Wall clock time and date at job start Tue Mar 31 2020 10:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35896 * 117.00312 * 2 1 4 4 C 1.38663 * 120.02536 * 0.02562 * 3 2 1 5 5 C 1.38614 * 119.88820 * 179.97438 * 4 3 2 6 6 O 1.35899 * 120.02222 * 179.97438 * 5 4 3 7 7 C 1.38791 * 119.94556 * 359.72047 * 5 4 3 8 8 C 1.38148 * 120.05681 * 0.55353 * 7 5 4 9 9 C 1.38197 * 120.10745 * 359.44565 * 8 7 5 10 10 C 1.50710 * 119.97248 * 180.25240 * 9 8 7 11 11 N 1.46897 * 109.47263 * 269.41723 * 10 9 8 12 12 C 1.46897 * 111.00268 * 174.72429 * 11 10 9 13 13 C 1.50693 * 109.47501 * 183.62582 * 12 11 10 14 14 H 1.08005 * 120.00142 * 5.82039 * 13 12 11 15 15 C 1.37881 * 120.00488 * 185.82443 * 13 12 11 16 16 N 1.31516 * 119.99474 * 359.97438 * 15 13 12 17 17 Si 1.86789 * 120.00200 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47875 * 59.99725 * 17 15 13 19 19 H 1.48500 * 109.47144 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47054 * 299.99240 * 17 15 13 21 21 C 1.46910 * 110.99997 * 298.68030 * 11 10 9 22 22 C 1.54267 * 110.02725 * 268.74875 * 21 11 10 23 23 C 1.54968 * 104.15584 * 217.13331 * 22 21 11 24 24 C 1.54890 * 102.77583 * 37.88974 * 23 22 21 25 25 C 1.53871 * 110.03110 * 151.53035 * 21 11 10 26 26 H 1.09003 * 109.47353 * 300.00373 * 1 2 3 27 27 H 1.09000 * 109.47098 * 59.99819 * 1 2 3 28 28 H 1.08994 * 109.47447 * 179.97438 * 1 2 3 29 29 H 1.07992 * 120.05463 * 359.95293 * 4 3 2 30 30 H 0.96700 * 113.99914 * 89.99945 * 6 5 4 31 31 H 1.08007 * 119.97165 * 180.27704 * 7 5 4 32 32 H 1.08002 * 119.94838 * 179.72688 * 8 7 5 33 33 H 1.08996 * 109.46606 * 29.42000 * 10 9 8 34 34 H 1.08998 * 109.47090 * 149.41726 * 10 9 8 35 35 H 1.08999 * 109.46907 * 303.62974 * 12 11 10 36 36 H 1.09003 * 109.46826 * 63.62114 * 12 11 10 37 37 H 0.97001 * 119.99750 * 180.02562 * 16 15 13 38 38 H 1.09000 * 110.01701 * 30.13894 * 21 11 10 39 39 H 1.08996 * 110.48656 * 335.77939 * 22 21 11 40 40 H 1.09001 * 110.48689 * 98.42848 * 22 21 11 41 41 H 1.08998 * 110.72035 * 279.57575 * 23 22 21 42 42 H 1.08999 * 110.92399 * 156.29439 * 23 22 21 43 43 H 1.09002 * 110.48746 * 203.40069 * 24 23 22 44 44 H 1.09005 * 110.59976 * 80.81690 * 24 23 22 45 45 H 1.09003 * 110.03168 * 238.56422 * 25 21 11 46 46 H 1.09001 * 110.03556 * 359.95025 * 25 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2913 2.3741 0.0005 5 6 1.9237 3.6076 0.0011 6 8 1.1867 4.7495 0.0011 7 6 3.3099 3.6756 0.0069 8 6 4.0595 2.5152 0.0007 9 6 3.4315 1.2842 0.0002 10 6 4.2523 0.0202 -0.0009 11 7 4.5067 -0.3973 -1.3861 12 6 5.4089 -1.5558 -1.4296 13 6 5.7169 -1.8992 -2.8642 14 1 5.3633 -1.2606 -3.6603 15 6 6.4501 -3.0286 -3.1608 16 7 6.8811 -3.8059 -2.1914 17 14 6.8325 -3.4537 -4.9390 18 1 7.6099 -2.3491 -5.5560 19 1 7.6286 -4.7063 -4.9883 20 1 5.5634 -3.6436 -5.6864 21 6 3.2489 -0.6829 -2.0894 22 6 2.8861 -2.1747 -1.9385 23 6 2.2733 -2.5563 -3.3097 24 6 3.1497 -1.7618 -4.3096 25 6 3.4162 -0.4202 -3.5963 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2128 2.3192 0.0002 30 1 0.9731 5.0797 0.8845 31 1 3.8030 4.6365 0.0119 32 1 5.1382 2.5701 0.0008 33 1 5.2011 0.2028 0.5036 34 1 3.7084 -0.7667 0.5216 35 1 6.3345 -1.3153 -0.9068 36 1 4.9298 -2.4077 -0.9469 37 1 7.3973 -4.6003 -2.4000 38 1 2.4480 -0.0615 -1.6887 39 1 3.7801 -2.7667 -1.7423 40 1 2.1548 -2.3108 -1.1418 41 1 1.2329 -2.2368 -3.3695 42 1 2.3576 -3.6281 -3.4891 43 1 2.6106 -1.5974 -5.2426 44 1 4.0866 -2.2859 -4.4989 45 1 2.6958 0.3280 -3.9271 46 1 4.4303 -0.0800 -3.8057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139140993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:13 Heat of formation + Delta-G solvation = -48.252339 kcal Electronic energy + Delta-G solvation = -26885.724291 eV Core-core repulsion = 23354.938333 eV Total energy + Delta-G solvation = -3530.785958 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64153 -40.01949 -39.20306 -37.33612 -35.61186 -34.56512 -31.76422 -31.13922 -29.55599 -29.11989 -28.55099 -27.61785 -25.45216 -23.62631 -23.22684 -22.33583 -21.31311 -19.90769 -19.67844 -18.72295 -17.84446 -17.38773 -17.12467 -16.78396 -16.45931 -16.22929 -15.90799 -15.63809 -15.25642 -15.07031 -14.74812 -14.70485 -14.20641 -13.97568 -13.44402 -13.39755 -13.16141 -12.92639 -12.78240 -12.66168 -12.55477 -12.17459 -12.05268 -11.98023 -11.85115 -11.69538 -11.58499 -11.56712 -11.53135 -10.99568 -10.95973 -10.55224 -10.45927 -9.71352 -9.09633 -8.72890 -8.06441 -6.08483 0.25361 0.45178 1.43006 1.44042 1.50317 2.37469 2.46454 2.64842 3.26016 3.28402 3.54664 3.88356 3.95911 4.02638 4.07113 4.17515 4.25984 4.33899 4.40360 4.42468 4.58221 4.69879 4.73467 4.75215 4.83635 4.89625 4.93958 4.96593 5.01112 5.05331 5.17853 5.19088 5.24264 5.27994 5.37278 5.40122 5.44207 5.56384 5.65583 5.75852 5.77904 5.86835 5.94920 6.25010 6.41602 6.54299 6.83298 6.88913 7.07271 7.57254 9.05434 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019964 B = 0.004648 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.195782 B = 6022.348464 C = 6452.787198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.141 3.859 4 C -0.238 4.238 5 C 0.140 3.860 6 O -0.505 6.505 7 C -0.184 4.184 8 C -0.052 4.052 9 C -0.127 4.127 10 C 0.103 3.897 11 N -0.530 5.530 12 C 0.201 3.799 13 C -0.499 4.499 14 H 0.091 0.909 15 C 0.007 3.993 16 N -0.939 5.939 17 Si 0.938 3.062 18 H -0.272 1.272 19 H -0.293 1.293 20 H -0.261 1.261 21 C 0.097 3.903 22 C -0.155 4.155 23 C -0.105 4.105 24 C -0.126 4.126 25 C -0.106 4.106 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.151 0.849 30 H 0.412 0.588 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.069 0.931 34 H 0.023 0.977 35 H -0.009 1.009 36 H -0.016 1.016 37 H 0.257 0.743 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.895 12.932 5.436 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.095 3.905 4 C -0.257 4.257 5 C 0.095 3.905 6 O -0.318 6.318 7 C -0.202 4.202 8 C -0.071 4.071 9 C -0.128 4.128 10 C -0.025 4.025 11 N -0.253 5.253 12 C 0.076 3.924 13 C -0.537 4.537 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.581 5.581 17 Si 0.765 3.235 18 H -0.198 1.198 19 H -0.219 1.219 20 H -0.186 1.186 21 C -0.011 4.011 22 C -0.193 4.193 23 C -0.143 4.143 24 C -0.164 4.164 25 C -0.144 4.144 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.168 0.832 30 H 0.272 0.728 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.009 0.991 36 H 0.001 0.999 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.454 12.928 4.633 19.937 hybrid contribution 0.144 -1.300 0.301 1.342 sum -14.310 11.628 4.934 19.087 Atomic orbital electron populations 1.23310 0.76882 1.05183 1.02299 1.86219 1.23113 1.26567 1.87997 1.18685 0.91473 0.84655 0.95673 1.21522 1.01263 0.91280 1.11652 1.18193 0.89464 0.85284 0.97516 1.84756 1.72660 1.38892 1.35534 1.21468 0.93151 0.99381 1.06219 1.20880 1.00631 0.90266 0.95336 1.19284 0.90778 0.95760 1.06947 1.20756 0.97631 0.93171 0.90937 1.62448 1.13636 1.36868 1.12384 1.19561 0.89686 0.86439 0.96755 1.21908 1.30962 1.07451 0.93348 0.89186 1.25650 0.96465 0.96720 1.00157 1.70092 1.39023 1.15709 1.33292 0.85918 0.78677 0.77231 0.81721 1.19753 1.21901 1.18607 1.22248 0.90575 0.94309 0.93990 1.23051 1.00468 0.98841 0.96955 1.22239 0.98483 0.98700 0.94848 1.22491 0.99875 0.96467 0.97540 1.22226 1.00823 0.96502 0.94805 0.91102 0.91881 0.87173 0.83163 0.72831 0.83535 0.84396 0.91233 0.95875 0.99116 0.99872 0.93459 0.89472 0.91252 0.93280 0.90767 0.93360 0.91683 0.92366 0.92578 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -9.18 7.39 -92.38 -0.68 -9.87 16 3 C 0.14 4.03 5.37 22.49 0.12 4.15 16 4 C -0.24 -5.57 8.97 22.46 0.20 -5.37 16 5 C 0.14 3.15 6.70 22.49 0.15 3.30 16 6 O -0.50 -9.00 13.50 -92.41 -1.25 -10.25 16 7 C -0.18 -4.28 9.98 22.38 0.22 -4.05 16 8 C -0.05 -1.45 9.69 22.24 0.22 -1.24 16 9 C -0.13 -4.03 4.91 -19.75 -0.10 -4.13 16 10 C 0.10 3.93 4.97 85.56 0.43 4.35 16 11 N -0.53 -23.22 4.41 -875.82 -3.86 -27.08 16 12 C 0.20 10.60 4.20 85.56 0.36 10.96 16 13 C -0.50 -27.00 5.80 25.60 0.15 -26.85 16 14 H 0.09 4.72 3.27 -2.91 -0.01 4.71 16 15 C 0.01 0.38 5.46 84.66 0.46 0.84 16 16 N -0.94 -56.49 13.29 21.45 0.28 -56.21 16 17 Si 0.94 44.25 28.43 68.60 1.95 46.20 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.26 -11.69 6.98 99.48 0.69 -10.99 16 21 C 0.10 3.87 2.44 45.64 0.11 3.98 16 22 C -0.15 -6.39 5.75 31.70 0.18 -6.21 16 23 C -0.10 -3.82 6.91 31.91 0.22 -3.60 16 24 C -0.13 -4.86 6.18 31.67 0.20 -4.66 16 25 C -0.11 -4.15 5.64 31.32 0.18 -3.98 16 26 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 27 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.15 2.79 6.30 -2.91 -0.02 2.77 16 30 H 0.41 2.93 9.06 -74.06 -0.67 2.26 16 31 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 32 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 33 H 0.07 2.62 8.04 -2.39 -0.02 2.60 16 34 H 0.02 0.93 7.54 -2.39 -0.02 0.92 16 35 H -0.01 -0.53 8.11 -2.39 -0.02 -0.55 16 36 H -0.02 -0.92 5.79 -2.39 -0.01 -0.94 16 37 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.09 3.24 3.58 -2.39 -0.01 3.23 16 39 H 0.07 3.52 4.15 -2.39 -0.01 3.51 16 40 H 0.05 1.88 7.96 -2.39 -0.02 1.86 16 41 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.06 2.60 4.68 -2.38 -0.01 2.59 16 45 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.06 2.75 5.78 -2.39 -0.01 2.74 16 Total: -1.00 -67.40 345.71 0.98 -66.42 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.33 Total: 21.85 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 4.21 Total: -31.07 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -3.58 Total: -83.29 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.93 Total: -20.11 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.95 Total: 46.20 kcal Total: -67.40 0.98 -66.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139140993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.172 kcal (2) G-P(sol) polarization free energy of solvation -67.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds