Wall clock time and date at job start Tue Mar 31 2020 10:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38559 * 120.07317 * 359.72220 * 3 2 1 5 5 C 1.38244 * 119.99721 * 179.74281 * 4 3 2 6 6 C 1.38253 * 120.14684 * 0.51068 * 5 4 3 7 7 C 1.50704 * 119.92839 * 179.74163 * 6 5 4 8 8 N 1.46894 * 109.47317 * 270.02776 * 7 6 5 9 9 C 1.46905 * 110.99931 * 293.95200 * 8 7 6 10 10 C 1.46899 * 111.00296 * 170.00107 * 8 7 6 11 11 C 1.50699 * 109.47413 * 189.99964 * 10 8 7 12 12 H 1.08010 * 119.99768 * 359.97438 * 11 10 8 13 13 C 1.37873 * 120.00361 * 180.02562 * 11 10 8 14 14 N 1.31509 * 120.00399 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99795 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46880 * 90.00389 * 15 13 11 17 17 H 1.48497 * 109.47396 * 210.00517 * 15 13 11 18 18 H 1.48500 * 109.46961 * 330.00475 * 15 13 11 19 19 C 1.38239 * 120.14479 * 359.76861 * 6 5 4 20 20 C 1.38566 * 120.00142 * 359.97341 * 19 6 5 21 21 O 1.35995 * 120.07462 * 180.02562 * 20 19 6 22 22 C 1.42898 * 116.99958 * 359.97438 * 21 20 19 23 23 C 1.53003 * 109.47261 * 179.97438 * 22 21 20 24 24 C 1.52998 * 117.49746 * 243.62359 * 23 22 21 25 25 C 1.52999 * 117.49828 * 175.00070 * 23 22 21 26 26 H 1.09001 * 109.46558 * 60.00239 * 1 2 3 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00191 * 1 2 3 29 29 H 1.07996 * 120.00532 * 359.97438 * 4 3 2 30 30 H 1.08006 * 119.92969 * 180.25602 * 5 4 3 31 31 H 1.09004 * 109.46899 * 30.02519 * 7 6 5 32 32 H 1.08998 * 109.46930 * 150.02280 * 7 6 5 33 33 H 1.08999 * 109.46893 * 60.00066 * 9 8 7 34 34 H 1.08997 * 109.47643 * 179.97438 * 9 8 7 35 35 H 1.09006 * 109.46829 * 300.00354 * 9 8 7 36 36 H 1.08998 * 109.46660 * 309.99401 * 10 8 7 37 37 H 1.08997 * 109.47368 * 69.99525 * 10 8 7 38 38 H 0.97004 * 120.00061 * 179.97438 * 14 13 11 39 39 H 1.07999 * 120.00021 * 179.97438 * 19 6 5 40 40 H 1.09006 * 109.47532 * 300.00110 * 22 21 20 41 41 H 1.09006 * 109.47273 * 59.99792 * 22 21 20 42 42 H 1.09001 * 115.54613 * 29.32885 * 23 22 21 43 43 H 1.08992 * 117.50228 * 359.97438 * 24 23 22 44 44 H 1.08998 * 117.49705 * 145.02357 * 24 23 22 45 45 H 1.08996 * 117.49600 * 214.98040 * 25 23 22 46 46 H 1.08997 * 117.49968 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0058 5 6 1.9224 3.6057 -0.0004 6 6 3.3029 3.6798 0.0001 7 6 3.9837 5.0244 0.0001 8 7 4.2048 5.4613 -1.3848 9 6 5.1652 4.5834 -2.0668 10 6 4.6468 6.8614 -1.4310 11 6 4.6270 7.3478 -2.8572 12 1 4.3174 6.6830 -3.6502 13 6 5.0050 8.6409 -3.1500 14 7 4.9882 9.0652 -4.3946 15 14 5.5412 9.7904 -1.7786 16 1 7.0077 9.6711 -1.5777 17 1 5.2040 11.1894 -2.1450 18 1 4.8381 9.4245 -0.5228 19 6 4.0602 2.5234 0.0001 20 6 3.4359 1.2863 0.0001 21 8 4.1795 0.1477 0.0006 22 6 5.6003 0.3007 0.0005 23 6 6.2619 -1.0789 0.0018 24 6 7.1109 -1.4541 1.2180 25 6 7.7864 -1.1314 -0.1164 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2147 2.3196 -0.0108 30 1 1.3342 4.5115 -0.0008 31 1 3.3537 5.7505 0.5139 32 1 4.9417 4.9465 0.5140 33 1 4.7800 3.5638 -2.0793 34 1 5.3102 4.9290 -3.0903 35 1 6.1175 4.6056 -1.5369 36 1 3.9759 7.4742 -0.8289 37 1 5.6599 6.9359 -1.0358 38 1 5.2539 9.9751 -4.6005 39 1 5.1385 2.5840 0.0001 40 1 5.9066 0.8501 -0.8897 41 1 5.9066 0.8509 0.8903 42 1 5.6920 -1.8739 -0.4793 43 1 7.1986 -0.7180 2.0170 44 1 7.0998 -2.4962 1.5374 45 1 8.2196 -1.9612 -0.6748 46 1 8.3180 -0.1832 -0.1954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140486799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:25 Heat of formation + Delta-G solvation = -33.603835 kcal Electronic energy + Delta-G solvation = -24855.556421 eV Core-core repulsion = 21325.405670 eV Total energy + Delta-G solvation = -3530.150751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61570 -39.68203 -39.13240 -37.88637 -37.09755 -34.64618 -32.11613 -31.31318 -29.72456 -28.95978 -28.28859 -27.29021 -25.21848 -23.43079 -23.25099 -22.71180 -21.82064 -21.32432 -19.36437 -18.96313 -18.24778 -17.63947 -17.16656 -16.65966 -16.48222 -16.20025 -16.04260 -15.86053 -15.60089 -15.49102 -15.20761 -14.62070 -14.49557 -14.22037 -13.85019 -13.69372 -13.37896 -13.05724 -12.97954 -12.72935 -12.58184 -12.47874 -12.43527 -12.31236 -12.15042 -12.01535 -11.87485 -11.77911 -11.73094 -11.42635 -11.39138 -10.91749 -10.78256 -9.68489 -9.05294 -8.73171 -8.26976 -6.30707 0.28871 0.44114 1.35991 1.38026 1.48914 2.09799 2.35718 2.37989 2.65397 2.85862 3.06285 3.43165 3.68021 3.83622 3.84684 3.89832 3.97170 4.12013 4.13942 4.19487 4.39060 4.40421 4.44070 4.45297 4.48369 4.53855 4.55141 4.62772 4.69020 4.75735 4.76405 4.79891 4.92585 4.98115 5.00510 5.11534 5.17780 5.19675 5.21594 5.30364 5.53053 5.67810 5.70757 5.98340 6.12352 6.33561 6.62059 6.65153 6.75675 7.32864 8.89780 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.003467 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.929701 B = 8073.813128 C = 9636.961117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.081 3.919 4 C -0.167 4.167 5 C -0.102 4.102 6 C -0.075 4.075 7 C 0.094 3.906 8 N -0.541 5.541 9 C 0.042 3.958 10 C 0.171 3.829 11 C -0.516 4.516 12 H 0.035 0.965 13 C 0.007 3.993 14 N -0.950 5.950 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.245 1.245 19 C -0.165 4.165 20 C 0.084 3.916 21 O -0.318 6.318 22 C 0.086 3.914 23 C -0.172 4.172 24 C -0.172 4.172 25 C -0.161 4.161 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.160 0.840 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.023 0.977 36 H 0.035 0.965 37 H -0.011 1.011 38 H 0.267 0.733 39 H 0.138 0.862 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -20.748 14.905 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.036 3.964 4 C -0.185 4.185 5 C -0.121 4.121 6 C -0.076 4.076 7 C -0.034 4.034 8 N -0.265 5.265 9 C -0.106 4.106 10 C 0.044 3.956 11 C -0.555 4.555 12 H 0.054 0.946 13 C -0.190 4.190 14 N -0.590 5.590 15 Si 0.772 3.228 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.169 1.169 19 C -0.184 4.184 20 C 0.039 3.961 21 O -0.233 6.233 22 C 0.011 3.989 23 C -0.190 4.190 24 C -0.209 4.209 25 C -0.198 4.198 26 H 0.080 0.920 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.177 0.823 30 H 0.155 0.845 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.007 0.993 38 H 0.076 0.924 39 H 0.156 0.844 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.690 -21.022 14.554 25.709 hybrid contribution 0.924 1.154 0.174 1.488 sum -1.766 -19.868 14.727 24.794 Atomic orbital electron populations 1.23341 0.76647 1.05437 1.02233 1.86120 1.23163 1.25919 1.89239 1.18436 0.89227 0.85848 1.02899 1.21269 1.01048 0.90535 1.05685 1.20955 0.93739 0.97885 0.99502 1.19537 0.94040 0.93818 1.00166 1.21064 0.99039 0.93632 0.89628 1.61849 1.47218 1.02950 1.14526 1.22193 0.92948 0.96571 0.98872 1.19981 0.93458 0.86369 0.95771 1.21262 1.43739 0.97508 0.92964 0.94634 1.25863 0.95313 0.99797 0.98049 1.70055 1.50208 1.18328 1.20447 0.85698 0.79282 0.77771 0.80080 1.19345 1.20787 1.16879 1.21006 1.00499 0.90418 1.06519 1.18316 0.88674 0.85980 1.03164 1.86091 1.19359 1.28594 1.89255 1.22444 0.77540 0.97267 1.01603 1.22055 0.94173 0.97108 1.05645 1.23186 1.02674 1.03454 0.91564 1.23096 0.92011 1.04345 1.00335 0.92007 0.86456 0.91443 0.82261 0.84538 0.89557 0.93900 0.91362 0.93488 0.95829 0.94730 0.99312 0.92444 0.84422 0.91770 0.91351 0.87294 0.88267 0.87449 0.86976 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.53 10.28 -79.62 -0.82 -9.35 16 3 C 0.08 2.26 6.70 22.57 0.15 2.41 16 4 C -0.17 -4.10 9.04 22.35 0.20 -3.90 16 5 C -0.10 -2.80 9.69 22.27 0.22 -2.58 16 6 C -0.07 -2.23 4.88 -19.86 -0.10 -2.33 16 7 C 0.09 3.05 5.11 85.56 0.44 3.49 16 8 N -0.54 -22.48 4.74 -931.65 -4.42 -26.90 16 9 C 0.04 1.66 8.95 127.69 1.14 2.81 16 10 C 0.17 8.13 3.79 85.56 0.32 8.45 16 11 C -0.52 -29.99 9.01 25.60 0.23 -29.76 16 12 H 0.04 2.32 7.37 -2.91 -0.02 2.30 16 13 C 0.01 0.40 5.47 84.65 0.46 0.86 16 14 N -0.95 -59.63 13.96 21.44 0.30 -59.33 16 15 Si 0.95 43.60 27.47 68.60 1.88 45.49 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.25 -10.35 6.54 99.48 0.65 -9.70 16 19 C -0.17 -4.66 6.95 22.35 0.16 -4.51 16 20 C 0.08 2.45 6.70 22.57 0.15 2.60 16 21 O -0.32 -9.01 9.92 -79.63 -0.79 -9.80 16 22 C 0.09 1.88 5.02 71.98 0.36 2.25 16 23 C -0.17 -3.12 6.06 -10.79 -0.07 -3.19 16 24 C -0.17 -2.46 10.18 30.59 0.31 -2.15 16 25 C -0.16 -2.23 10.25 30.59 0.31 -1.92 16 26 H 0.06 0.87 7.65 -2.39 -0.02 0.85 16 27 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 0.85 7.68 -2.39 -0.02 0.83 16 29 H 0.16 2.89 6.30 -2.91 -0.02 2.87 16 30 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.09 2.66 7.87 -2.39 -0.02 2.64 16 32 H 0.04 1.30 8.06 -2.39 -0.02 1.28 16 33 H 0.07 2.40 6.16 -2.39 -0.01 2.39 16 34 H 0.05 2.13 6.76 -2.39 -0.02 2.11 16 35 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.03 1.61 6.99 -2.39 -0.02 1.59 16 37 H -0.01 -0.50 7.55 -2.39 -0.02 -0.52 16 38 H 0.27 15.58 8.31 -92.71 -0.77 14.80 16 39 H 0.14 3.53 6.27 -2.91 -0.02 3.51 16 40 H 0.06 1.40 7.66 -2.38 -0.02 1.38 16 41 H 0.07 1.36 7.39 -2.38 -0.02 1.34 16 42 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.10 1.35 8.03 -2.39 -0.02 1.33 16 44 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -71.16 371.72 2.47 -68.70 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.90 Total: 17.27 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 5.41 Total: -26.07 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -4.12 Total: -86.23 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -1.61 Total: -19.15 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Total: -71.16 2.47 -68.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140486799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.092 kcal (2) G-P(sol) polarization free energy of solvation -71.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds