Wall clock time and date at job start Tue Mar 31 2020 09:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38802 * 120.02194 * 359.97438 * 4 3 2 6 6 C 1.38150 * 120.05462 * 179.97438 * 5 4 3 7 7 C 1.38205 * 120.10676 * 0.04701 * 6 5 4 8 8 C 1.50695 * 119.97064 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47352 * 260.00072 * 8 7 6 10 10 C 1.47480 * 111.00270 * 265.97440 * 9 8 7 11 11 C 1.53509 * 87.93444 * 221.29552 * 10 9 8 12 12 C 1.50700 * 114.34543 * 139.67997 * 11 10 9 13 13 H 1.07999 * 120.00242 * 266.07607 * 12 11 10 14 14 C 1.37875 * 119.99946 * 86.07662 * 12 11 10 15 15 N 1.31514 * 120.00221 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00162 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47156 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46952 * 120.00125 * 16 14 12 19 19 H 1.48493 * 109.47254 * 240.00173 * 16 14 12 20 20 C 1.47475 * 111.00305 * 170.00115 * 9 8 7 21 21 C 1.38744 * 120.05648 * 359.97438 * 7 6 5 22 22 O 1.35898 * 120.03289 * 179.97438 * 21 7 6 23 23 C 1.42889 * 117.00702 * 179.97438 * 22 21 7 24 24 C 1.52998 * 109.47375 * 180.02562 * 23 22 21 25 25 C 1.38607 * 120.03444 * 179.72224 * 4 3 2 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.07999 * 119.97286 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.94668 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47210 * 20.00415 * 8 7 6 34 34 H 1.08995 * 109.47260 * 140.00096 * 8 7 6 35 35 H 1.09006 * 113.47200 * 336.06154 * 10 9 8 36 36 H 1.08993 * 113.47671 * 106.52582 * 10 9 8 37 37 H 1.09000 * 114.17311 * 272.37808 * 11 10 9 38 38 H 0.96995 * 120.00239 * 179.97438 * 15 14 12 39 39 H 1.09001 * 113.47699 * 253.47137 * 20 9 8 40 40 H 1.09000 * 113.48039 * 23.87606 * 20 9 8 41 41 H 1.09000 * 109.47584 * 300.00425 * 23 22 21 42 42 H 1.09008 * 109.46986 * 60.00042 * 23 22 21 43 43 H 1.08998 * 109.47275 * 299.99911 * 24 23 22 44 44 H 1.08995 * 109.47109 * 60.00170 * 24 23 22 45 45 H 1.09003 * 109.46878 * 180.02562 * 24 23 22 46 46 H 1.08005 * 120.04688 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1996 0.4250 -0.0005 6 6 5.5693 0.6053 -0.0016 7 6 6.1006 1.8811 -0.0017 8 6 7.5951 2.0742 -0.0023 9 7 8.0505 2.3754 1.3614 10 6 8.1320 3.8313 1.5820 11 6 9.4479 3.5876 2.3341 12 6 10.5218 4.6070 2.0536 13 1 11.2553 4.4206 1.2832 14 6 10.5678 5.7776 2.7806 15 7 9.6749 6.0045 3.7191 16 14 11.8993 7.0410 2.4334 17 1 12.7740 6.5501 1.3384 18 1 11.2708 8.3235 2.0270 19 1 12.7112 7.2538 3.6584 20 6 9.5222 2.3363 1.4479 21 6 5.2591 2.9843 -0.0013 22 8 5.7820 4.2386 -0.0009 23 6 4.8567 5.3274 -0.0010 24 6 5.6255 6.6502 -0.0012 25 6 3.8841 2.8059 -0.0064 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7868 -0.5730 0.0003 32 1 6.2259 -0.2522 -0.0020 33 1 8.0791 1.1631 -0.3542 34 1 7.8543 2.9016 -0.6629 35 1 8.2569 4.4034 0.6626 36 1 7.3351 4.2197 2.2160 37 1 9.3225 3.3756 3.3959 38 1 9.7075 6.8278 4.2308 39 1 9.9034 1.4576 1.9683 40 1 10.0181 2.5084 0.4927 41 1 4.2301 5.2716 -0.8912 42 1 4.2295 5.2713 0.8888 43 1 6.2523 6.7062 0.8888 44 1 6.2523 6.7060 -0.8911 45 1 4.9195 7.4807 -0.0008 46 1 3.2273 3.6633 -0.0101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138977736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:27 Heat of formation + Delta-G solvation = -41.133411 kcal Electronic energy + Delta-G solvation = -25390.866494 eV Core-core repulsion = 21860.389236 eV Total energy + Delta-G solvation = -3530.477258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65754 -40.50490 -39.91093 -37.73816 -34.80865 -33.48251 -32.67864 -32.04836 -30.80549 -29.45308 -27.04253 -26.48213 -25.12222 -24.71236 -23.91366 -22.28163 -21.84509 -20.40760 -19.77517 -18.62815 -17.57671 -17.33565 -17.25146 -16.91834 -16.78159 -16.52206 -16.03380 -15.66691 -15.22139 -15.07235 -14.64339 -14.42316 -14.10113 -13.89529 -13.76322 -13.44303 -13.40853 -13.32478 -13.16325 -12.95663 -12.83404 -12.74341 -12.58388 -12.35814 -12.15027 -12.00028 -11.80447 -11.68216 -11.53491 -11.39570 -11.07509 -10.81621 -10.46554 -9.64899 -9.54454 -8.88520 -8.12325 -6.23371 0.37446 0.45464 1.41388 1.42727 1.54779 2.11811 2.37955 2.43426 2.70893 3.16552 3.55191 3.75934 3.94913 4.00333 4.01365 4.06635 4.08049 4.10932 4.27980 4.30143 4.33185 4.39507 4.45276 4.49962 4.52414 4.61505 4.76942 4.80906 4.87321 4.89628 4.91523 4.93867 4.95535 5.00718 5.11980 5.20567 5.24036 5.32805 5.34312 5.48760 5.63195 5.65233 5.70491 5.88240 6.33177 6.36249 6.45456 6.54049 6.85483 7.44272 8.97633 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.003402 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.334284 B = 8227.835191 C = 9014.997912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.158 3.842 5 C -0.243 4.243 6 C -0.030 4.030 7 C -0.156 4.156 8 C 0.076 3.924 9 N -0.479 5.479 10 C 0.049 3.951 11 C 0.017 3.983 12 C -0.526 4.526 13 H 0.058 0.942 14 C 0.014 3.986 15 N -0.921 5.921 16 Si 0.957 3.043 17 H -0.264 1.264 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.009 3.991 21 C 0.163 3.837 22 O -0.321 6.321 23 C 0.051 3.949 24 C -0.148 4.148 25 C -0.258 4.258 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.029 0.971 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.696 -10.091 -10.765 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.112 3.888 5 C -0.262 4.262 6 C -0.048 4.048 7 C -0.158 4.158 8 C -0.052 4.052 9 N -0.202 5.202 10 C -0.081 4.081 11 C -0.002 4.002 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.185 4.185 15 N -0.560 5.560 16 Si 0.782 3.218 17 H -0.188 1.188 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.119 4.119 21 C 0.117 3.883 22 O -0.235 6.235 23 C -0.023 4.023 24 C -0.205 4.205 25 C -0.277 4.277 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.109 0.891 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.145 -10.197 -10.239 22.422 hybrid contribution 0.892 1.389 -0.330 1.683 sum -16.253 -8.808 -10.569 21.295 Atomic orbital electron populations 1.21811 0.91399 1.04265 1.03102 1.23116 0.96891 0.80540 1.02550 1.86030 1.18441 1.31746 1.88321 1.18700 0.82812 0.93382 0.93930 1.21325 0.93578 0.98773 1.12483 1.20878 0.94919 0.95512 0.93524 1.19189 0.94782 0.91786 1.10018 1.21315 0.91795 1.01072 0.91032 1.68846 1.12235 1.15239 1.23851 1.23508 0.98239 0.88036 0.98288 1.20101 0.93416 0.92750 0.93970 1.21377 1.13228 1.02897 1.18968 0.92335 1.25825 0.97888 1.00241 0.94515 1.70119 1.36551 1.26168 1.23189 0.85532 0.79250 0.78792 0.78257 1.18790 1.20602 1.20510 1.23821 0.89092 0.99401 0.99610 1.18735 0.91094 0.84840 0.93669 1.86234 1.36877 1.12554 1.87824 1.22960 0.92149 0.85255 1.01970 1.21774 1.01389 0.94871 1.02490 1.20430 0.93407 0.97183 1.16698 0.87949 0.92120 0.91773 0.90624 0.91172 0.82668 0.83030 0.89102 0.94556 0.93609 0.95268 0.95590 0.92969 0.90610 0.92121 0.90219 0.92030 0.93944 0.91860 0.87644 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16 2 C 0.04 0.66 5.46 71.98 0.39 1.05 16 3 O -0.33 -7.90 10.13 -92.39 -0.94 -8.84 16 4 C 0.16 4.27 6.68 22.49 0.15 4.42 16 5 C -0.24 -5.83 9.04 22.38 0.20 -5.63 16 6 C -0.03 -0.80 9.66 22.24 0.21 -0.59 16 7 C -0.16 -5.23 5.48 -19.75 -0.11 -5.33 16 8 C 0.08 2.73 4.70 85.56 0.40 3.13 16 9 N -0.48 -20.64 6.32 -932.58 -5.89 -26.53 16 10 C 0.05 2.43 5.72 83.57 0.48 2.91 16 11 C 0.02 0.89 3.76 -11.20 -0.04 0.85 16 12 C -0.53 -29.72 8.83 25.60 0.23 -29.49 16 13 H 0.06 3.21 7.81 -2.91 -0.02 3.18 16 14 C 0.01 0.82 5.46 84.65 0.46 1.28 16 15 N -0.92 -55.38 13.26 21.45 0.28 -55.09 16 16 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 C 0.01 0.41 7.24 83.57 0.61 1.01 16 21 C 0.16 5.60 6.65 22.49 0.15 5.75 16 22 O -0.32 -11.64 7.49 -92.40 -0.69 -12.33 16 23 C 0.05 1.45 5.46 71.98 0.39 1.84 16 24 C -0.15 -4.08 10.28 71.98 0.74 -3.34 16 25 C -0.26 -7.77 8.97 22.46 0.20 -7.57 16 26 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.95 7.66 -2.39 -0.02 0.93 16 30 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 31 H 0.16 2.66 6.29 -2.91 -0.02 2.65 16 32 H 0.15 3.27 8.03 -2.91 -0.02 3.25 16 33 H 0.09 2.78 7.94 -2.39 -0.02 2.76 16 34 H 0.04 1.41 7.01 -2.39 -0.02 1.39 16 35 H 0.05 2.35 7.09 -2.38 -0.02 2.34 16 36 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.03 1.55 8.11 -2.39 -0.02 1.53 16 38 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.06 2.54 7.87 -2.39 -0.02 2.52 16 41 H 0.08 1.85 7.65 -2.39 -0.02 1.83 16 42 H 0.06 1.69 7.67 -2.38 -0.02 1.67 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.14 3.80 6.30 -2.91 -0.02 3.78 16 Total: -1.00 -68.30 372.27 0.95 -67.36 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.95 Total: 19.95 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 5.21 Total: -30.62 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -5.61 Total: -81.62 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.63 Total: -21.17 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -68.30 0.95 -67.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138977736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.222 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds