Wall clock time and date at job start Tue Mar 31 2020 09:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47279 * 2 1 4 4 C 1.37094 * 120.00119 * 264.74546 * 3 2 1 5 5 H 1.07992 * 120.00310 * 146.16367 * 4 3 2 6 6 C 1.38953 * 119.99780 * 326.16643 * 4 3 2 7 7 N 1.31407 * 120.00381 * 337.68504 * 6 4 3 8 8 Si 1.86801 * 119.99897 * 157.68083 * 6 4 3 9 9 H 1.48501 * 109.47363 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47077 * 120.00102 * 8 6 4 11 11 H 1.48505 * 109.47380 * 240.00259 * 8 6 4 12 12 C 1.34773 * 120.00091 * 84.74690 * 3 2 1 13 13 O 1.21291 * 119.99963 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00046 * 0.02562 * 12 3 2 15 15 C 1.53008 * 109.47005 * 180.02562 * 14 12 3 16 16 H 1.08994 * 109.46710 * 304.99432 * 15 14 12 17 17 C 1.52999 * 109.47115 * 64.99790 * 15 14 12 18 18 C 1.53002 * 109.46891 * 184.99768 * 15 14 12 19 19 C 1.50697 * 109.46989 * 174.99610 * 18 15 14 20 20 C 1.38287 * 119.96845 * 90.00315 * 19 18 15 21 21 C 1.38248 * 120.11211 * 179.74500 * 20 19 18 22 22 C 1.38158 * 120.05478 * 359.95895 * 21 20 19 23 23 C 1.38718 * 119.94504 * 0.02562 * 22 21 20 24 24 O 1.35903 * 120.05384 * 180.02562 * 23 22 21 25 25 C 1.42889 * 117.00277 * 359.97438 * 24 23 22 26 26 C 1.38115 * 119.97517 * 269.72215 * 19 18 15 27 27 H 1.09004 * 109.47276 * 300.00139 * 1 2 3 28 28 H 1.08999 * 109.47228 * 60.00120 * 1 2 3 29 29 H 1.08996 * 109.47230 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47373 * 239.99355 * 2 1 3 31 31 H 1.09009 * 109.47077 * 119.99932 * 2 1 3 32 32 H 0.96998 * 120.00394 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47372 * 60.00364 * 14 12 3 34 34 H 1.09004 * 109.47071 * 299.99671 * 14 12 3 35 35 H 1.09000 * 109.47197 * 179.97438 * 17 15 14 36 36 H 1.08995 * 109.47205 * 299.99983 * 17 15 14 37 37 H 1.09002 * 109.46827 * 60.00124 * 17 15 14 38 38 H 1.09000 * 109.46861 * 55.00095 * 18 15 14 39 39 H 1.09000 * 109.47371 * 295.00199 * 18 15 14 40 40 H 1.08008 * 119.94684 * 359.72099 * 20 19 18 41 41 H 1.08000 * 119.97195 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.03208 * 179.97438 * 22 21 20 43 43 H 1.08996 * 109.47165 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.47553 * 300.00498 * 25 24 23 45 45 H 1.09000 * 109.47212 * 60.00381 * 25 24 23 46 46 H 1.08000 * 120.03017 * 0.26096 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1816 3.0505 -1.3089 6 6 2.9007 1.2465 -2.2177 7 7 3.5051 0.1087 -1.9594 8 14 2.7826 1.8628 -3.9772 9 1 2.0593 3.1596 -4.0000 10 1 4.1486 2.0488 -4.5293 11 1 2.0466 0.8704 -4.8011 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1958 1.1622 14 6 1.7789 1.3814 2.4620 15 6 2.0093 2.3546 3.6200 16 1 3.0366 2.7176 3.5905 17 6 1.0467 3.5369 3.4917 18 6 1.7602 1.6358 4.9474 19 6 2.1051 2.5564 6.0896 20 6 1.1374 3.3875 6.6234 21 6 1.4492 4.2294 7.6747 22 6 2.7290 4.2417 8.1952 23 6 3.7015 3.4087 7.6616 24 8 4.9609 3.4186 8.1722 25 6 5.2137 4.3124 9.2580 26 6 3.3860 2.5652 6.6061 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.8897 -0.4114 -2.6822 33 1 2.4009 0.4972 2.6009 34 1 0.7295 1.0874 2.4382 35 1 1.2105 4.2300 4.3168 36 1 1.2242 4.0490 2.5460 37 1 0.0194 3.1738 3.5211 38 1 2.3832 0.7429 4.9996 39 1 0.7103 1.3507 5.0148 40 1 0.1362 3.3792 6.2182 41 1 0.6918 4.8779 8.0896 42 1 2.9723 4.8998 9.0161 43 1 6.2543 4.2208 9.5692 44 1 5.0190 5.3363 8.9388 45 1 4.5608 4.0621 10.0942 46 1 4.1414 1.9157 6.1891 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930619642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:42 Heat of formation + Delta-G solvation = -59.756929 kcal Electronic energy + Delta-G solvation = -24992.961872 eV Core-core repulsion = 21461.677037 eV Total energy + Delta-G solvation = -3531.284835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.25077 -38.83543 -37.84237 -35.56624 -34.53310 -32.03415 -31.29972 -30.32363 -29.38849 -27.57524 -27.42442 -26.30203 -24.55753 -22.65183 -22.21998 -21.45144 -19.98135 -18.47277 -17.79060 -16.70911 -16.34352 -16.00931 -15.88403 -15.79114 -14.96464 -14.83924 -14.44405 -14.04153 -13.78150 -13.53436 -13.31368 -13.18813 -12.83793 -12.69288 -12.43494 -12.07230 -11.90724 -11.76879 -11.74775 -11.56756 -11.24513 -11.14901 -11.07230 -10.95155 -10.82439 -10.55503 -10.39399 -10.30080 -10.26924 -10.08349 -9.96650 -8.88442 -8.78836 -8.22575 -8.19886 -7.41343 -6.27997 -3.88090 1.30720 1.43731 3.15003 3.18081 3.28956 3.35605 3.73469 4.00900 4.20386 4.68590 4.72633 4.90867 4.92421 4.93386 5.04291 5.10043 5.20008 5.24556 5.33765 5.42773 5.49194 5.53446 5.67940 5.82046 5.90322 6.00055 6.01959 6.06920 6.14735 6.17542 6.25812 6.28280 6.34369 6.39737 6.45924 6.51725 6.60555 6.67228 6.75488 6.87608 6.94000 7.02325 7.32493 7.32584 7.64882 8.31694 8.58683 9.26915 9.50396 10.11392 10.75797 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024090 B = 0.002828 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.007508 B = 9896.962401 C =10282.020835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.444 5.444 4 C -0.304 4.304 5 H 0.091 0.909 6 C 0.033 3.967 7 N -0.871 5.871 8 Si 0.914 3.086 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.459 3.541 13 O -0.580 6.580 14 C -0.130 4.130 15 C -0.064 4.064 16 H 0.077 0.923 17 C -0.151 4.151 18 C -0.081 4.081 19 C -0.028 4.028 20 C -0.151 4.151 21 C -0.082 4.082 22 C -0.218 4.218 23 C 0.125 3.875 24 O -0.319 6.319 25 C 0.029 3.971 26 C -0.149 4.149 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.266 0.734 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 1.809 18.980 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.164 5.164 4 C -0.432 4.432 5 H 0.109 0.891 6 C -0.170 4.170 7 N -0.510 5.510 8 Si 0.741 3.259 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.207 1.207 12 C 0.248 3.752 13 O -0.464 6.464 14 C -0.171 4.171 15 C -0.083 4.083 16 H 0.095 0.905 17 C -0.208 4.208 18 C -0.118 4.118 19 C -0.028 4.028 20 C -0.169 4.169 21 C -0.100 4.100 22 C -0.237 4.237 23 C 0.081 3.919 24 O -0.232 6.232 25 C -0.066 4.066 26 C -0.167 4.167 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.116 0.884 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.448 2.114 18.793 19.224 hybrid contribution -0.090 0.254 -0.645 0.699 sum -3.538 2.368 18.149 18.641 Atomic orbital electron populations 1.22207 0.98378 1.00211 1.01425 1.21568 0.91603 0.85668 1.04029 1.43559 1.55923 1.11826 1.05049 1.19485 1.39335 0.95387 0.88969 0.89111 1.25308 0.94719 0.96567 1.00432 1.69930 1.32997 1.15384 1.32649 0.86062 0.78072 0.79067 0.82674 1.19253 1.20865 1.20671 1.20291 0.82166 0.87901 0.84855 1.90474 1.50362 1.18765 1.86804 1.21703 1.02115 0.99040 0.94212 1.20772 1.01348 0.95216 0.90958 0.90488 1.21983 0.97406 0.97966 1.03400 1.20809 1.02081 0.96804 0.92136 1.19723 0.92225 0.95831 0.95043 1.20997 0.99792 0.98179 0.97907 1.20884 0.95565 0.97808 0.95760 1.21143 0.94537 1.03660 1.04369 1.19007 0.83588 0.95437 0.93916 1.86076 1.27277 1.60762 1.49109 1.23017 1.02480 0.93056 0.88090 1.20348 0.97217 1.01868 0.97285 0.93904 0.92561 0.93220 0.87025 0.93460 0.92401 0.90409 0.90559 0.93347 0.90091 0.94040 0.90825 0.90791 0.85840 0.86053 0.85911 0.88394 0.92733 0.92846 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.15 37.15 0.38 -2.58 16 2 C 0.10 2.08 5.43 -4.05 -0.02 2.06 16 3 N -0.44 -11.28 2.56 -114.81 -0.29 -11.57 16 4 C -0.30 -8.50 8.98 -14.93 -0.13 -8.63 16 5 H 0.09 2.67 7.70 -52.49 -0.40 2.27 16 6 C 0.03 0.88 4.92 -17.47 -0.09 0.80 16 7 N -0.87 -23.62 11.33 55.50 0.63 -23.00 16 8 Si 0.91 20.80 29.61 -169.99 -5.03 15.76 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.46 11.12 7.31 -10.99 -0.08 11.04 16 13 O -0.58 -15.94 13.79 5.55 0.08 -15.86 16 14 C -0.13 -2.37 3.78 -27.88 -0.11 -2.48 16 15 C -0.06 -1.06 2.03 -90.62 -0.18 -1.24 16 16 H 0.08 1.46 7.95 -51.93 -0.41 1.05 16 17 C -0.15 -2.50 8.50 37.16 0.32 -2.18 16 18 C -0.08 -1.05 4.84 -27.88 -0.13 -1.19 16 19 C -0.03 -0.37 4.71 -104.65 -0.49 -0.86 16 20 C -0.15 -1.79 7.96 -39.56 -0.31 -2.11 16 21 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 22 C -0.22 -2.44 9.04 -39.43 -0.36 -2.79 16 23 C 0.13 1.62 6.69 -39.21 -0.26 1.36 16 24 O -0.32 -3.90 10.50 -19.43 -0.20 -4.10 16 25 C 0.03 0.22 9.81 101.05 0.99 1.21 16 26 C -0.15 -2.02 9.64 -39.44 -0.38 -2.40 16 27 H 0.04 0.72 6.60 -51.93 -0.34 0.37 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.11 2.70 5.34 -51.93 -0.28 2.42 16 31 H 0.05 0.93 6.66 -51.92 -0.35 0.59 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.08 1.34 7.41 -51.93 -0.38 0.95 16 34 H 0.08 1.25 6.54 -51.93 -0.34 0.91 16 35 H 0.05 0.74 6.26 -51.93 -0.33 0.41 16 36 H 0.08 1.64 5.95 -51.93 -0.31 1.33 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.12 1.31 8.03 -52.48 -0.42 0.89 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.07 6.30 -52.49 -0.33 0.74 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 45 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 46 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -31.89 366.15 -7.77 -39.66 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.20 Total: 4.88 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.27 Total: -11.29 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.34 Total: -34.57 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.13 Total: -19.96 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.89 -7.77 -39.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.098 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds