Wall clock time and date at job start Tue Mar 31 2020 10:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35896 * 117.00312 * 2 1 4 4 C 1.38663 * 120.02536 * 0.02562 * 3 2 1 5 5 C 1.38614 * 119.88820 * 179.97438 * 4 3 2 6 6 O 1.35899 * 120.02222 * 179.97438 * 5 4 3 7 7 C 1.38791 * 119.94556 * 359.72047 * 5 4 3 8 8 C 1.38148 * 120.05681 * 0.55353 * 7 5 4 9 9 C 1.38197 * 120.10745 * 359.44565 * 8 7 5 10 10 C 1.50710 * 119.97248 * 180.25240 * 9 8 7 11 11 N 1.46897 * 109.47263 * 269.41723 * 10 9 8 12 12 C 1.46897 * 111.00268 * 174.72429 * 11 10 9 13 13 C 1.50693 * 109.47501 * 183.62582 * 12 11 10 14 14 H 1.08005 * 120.00142 * 5.82039 * 13 12 11 15 15 C 1.37881 * 120.00488 * 185.82443 * 13 12 11 16 16 N 1.31516 * 119.99474 * 359.97438 * 15 13 12 17 17 Si 1.86789 * 120.00200 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47875 * 59.99725 * 17 15 13 19 19 H 1.48500 * 109.47144 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47054 * 299.99240 * 17 15 13 21 21 C 1.46910 * 110.99997 * 298.68030 * 11 10 9 22 22 C 1.54267 * 110.02725 * 268.74875 * 21 11 10 23 23 C 1.54968 * 104.15584 * 217.13331 * 22 21 11 24 24 C 1.54890 * 102.77583 * 37.88974 * 23 22 21 25 25 C 1.53871 * 110.03110 * 151.53035 * 21 11 10 26 26 H 1.09003 * 109.47353 * 300.00373 * 1 2 3 27 27 H 1.09000 * 109.47098 * 59.99819 * 1 2 3 28 28 H 1.08994 * 109.47447 * 179.97438 * 1 2 3 29 29 H 1.07992 * 120.05463 * 359.95293 * 4 3 2 30 30 H 0.96700 * 113.99914 * 89.99945 * 6 5 4 31 31 H 1.08007 * 119.97165 * 180.27704 * 7 5 4 32 32 H 1.08002 * 119.94838 * 179.72688 * 8 7 5 33 33 H 1.08996 * 109.46606 * 29.42000 * 10 9 8 34 34 H 1.08998 * 109.47090 * 149.41726 * 10 9 8 35 35 H 1.08999 * 109.46907 * 303.62974 * 12 11 10 36 36 H 1.09003 * 109.46826 * 63.62114 * 12 11 10 37 37 H 0.97001 * 119.99750 * 180.02562 * 16 15 13 38 38 H 1.09000 * 110.01701 * 30.13894 * 21 11 10 39 39 H 1.08996 * 110.48656 * 335.77939 * 22 21 11 40 40 H 1.09001 * 110.48689 * 98.42848 * 22 21 11 41 41 H 1.08998 * 110.72035 * 279.57575 * 23 22 21 42 42 H 1.08999 * 110.92399 * 156.29439 * 23 22 21 43 43 H 1.09002 * 110.48746 * 203.40069 * 24 23 22 44 44 H 1.09005 * 110.59976 * 80.81690 * 24 23 22 45 45 H 1.09003 * 110.03168 * 238.56422 * 25 21 11 46 46 H 1.09001 * 110.03556 * 359.95025 * 25 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2913 2.3741 0.0005 5 6 1.9237 3.6076 0.0011 6 8 1.1867 4.7495 0.0011 7 6 3.3099 3.6756 0.0069 8 6 4.0595 2.5152 0.0007 9 6 3.4315 1.2842 0.0002 10 6 4.2523 0.0202 -0.0009 11 7 4.5067 -0.3973 -1.3861 12 6 5.4089 -1.5558 -1.4296 13 6 5.7169 -1.8992 -2.8642 14 1 5.3633 -1.2606 -3.6603 15 6 6.4501 -3.0286 -3.1608 16 7 6.8811 -3.8059 -2.1914 17 14 6.8325 -3.4537 -4.9390 18 1 7.6099 -2.3491 -5.5560 19 1 7.6286 -4.7063 -4.9883 20 1 5.5634 -3.6436 -5.6864 21 6 3.2489 -0.6829 -2.0894 22 6 2.8861 -2.1747 -1.9385 23 6 2.2733 -2.5563 -3.3097 24 6 3.1497 -1.7618 -4.3096 25 6 3.4162 -0.4202 -3.5963 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2128 2.3192 0.0002 30 1 0.9731 5.0797 0.8845 31 1 3.8030 4.6365 0.0119 32 1 5.1382 2.5701 0.0008 33 1 5.2011 0.2028 0.5036 34 1 3.7084 -0.7667 0.5216 35 1 6.3345 -1.3153 -0.9068 36 1 4.9298 -2.4077 -0.9469 37 1 7.3973 -4.6003 -2.4000 38 1 2.4480 -0.0615 -1.6887 39 1 3.7801 -2.7667 -1.7423 40 1 2.1548 -2.3108 -1.1418 41 1 1.2329 -2.2368 -3.3695 42 1 2.3576 -3.6281 -3.4891 43 1 2.6106 -1.5974 -5.2426 44 1 4.0866 -2.2859 -4.4989 45 1 2.6958 0.3280 -3.9271 46 1 4.4303 -0.0800 -3.8057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139140993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:14 Heat of formation + Delta-G solvation = -27.839055 kcal Electronic energy + Delta-G solvation = -26884.839105 eV Core-core repulsion = 23354.938333 eV Total energy + Delta-G solvation = -3529.900772 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.52387 -38.55895 -38.14406 -36.27401 -34.05922 -32.56653 -30.46446 -30.08846 -27.91958 -27.50142 -27.25266 -26.28857 -23.86775 -22.24524 -21.77754 -21.11598 -19.71828 -18.86866 -18.14451 -16.92911 -16.77402 -16.23515 -15.92600 -15.40367 -14.83960 -14.77295 -14.61420 -14.24288 -14.04304 -13.75120 -13.50198 -13.05679 -12.52714 -12.47837 -12.19915 -12.05309 -11.88337 -11.47562 -11.26441 -11.06138 -10.93052 -10.84918 -10.66068 -10.63219 -10.30540 -10.25790 -10.09606 -10.00633 -9.76833 -9.33179 -9.15367 -8.70063 -8.64502 -8.34511 -7.99577 -6.99179 -5.94975 -3.91873 1.30140 1.48870 3.32630 3.35704 3.40639 3.43131 3.68338 4.15828 4.48691 4.87959 4.98689 5.10963 5.15558 5.16148 5.27465 5.41099 5.44140 5.48509 5.61461 5.66435 5.74138 5.86555 5.88848 6.01867 6.25096 6.31870 6.35167 6.44761 6.49303 6.53612 6.59101 6.70425 6.71713 6.81190 6.81660 6.85928 6.94009 7.15435 7.17104 7.36511 7.39181 7.54779 7.62806 7.70967 7.99826 8.21464 8.35175 8.68797 9.15304 9.69543 11.16502 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019964 B = 0.004648 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.195782 B = 6022.348464 C = 6452.787198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.300 6.300 3 C 0.147 3.853 4 C -0.238 4.238 5 C 0.129 3.871 6 O -0.501 6.501 7 C -0.182 4.182 8 C -0.049 4.049 9 C -0.098 4.098 10 C 0.097 3.903 11 N -0.526 5.526 12 C 0.185 3.815 13 C -0.504 4.504 14 H 0.084 0.916 15 C 0.056 3.944 16 N -0.901 5.901 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.274 1.274 21 C 0.094 3.906 22 C -0.159 4.159 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.107 4.107 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.386 0.614 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.022 0.978 36 H 0.008 0.992 37 H 0.259 0.741 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.037 0.963 44 H 0.088 0.912 45 H 0.033 0.967 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.331 10.865 6.366 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.101 3.899 4 C -0.257 4.257 5 C 0.085 3.915 6 O -0.310 6.310 7 C -0.201 4.201 8 C -0.068 4.068 9 C -0.100 4.100 10 C -0.031 4.031 11 N -0.250 5.250 12 C 0.061 3.939 13 C -0.543 4.543 14 H 0.102 0.898 15 C -0.144 4.144 16 N -0.541 5.541 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.200 1.200 21 C -0.015 4.015 22 C -0.197 4.197 23 C -0.148 4.148 24 C -0.163 4.163 25 C -0.145 4.145 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.147 0.853 30 H 0.242 0.758 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.026 0.974 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.107 0.893 45 H 0.052 0.948 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.861 10.830 5.550 16.993 hybrid contribution -0.550 -0.778 -0.085 0.956 sum -12.411 10.052 5.465 16.880 Atomic orbital electron populations 1.23030 0.79054 1.03877 1.00944 1.86267 1.20758 1.26272 1.88002 1.18627 0.91811 0.83864 0.95636 1.21339 1.00263 0.91903 1.12213 1.18110 0.89376 0.84739 0.99282 1.84819 1.73134 1.39838 1.33250 1.21274 0.92866 0.99170 1.06755 1.20788 1.00207 0.90232 0.95525 1.19461 0.90173 0.96649 1.03668 1.20855 0.97398 0.92012 0.92867 1.62534 1.13107 1.39095 1.10256 1.19898 0.90302 0.85904 0.97823 1.21625 1.32091 1.07833 0.92712 0.89838 1.24929 0.96309 0.96590 0.96618 1.69949 1.37752 1.15132 1.31291 0.86827 0.78515 0.77694 0.85917 1.20265 1.21611 1.19971 1.22191 0.90872 0.94409 0.93983 1.23213 1.01939 0.99153 0.95422 1.22241 0.97111 0.98932 0.96551 1.22537 1.00744 0.96946 0.96059 1.22253 1.01641 0.95795 0.94774 0.93040 0.92752 0.88303 0.85300 0.75816 0.85605 0.84645 0.90767 0.94456 0.95996 0.97422 0.93153 0.91132 0.87009 0.94199 0.93880 0.92981 0.94381 0.89325 0.94813 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.30 -4.45 7.39 -19.41 -0.14 -4.60 16 3 C 0.15 2.21 5.37 -39.24 -0.21 2.00 16 4 C -0.24 -3.14 8.97 -39.29 -0.35 -3.50 16 5 C 0.13 1.66 6.70 -39.24 -0.26 1.40 16 6 O -0.50 -5.47 13.50 -19.42 -0.26 -5.73 16 7 C -0.18 -2.34 9.98 -39.41 -0.39 -2.74 16 8 C -0.05 -0.70 9.69 -39.63 -0.38 -1.08 16 9 C -0.10 -1.58 4.91 -104.44 -0.51 -2.10 16 10 C 0.10 1.78 4.97 -4.97 -0.02 1.75 16 11 N -0.53 -11.19 4.41 -228.18 -1.01 -12.19 16 12 C 0.19 4.62 4.20 -4.98 -0.02 4.60 16 13 C -0.50 -13.24 5.80 -34.44 -0.20 -13.44 16 14 H 0.08 2.16 3.27 -52.48 -0.17 1.99 16 15 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -26.04 13.29 55.43 0.74 -25.31 16 17 Si 0.88 21.24 28.43 -169.99 -4.83 16.40 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.27 -6.42 6.98 56.52 0.39 -6.03 16 21 C 0.09 1.89 2.44 -66.59 -0.16 1.73 16 22 C -0.16 -3.27 5.75 -25.03 -0.14 -3.42 16 23 C -0.11 -2.10 6.91 -24.70 -0.17 -2.27 16 24 C -0.13 -2.52 6.18 -25.07 -0.15 -2.67 16 25 C -0.11 -2.17 5.64 -25.62 -0.14 -2.31 16 26 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 27 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.13 1.45 6.30 -52.49 -0.33 1.12 16 30 H 0.39 2.20 9.06 45.56 0.41 2.61 16 31 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 34 H 0.04 0.72 7.54 -51.93 -0.39 0.32 16 35 H 0.02 0.59 8.11 -51.93 -0.42 0.17 16 36 H 0.01 0.22 5.79 -51.93 -0.30 -0.08 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.07 1.36 3.58 -51.93 -0.19 1.17 16 39 H 0.11 2.72 4.15 -51.93 -0.22 2.50 16 40 H 0.04 0.77 7.96 -51.93 -0.41 0.35 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.01 4.68 -51.93 -0.24 1.77 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.92 5.78 -51.93 -0.30 1.62 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -30.44 345.71 -8.42 -38.86 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.87 Total: 6.71 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -2.24 Total: -19.35 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.27 Total: -37.50 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.41 Total: -10.33 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.83 Total: 16.40 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.44 -8.42 -38.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139140993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.017 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds