Wall clock time and date at job start Tue Mar 31 2020 10:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45194 * 109.47331 * 2 1 4 4 C 1.34236 * 116.99926 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99883 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99666 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.46940 * 59.99948 * 6 4 3 8 8 C 1.53000 * 109.47106 * 299.99870 * 6 4 3 9 9 C 1.52998 * 109.46946 * 175.00508 * 8 6 4 10 10 C 1.50702 * 109.47039 * 179.97438 * 9 8 6 11 11 C 1.38234 * 119.99744 * 269.72547 * 10 9 8 12 12 C 1.38234 * 119.99465 * 179.76696 * 11 10 9 13 13 C 1.38243 * 120.00288 * 0.50626 * 12 11 10 14 14 C 1.38227 * 119.99717 * 359.74465 * 13 12 11 15 15 C 1.38238 * 120.00457 * 0.02562 * 14 13 12 16 16 N 1.46901 * 109.46742 * 180.02562 * 6 4 3 17 17 C 1.46905 * 110.99870 * 274.99779 * 16 6 4 18 18 H 1.09004 * 109.46962 * 34.99990 * 17 16 6 19 19 C 1.52999 * 109.47094 * 274.99984 * 17 16 6 20 20 C 1.50696 * 109.47161 * 155.00107 * 17 16 6 21 21 H 1.08005 * 119.99735 * 0.02562 * 20 17 16 22 22 C 1.37879 * 120.00295 * 180.02562 * 20 17 16 23 23 N 1.31514 * 119.99693 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 120.00152 * 180.02562 * 22 20 17 25 25 H 1.48502 * 109.47180 * 89.99600 * 24 22 20 26 26 H 1.48499 * 109.47108 * 209.99836 * 24 22 20 27 27 H 1.48500 * 109.47012 * 329.99731 * 24 22 20 28 28 H 1.08999 * 109.47161 * 59.99589 * 1 2 3 29 29 H 1.09003 * 109.47529 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47320 * 299.99801 * 1 2 3 31 31 H 1.09004 * 109.46838 * 239.99632 * 2 1 3 32 32 H 1.08999 * 109.47161 * 120.00411 * 2 1 3 33 33 H 1.09000 * 109.46957 * 294.99916 * 8 6 4 34 34 H 1.08999 * 109.47080 * 55.00352 * 8 6 4 35 35 H 1.09000 * 109.46809 * 299.99498 * 9 8 6 36 36 H 1.08999 * 109.47359 * 60.00014 * 9 8 6 37 37 H 1.07995 * 120.00177 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.00213 * 180.22730 * 12 11 10 39 39 H 1.07996 * 119.99918 * 179.72780 * 13 12 11 40 40 H 1.08004 * 119.99980 * 179.97438 * 14 13 12 41 41 H 1.07995 * 120.00365 * 179.97438 * 15 14 13 42 42 H 1.00901 * 111.00067 * 38.94954 * 16 6 4 43 43 H 1.08997 * 109.47624 * 300.00377 * 19 17 16 44 44 H 1.09006 * 109.47163 * 60.00429 * 19 17 16 45 45 H 1.08999 * 109.47123 * 179.97438 * 19 17 16 46 46 H 0.96996 * 119.99950 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4689 0.8905 8 6 3.4487 3.6850 -1.2486 9 6 3.9302 5.1359 -1.1867 10 6 3.4657 5.8722 -2.4168 11 6 4.2632 5.9043 -3.5454 12 6 3.8349 6.5756 -4.6754 13 6 2.6138 7.2237 -4.6732 14 6 1.8187 7.1959 -3.5429 15 6 2.2447 6.5206 -2.4144 16 7 5.3878 2.8603 -0.0014 17 6 5.9085 2.7124 1.3643 18 1 5.2204 2.1041 1.9516 19 6 6.0470 4.0927 2.0097 20 6 7.2573 2.0421 1.3178 21 1 7.6852 1.7550 0.3686 22 6 7.9452 1.7951 2.4870 23 7 7.4239 2.1442 3.6428 24 14 9.6175 0.9648 2.4292 25 1 10.6790 1.9970 2.3145 26 1 9.8233 0.1792 3.6724 27 1 9.6797 0.0582 1.2547 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8583 3.2039 -2.1367 34 1 2.3598 3.6651 -1.2940 35 1 3.5206 5.6170 -0.2985 36 1 5.0190 5.1558 -1.1413 37 1 5.2193 5.4021 -3.5455 38 1 4.4563 6.5977 -5.5585 39 1 2.2813 7.7519 -5.5546 40 1 0.8649 7.7026 -3.5410 41 1 1.6237 6.4993 -1.5312 42 1 5.7100 2.1103 -0.5944 43 1 6.7348 4.7010 1.4225 44 1 5.0713 4.5776 2.0434 45 1 6.4328 3.9829 3.0231 46 1 7.9079 1.9709 4.4653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930869232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:34 Heat of formation + Delta-G solvation = -94.652930 kcal Electronic energy + Delta-G solvation = -25126.116521 eV Core-core repulsion = 21593.318482 eV Total energy + Delta-G solvation = -3532.798039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72228 -40.07468 -38.49341 -37.25712 -35.72634 -33.96002 -32.74434 -31.70701 -31.65271 -29.35220 -27.48627 -26.99451 -24.52198 -23.39605 -23.33038 -22.27392 -21.62384 -21.27850 -19.05966 -18.46511 -17.74259 -17.55134 -17.25279 -16.90084 -16.25434 -15.90530 -15.62454 -15.44846 -15.16306 -14.72209 -14.49262 -14.20541 -14.13349 -13.82866 -13.66416 -13.55411 -13.38054 -12.99690 -12.91273 -12.81839 -12.72775 -12.58468 -12.48249 -12.32545 -12.20446 -12.04884 -11.91478 -11.65939 -11.57152 -11.50692 -11.39782 -10.92087 -10.58802 -9.71024 -9.52743 -9.30413 -8.14327 -6.26451 0.55915 0.61102 1.14094 1.39793 1.40149 1.50660 1.69728 2.40378 2.98935 3.14685 3.38500 3.64240 3.93583 3.95844 4.03746 4.08739 4.15726 4.26582 4.30524 4.33910 4.44238 4.49021 4.61631 4.77124 4.78941 4.82451 4.83486 4.90339 4.93958 5.07479 5.11113 5.13056 5.20305 5.23642 5.31804 5.41886 5.45928 5.49822 5.63649 5.69476 5.72686 5.85406 5.90709 6.21582 6.24939 6.29678 6.57017 6.75616 6.91063 7.42086 8.91554 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.004211 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.941676 B = 6647.432412 C = 8683.512801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.357 6.357 4 C 0.432 3.568 5 O -0.538 6.538 6 C 0.098 3.902 7 H 0.111 0.889 8 C -0.075 4.075 9 C -0.066 4.066 10 C -0.086 4.086 11 C -0.134 4.134 12 C -0.129 4.129 13 C -0.135 4.135 14 C -0.126 4.126 15 C -0.128 4.128 16 N -0.643 5.643 17 C 0.218 3.782 18 H -0.036 1.036 19 C -0.112 4.112 20 C -0.532 4.532 21 H 0.054 0.946 22 C 0.014 3.986 23 N -0.917 5.917 24 Si 0.959 3.041 25 H -0.270 1.270 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.337 0.663 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.055 0.945 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 6.670 -13.345 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.273 6.273 4 C 0.274 3.726 5 O -0.427 6.427 6 C -0.015 4.015 7 H 0.129 0.871 8 C -0.113 4.113 9 C -0.104 4.104 10 C -0.086 4.086 11 C -0.152 4.152 12 C -0.146 4.146 13 C -0.153 4.153 14 C -0.143 4.143 15 C -0.146 4.146 16 N -0.274 5.274 17 C 0.110 3.890 18 H -0.018 1.018 19 C -0.171 4.171 20 C -0.570 4.570 21 H 0.072 0.928 22 C -0.185 4.185 23 N -0.556 5.556 24 Si 0.784 3.216 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.074 0.926 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.217 7.028 -13.161 21.311 hybrid contribution 1.026 -1.936 0.685 2.295 sum -14.191 5.092 -12.476 19.570 Atomic orbital electron populations 1.21795 0.89578 1.04403 1.03930 1.23276 0.97668 0.79880 1.01804 1.86540 1.23956 1.33217 1.83580 1.25839 0.80885 0.94850 0.71027 1.90681 1.61239 1.44222 1.46519 1.21859 0.89416 0.87464 1.02787 0.87143 1.21361 1.01055 0.94765 0.94166 1.20419 1.01977 0.92931 0.95059 1.20033 0.95064 0.97940 0.95536 1.21286 1.00156 1.00167 0.93557 1.21405 0.97153 0.97731 0.98358 1.21442 0.94688 0.99990 0.99152 1.21444 1.00574 0.99228 0.93086 1.21320 0.95865 0.98019 0.99433 1.61139 1.03432 1.49903 1.12883 1.18938 0.92902 0.92993 0.84172 1.01840 1.21547 0.98116 0.96242 1.01149 1.21507 1.03967 1.38636 0.92932 0.92794 1.25664 1.01542 0.96235 0.95072 1.70009 1.39511 1.48202 0.97920 0.85545 0.80060 0.78626 0.77325 1.19569 1.20934 1.19827 0.90609 0.88205 0.91306 0.91584 0.92852 0.91940 0.89346 0.90612 0.90792 0.86289 0.84732 0.84155 0.84066 0.84899 0.84342 0.94655 0.95055 0.92617 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 10.29 71.98 0.74 -1.65 16 2 C 0.05 1.25 6.19 71.98 0.45 1.70 16 3 O -0.36 -11.24 10.03 -51.47 -0.52 -11.76 16 4 C 0.43 16.35 6.96 71.24 0.50 16.85 16 5 O -0.54 -24.64 15.40 21.98 0.34 -24.31 16 6 C 0.10 3.43 2.31 44.17 0.10 3.53 16 7 H 0.11 3.86 7.12 -2.39 -0.02 3.84 16 8 C -0.08 -2.05 4.84 30.59 0.15 -1.91 16 9 C -0.07 -1.73 5.23 29.85 0.16 -1.58 16 10 C -0.09 -2.04 5.13 -19.86 -0.10 -2.14 16 11 C -0.13 -3.13 9.70 22.27 0.22 -2.92 16 12 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 13 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 14 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 15 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 16 N -0.64 -27.19 5.35 -477.14 -2.55 -29.74 16 17 C 0.22 11.26 2.24 44.17 0.10 11.36 16 18 H -0.04 -2.11 7.64 -2.38 -0.02 -2.13 16 19 C -0.11 -5.44 9.17 71.98 0.66 -4.78 16 20 C -0.53 -30.30 8.59 25.60 0.22 -30.08 16 21 H 0.05 3.06 7.62 -2.91 -0.02 3.04 16 22 C 0.01 0.79 5.30 84.66 0.45 1.24 16 23 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 24 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 32 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 2.10 7.99 -2.39 -0.02 2.08 16 35 H 0.08 1.87 8.09 -2.39 -0.02 1.85 16 36 H 0.07 2.24 7.69 -2.39 -0.02 2.22 16 37 H 0.12 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.34 15.21 7.24 -89.69 -0.65 14.56 16 43 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.03 1.30 7.43 -2.38 -0.02 1.29 16 45 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 46 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -67.61 381.23 4.36 -63.25 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.30 Total: 28.35 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 4.52 Total: -19.26 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -2.31 Total: -83.43 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.18 Total: -36.06 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.61 4.36 -63.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930869232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.400 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds