 H 0.06 2.32 5.89 -2.39 -0.01 2.31 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 35 H 0.08 2.87 5.90 -2.39 -0.01 2.85 16 36 H 0.12 3.17 6.41 -2.91 -0.02 3.15 16 37 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 40 H 0.12 3.00 8.06 -2.91 -0.02 2.97 16 41 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 42 H 0.03 1.29 8.04 -2.39 -0.02 1.27 16 43 H 0.04 1.96 6.05 -2.39 -0.01 1.95 16 44 H 0.07 2.28 2.33 -2.39 -0.01 2.28 16 45 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 46 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -66.11 365.87 7.08 -59.03 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.96 Total: 26.31 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.28 Total: -2.91 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -0.96 Total: -82.27 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.22 Total: -46.13 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -66.11 7.08 -59.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929463901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.965 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds