Wall clock time and date at job start Tue Mar 31 2020 09:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38802 * 120.02194 * 359.97438 * 4 3 2 6 6 C 1.38150 * 120.05462 * 179.97438 * 5 4 3 7 7 C 1.38205 * 120.10676 * 0.04701 * 6 5 4 8 8 C 1.50695 * 119.97064 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47352 * 260.00072 * 8 7 6 10 10 C 1.47480 * 111.00270 * 265.97440 * 9 8 7 11 11 C 1.53509 * 87.93444 * 221.29552 * 10 9 8 12 12 C 1.50700 * 114.34543 * 139.67997 * 11 10 9 13 13 H 1.07999 * 120.00242 * 266.07607 * 12 11 10 14 14 C 1.37875 * 119.99946 * 86.07662 * 12 11 10 15 15 N 1.31514 * 120.00221 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00162 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47156 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46952 * 120.00125 * 16 14 12 19 19 H 1.48493 * 109.47254 * 240.00173 * 16 14 12 20 20 C 1.47475 * 111.00305 * 170.00115 * 9 8 7 21 21 C 1.38744 * 120.05648 * 359.97438 * 7 6 5 22 22 O 1.35898 * 120.03289 * 179.97438 * 21 7 6 23 23 C 1.42889 * 117.00702 * 179.97438 * 22 21 7 24 24 C 1.52998 * 109.47375 * 180.02562 * 23 22 21 25 25 C 1.38607 * 120.03444 * 179.72224 * 4 3 2 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.07999 * 119.97286 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.94668 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47210 * 20.00415 * 8 7 6 34 34 H 1.08995 * 109.47260 * 140.00096 * 8 7 6 35 35 H 1.09006 * 113.47200 * 336.06154 * 10 9 8 36 36 H 1.08993 * 113.47671 * 106.52582 * 10 9 8 37 37 H 1.09000 * 114.17311 * 272.37808 * 11 10 9 38 38 H 0.96995 * 120.00239 * 179.97438 * 15 14 12 39 39 H 1.09001 * 113.47699 * 253.47137 * 20 9 8 40 40 H 1.09000 * 113.48039 * 23.87606 * 20 9 8 41 41 H 1.09000 * 109.47584 * 300.00425 * 23 22 21 42 42 H 1.09008 * 109.46986 * 60.00042 * 23 22 21 43 43 H 1.08998 * 109.47275 * 299.99911 * 24 23 22 44 44 H 1.08995 * 109.47109 * 60.00170 * 24 23 22 45 45 H 1.09003 * 109.46878 * 180.02562 * 24 23 22 46 46 H 1.08005 * 120.04688 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1996 0.4250 -0.0005 6 6 5.5693 0.6053 -0.0016 7 6 6.1006 1.8811 -0.0017 8 6 7.5951 2.0742 -0.0023 9 7 8.0505 2.3754 1.3614 10 6 8.1320 3.8313 1.5820 11 6 9.4479 3.5876 2.3341 12 6 10.5218 4.6070 2.0536 13 1 11.2553 4.4206 1.2832 14 6 10.5678 5.7776 2.7806 15 7 9.6749 6.0045 3.7191 16 14 11.8993 7.0410 2.4334 17 1 12.7740 6.5501 1.3384 18 1 11.2708 8.3235 2.0270 19 1 12.7112 7.2538 3.6584 20 6 9.5222 2.3363 1.4479 21 6 5.2591 2.9843 -0.0013 22 8 5.7820 4.2386 -0.0009 23 6 4.8567 5.3274 -0.0010 24 6 5.6255 6.6502 -0.0012 25 6 3.8841 2.8059 -0.0064 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7868 -0.5730 0.0003 32 1 6.2259 -0.2522 -0.0020 33 1 8.0791 1.1631 -0.3542 34 1 7.8543 2.9016 -0.6629 35 1 8.2569 4.4034 0.6626 36 1 7.3351 4.2197 2.2160 37 1 9.3225 3.3756 3.3959 38 1 9.7075 6.8278 4.2308 39 1 9.9034 1.4576 1.9683 40 1 10.0181 2.5084 0.4927 41 1 4.2301 5.2716 -0.8912 42 1 4.2295 5.2713 0.8888 43 1 6.2523 6.7062 0.8888 44 1 6.2523 6.7060 -0.8911 45 1 4.9195 7.4807 -0.0008 46 1 3.2273 3.6633 -0.0101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138977736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:28 Heat of formation + Delta-G solvation = -21.938353 kcal Electronic energy + Delta-G solvation = -25390.034134 eV Core-core repulsion = 21860.389236 eV Total energy + Delta-G solvation = -3529.644898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48871 -39.13586 -38.47307 -36.60537 -32.94013 -32.25660 -31.61129 -30.87645 -29.66774 -27.82677 -25.28639 -24.66512 -24.09090 -23.61170 -22.43330 -21.21910 -20.58101 -18.73181 -18.46265 -16.62856 -16.46624 -16.29134 -16.17264 -15.86881 -15.37190 -14.72571 -14.36422 -14.12905 -13.89302 -13.68575 -13.47831 -13.31239 -13.03371 -12.76758 -12.58123 -12.44124 -12.07641 -11.94627 -11.74857 -11.59500 -11.41069 -11.20578 -11.03389 -10.93094 -10.89465 -10.70409 -10.47058 -10.33368 -10.11750 -9.60953 -9.16164 -8.81543 -8.42869 -8.36531 -7.85847 -7.67430 -5.98577 -4.02052 1.51330 1.60771 3.05229 3.30686 3.38917 3.42787 3.45742 3.87645 4.45368 4.68111 4.70935 4.91551 4.97335 5.05908 5.09334 5.11935 5.16117 5.25095 5.30598 5.35833 5.40663 5.47357 5.51827 5.63859 5.66920 5.77173 5.81658 5.89229 6.02477 6.08376 6.27891 6.30423 6.37771 6.42312 6.52972 6.64733 6.69838 6.80788 6.81611 6.92192 7.35306 7.35708 7.38297 7.67080 7.81444 8.00438 8.24164 8.47131 9.00794 9.61857 11.10961 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.003402 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.334284 B = 8227.835191 C = 9014.997912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.158 3.842 5 C -0.249 4.249 6 C -0.033 4.033 7 C -0.126 4.126 8 C 0.070 3.930 9 N -0.480 5.480 10 C 0.025 3.975 11 C 0.036 3.964 12 C -0.511 4.511 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.006 4.006 21 C 0.182 3.818 22 O -0.293 6.293 23 C 0.056 3.944 24 C -0.154 4.154 25 C -0.246 4.246 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.259 0.741 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.888 -8.599 -9.384 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.113 3.887 5 C -0.268 4.268 6 C -0.052 4.052 7 C -0.127 4.127 8 C -0.058 4.058 9 N -0.203 5.203 10 C -0.104 4.104 11 C 0.017 3.983 12 C -0.550 4.550 13 H 0.075 0.925 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.135 4.135 21 C 0.135 3.865 22 O -0.206 6.206 23 C -0.019 4.019 24 C -0.211 4.211 25 C -0.266 4.266 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.327 -8.684 -8.847 20.500 hybrid contribution 0.784 1.012 -0.759 1.489 sum -15.542 -7.672 -9.607 19.817 Atomic orbital electron populations 1.21774 0.92954 1.02717 1.03445 1.22746 0.95587 0.82178 1.01488 1.86022 1.19400 1.29156 1.88733 1.18543 0.81832 0.93441 0.94929 1.21005 0.94185 0.97568 1.14011 1.20592 0.93939 0.95888 0.94799 1.19114 0.95684 0.90520 1.07431 1.21356 0.90287 1.00651 0.93502 1.68917 1.12616 1.17661 1.21092 1.23937 1.00415 0.86330 0.99723 1.20145 0.92515 0.90474 0.95148 1.21073 1.12791 1.02199 1.18903 0.92518 1.24999 0.95652 0.98182 0.94754 1.69988 1.34748 1.25470 1.22147 0.86609 0.82101 0.81541 0.78179 1.19773 1.21066 1.21005 1.23993 0.88473 1.00842 1.00183 1.18506 0.90233 0.84966 0.92823 1.86278 1.35186 1.11619 1.87472 1.22776 0.92249 0.86067 1.00843 1.21777 1.01146 0.93700 1.04437 1.20304 0.93890 0.96056 1.16323 0.90465 0.91546 0.91636 0.92090 0.91968 0.85822 0.85350 0.91577 0.93140 0.92590 0.92434 0.92095 0.93080 0.92248 0.92996 0.92567 0.92118 0.90447 0.91657 0.90833 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.50 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.12 10.13 -19.42 -0.20 -4.32 16 4 C 0.16 2.27 6.68 -39.24 -0.26 2.01 16 5 C -0.25 -3.32 9.04 -39.41 -0.36 -3.68 16 6 C -0.03 -0.49 9.66 -39.63 -0.38 -0.87 16 7 C -0.13 -2.15 5.48 -104.45 -0.57 -2.72 16 8 C 0.07 1.29 4.70 -4.98 -0.02 1.26 16 9 N -0.48 -10.27 6.32 -246.12 -1.55 -11.82 16 10 C 0.02 0.59 5.72 -7.55 -0.04 0.55 16 11 C 0.04 0.94 3.76 -91.24 -0.34 0.59 16 12 C -0.51 -14.14 8.83 -34.44 -0.30 -14.44 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -25.79 13.26 55.43 0.74 -25.05 16 16 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.01 -0.14 7.24 -7.55 -0.05 -0.19 16 21 C 0.18 3.09 6.65 -39.24 -0.26 2.83 16 22 O -0.29 -5.12 7.49 -19.42 -0.15 -5.26 16 23 C 0.06 0.77 5.46 37.16 0.20 0.98 16 24 C -0.15 -2.05 10.28 37.16 0.38 -1.67 16 25 C -0.25 -3.77 8.97 -39.29 -0.35 -4.12 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 30 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 31 H 0.12 1.31 6.29 -52.49 -0.33 0.98 16 32 H 0.13 1.60 8.03 -52.49 -0.42 1.18 16 33 H 0.07 1.08 7.94 -51.93 -0.41 0.66 16 34 H 0.05 0.97 7.01 -51.93 -0.36 0.60 16 35 H 0.06 1.37 7.09 -51.93 -0.37 1.00 16 36 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 41 H 0.06 0.66 7.65 -51.93 -0.40 0.27 16 42 H 0.06 0.81 7.67 -51.92 -0.40 0.41 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.13 1.81 6.30 -52.48 -0.33 1.48 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -30.75 372.27 -10.03 -40.78 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.57 Total: 1.51 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.88 Total: -17.67 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.82 Total: -36.87 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.34 Total: -9.58 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.75 -10.03 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138977736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.838 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds