Wall clock time and date at job start Tue Mar 31 2020 09:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47279 * 2 1 4 4 C 1.37094 * 120.00119 * 264.74546 * 3 2 1 5 5 H 1.07992 * 120.00310 * 146.16367 * 4 3 2 6 6 C 1.38953 * 119.99780 * 326.16643 * 4 3 2 7 7 N 1.31407 * 120.00381 * 337.68504 * 6 4 3 8 8 Si 1.86801 * 119.99897 * 157.68083 * 6 4 3 9 9 H 1.48501 * 109.47363 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47077 * 120.00102 * 8 6 4 11 11 H 1.48505 * 109.47380 * 240.00259 * 8 6 4 12 12 C 1.34773 * 120.00091 * 84.74690 * 3 2 1 13 13 O 1.21291 * 119.99963 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00046 * 0.02562 * 12 3 2 15 15 C 1.53008 * 109.47005 * 180.02562 * 14 12 3 16 16 H 1.08994 * 109.46710 * 304.99432 * 15 14 12 17 17 C 1.52999 * 109.47115 * 64.99790 * 15 14 12 18 18 C 1.53002 * 109.46891 * 184.99768 * 15 14 12 19 19 C 1.50697 * 109.46989 * 174.99610 * 18 15 14 20 20 C 1.38287 * 119.96845 * 90.00315 * 19 18 15 21 21 C 1.38248 * 120.11211 * 179.74500 * 20 19 18 22 22 C 1.38158 * 120.05478 * 359.95895 * 21 20 19 23 23 C 1.38718 * 119.94504 * 0.02562 * 22 21 20 24 24 O 1.35903 * 120.05384 * 180.02562 * 23 22 21 25 25 C 1.42889 * 117.00277 * 359.97438 * 24 23 22 26 26 C 1.38115 * 119.97517 * 269.72215 * 19 18 15 27 27 H 1.09004 * 109.47276 * 300.00139 * 1 2 3 28 28 H 1.08999 * 109.47228 * 60.00120 * 1 2 3 29 29 H 1.08996 * 109.47230 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47373 * 239.99355 * 2 1 3 31 31 H 1.09009 * 109.47077 * 119.99932 * 2 1 3 32 32 H 0.96998 * 120.00394 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47372 * 60.00364 * 14 12 3 34 34 H 1.09004 * 109.47071 * 299.99671 * 14 12 3 35 35 H 1.09000 * 109.47197 * 179.97438 * 17 15 14 36 36 H 1.08995 * 109.47205 * 299.99983 * 17 15 14 37 37 H 1.09002 * 109.46827 * 60.00124 * 17 15 14 38 38 H 1.09000 * 109.46861 * 55.00095 * 18 15 14 39 39 H 1.09000 * 109.47371 * 295.00199 * 18 15 14 40 40 H 1.08008 * 119.94684 * 359.72099 * 20 19 18 41 41 H 1.08000 * 119.97195 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.03208 * 179.97438 * 22 21 20 43 43 H 1.08996 * 109.47165 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.47553 * 300.00498 * 25 24 23 45 45 H 1.09000 * 109.47212 * 60.00381 * 25 24 23 46 46 H 1.08000 * 120.03017 * 0.26096 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1816 3.0505 -1.3089 6 6 2.9007 1.2465 -2.2177 7 7 3.5051 0.1087 -1.9594 8 14 2.7826 1.8628 -3.9772 9 1 2.0593 3.1596 -4.0000 10 1 4.1486 2.0488 -4.5293 11 1 2.0466 0.8704 -4.8011 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1958 1.1622 14 6 1.7789 1.3814 2.4620 15 6 2.0093 2.3546 3.6200 16 1 3.0366 2.7176 3.5905 17 6 1.0467 3.5369 3.4917 18 6 1.7602 1.6358 4.9474 19 6 2.1051 2.5564 6.0896 20 6 1.1374 3.3875 6.6234 21 6 1.4492 4.2294 7.6747 22 6 2.7290 4.2417 8.1952 23 6 3.7015 3.4087 7.6616 24 8 4.9609 3.4186 8.1722 25 6 5.2137 4.3124 9.2580 26 6 3.3860 2.5652 6.6061 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.8897 -0.4114 -2.6822 33 1 2.4009 0.4972 2.6009 34 1 0.7295 1.0874 2.4382 35 1 1.2105 4.2300 4.3168 36 1 1.2242 4.0490 2.5460 37 1 0.0194 3.1738 3.5211 38 1 2.3832 0.7429 4.9996 39 1 0.7103 1.3507 5.0148 40 1 0.1362 3.3792 6.2182 41 1 0.6918 4.8779 8.0896 42 1 2.9723 4.8998 9.0161 43 1 6.2543 4.2208 9.5692 44 1 5.0190 5.3363 8.9388 45 1 4.5608 4.0621 10.0942 46 1 4.1414 1.9157 6.1891 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930619642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:41 Heat of formation + Delta-G solvation = -77.330960 kcal Electronic energy + Delta-G solvation = -24993.723939 eV Core-core repulsion = 21461.677037 eV Total energy + Delta-G solvation = -3532.046902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.15532 -40.54302 -38.86153 -37.14896 -36.10564 -33.98515 -32.35716 -31.27722 -31.08501 -28.96552 -28.32774 -27.34142 -26.41386 -23.94281 -23.50778 -22.55074 -21.25313 -20.15975 -18.79676 -18.57945 -17.62900 -17.19939 -16.90222 -16.80363 -16.62898 -16.34619 -15.91497 -15.32143 -15.07305 -14.80793 -14.53080 -14.44094 -14.38793 -13.90701 -13.58749 -13.50184 -13.37295 -13.11436 -12.87137 -12.85327 -12.64874 -12.58722 -12.51609 -12.21462 -12.08136 -12.04705 -11.94266 -11.72955 -11.70227 -11.47952 -11.47045 -10.84520 -10.17448 -9.70446 -9.39919 -9.09575 -8.31512 -5.99762 0.40049 0.53535 1.35552 1.40786 1.54442 2.13596 2.31424 2.39822 2.81649 3.04833 3.18077 3.79747 3.91131 4.01430 4.04741 4.15330 4.29046 4.33012 4.34656 4.38510 4.47610 4.51757 4.58330 4.60126 4.66376 4.71737 4.72806 4.80660 4.85506 4.93354 4.96509 5.05332 5.12847 5.14310 5.24094 5.36711 5.37045 5.47873 5.50037 5.54712 5.60324 5.64914 5.76154 5.90256 6.24899 6.49620 6.59961 7.24816 7.56728 8.17324 8.70610 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024090 B = 0.002828 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.007508 B = 9896.962401 C =10282.020835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.459 5.459 4 C -0.338 4.338 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.889 5.889 8 Si 0.977 3.023 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.263 1.263 12 C 0.444 3.556 13 O -0.625 6.625 14 C -0.118 4.118 15 C -0.058 4.058 16 H 0.041 0.959 17 C -0.143 4.143 18 C -0.070 4.070 19 C -0.041 4.041 20 C -0.158 4.158 21 C -0.082 4.082 22 C -0.219 4.219 23 C 0.110 3.890 24 O -0.343 6.343 25 C 0.019 3.981 26 C -0.174 4.174 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.272 0.728 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.140 0.860 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.116 0.884 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 1.152 20.517 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.179 5.179 4 C -0.467 4.467 5 H 0.078 0.922 6 C -0.201 4.201 7 N -0.528 5.528 8 Si 0.801 3.199 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.187 1.187 12 C 0.235 3.765 13 O -0.512 6.512 14 C -0.157 4.157 15 C -0.077 4.077 16 H 0.059 0.941 17 C -0.200 4.200 18 C -0.107 4.107 19 C -0.041 4.041 20 C -0.176 4.176 21 C -0.100 4.100 22 C -0.237 4.237 23 C 0.065 3.935 24 O -0.257 6.257 25 C -0.075 4.075 26 C -0.193 4.193 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.165 0.835 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.153 1.422 20.342 21.032 hybrid contribution 0.522 0.505 -1.055 1.281 sum -4.631 1.927 19.286 19.928 Atomic orbital electron populations 1.22095 0.95311 1.02402 1.01290 1.21680 0.94108 0.83566 1.03667 1.43863 1.56134 1.13113 1.04743 1.19384 1.41420 0.94652 0.91199 0.92212 1.26021 0.93772 0.96686 1.03665 1.69994 1.32802 1.16005 1.33956 0.85134 0.78061 0.78641 0.78030 1.19784 1.20593 1.18722 1.21340 0.81143 0.87537 0.86509 1.90446 1.52130 1.20899 1.87729 1.21672 1.03851 0.99103 0.91110 1.20672 0.99324 0.95215 0.92497 0.94067 1.21873 0.98766 0.97970 1.01363 1.20693 1.03722 0.96522 0.89743 1.19773 0.92376 0.96570 0.95401 1.21255 1.00212 0.97916 0.98191 1.21277 0.96080 0.97522 0.95118 1.21468 0.94286 1.03251 1.04694 1.19207 0.84370 0.95828 0.94089 1.86042 1.27171 1.62012 1.50464 1.23315 1.04038 0.92746 0.87373 1.20477 0.97609 1.02819 0.98414 0.92375 0.94354 0.89770 0.89547 0.91532 0.91793 0.89099 0.87719 0.92279 0.94436 0.91584 0.90145 0.88337 0.84228 0.83130 0.83467 0.86618 0.92005 0.91347 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 10.15 71.98 0.73 -4.48 16 2 C 0.09 3.99 5.43 86.38 0.47 4.46 16 3 N -0.46 -23.83 2.56 -635.55 -1.63 -25.46 16 4 C -0.34 -19.64 8.98 84.04 0.75 -18.88 16 5 H 0.06 3.75 7.70 -2.91 -0.02 3.73 16 6 C 0.00 0.02 4.92 84.93 0.42 0.44 16 7 N -0.89 -48.64 11.33 21.66 0.25 -48.39 16 8 Si 0.98 43.21 29.61 68.60 2.03 45.24 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 C 0.44 22.08 7.31 87.66 0.64 22.73 16 13 O -0.63 -36.22 13.79 -3.06 -0.04 -36.26 16 14 C -0.12 -4.17 3.78 29.85 0.11 -4.06 16 15 C -0.06 -1.90 2.03 -10.79 -0.02 -1.92 16 16 H 0.04 1.63 7.95 -2.39 -0.02 1.61 16 17 C -0.14 -4.68 8.50 71.98 0.61 -4.06 16 18 C -0.07 -1.69 4.84 29.85 0.14 -1.54 16 19 C -0.04 -1.03 4.71 -19.88 -0.09 -1.12 16 20 C -0.16 -3.39 7.96 22.28 0.18 -3.21 16 21 C -0.08 -1.56 10.04 22.25 0.22 -1.34 16 22 C -0.22 -4.44 9.04 22.37 0.20 -4.24 16 23 C 0.11 2.79 6.69 22.51 0.15 2.94 16 24 O -0.34 -8.29 10.50 -92.46 -0.97 -9.26 16 25 C 0.02 0.27 9.81 113.37 1.11 1.38 16 26 C -0.17 -4.80 9.64 22.36 0.22 -4.58 16 27 H 0.06 1.78 6.60 -2.38 -0.02 1.77 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.09 4.18 5.34 -2.39 -0.01 4.17 16 31 H 0.07 2.53 6.66 -2.38 -0.02 2.52 16 32 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.09 2.99 7.41 -2.39 -0.02 2.98 16 34 H 0.10 3.12 6.54 -2.38 -0.02 3.11 16 35 H 0.06 1.77 6.26 -2.39 -0.01 1.75 16 36 H 0.04 1.56 5.95 -2.39 -0.01 1.55 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.83 8.08 -2.39 -0.02 1.81 16 39 H 0.10 1.92 8.09 -2.39 -0.02 1.90 16 40 H 0.14 2.49 8.03 -2.91 -0.02 2.47 16 41 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.15 2.15 6.30 -2.91 -0.02 2.13 16 43 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 44 H 0.06 0.76 7.66 -2.38 -0.02 0.74 16 45 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 46 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -73.33 366.15 6.45 -66.88 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.96 Total: 24.75 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 5.85 Total: -17.50 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -1.38 Total: -73.85 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.01 Total: -45.52 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -73.33 6.45 -66.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.452 kcal (2) G-P(sol) polarization free energy of solvation -73.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds