Wall clock time and date at job start Tue Mar 31 2020 10:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35993 * 116.99997 * 2 1 4 4 C 1.38559 * 120.07636 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.00381 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.14178 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.92589 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47109 * 89.99881 * 7 6 5 9 9 C 1.46500 * 119.99812 * 269.99737 * 8 7 6 10 10 C 1.36931 * 120.00301 * 90.00219 * 8 7 6 11 11 H 1.08004 * 119.99911 * 22.99312 * 10 8 7 12 12 C 1.38805 * 120.00479 * 202.99450 * 10 8 7 13 13 N 1.31625 * 119.99953 * 18.34353 * 12 10 8 14 14 Si 1.86799 * 120.00249 * 198.35172 * 12 10 8 15 15 H 1.48498 * 109.47464 * 94.98878 * 14 12 10 16 16 H 1.48505 * 109.47243 * 214.98690 * 14 12 10 17 17 H 1.48493 * 109.47152 * 334.98295 * 14 12 10 18 18 C 1.38249 * 120.14847 * 359.67587 * 6 5 4 19 19 C 1.38563 * 119.99668 * 0.59907 * 18 6 5 20 20 O 1.35995 * 120.07316 * 179.69651 * 19 18 6 21 21 C 1.42894 * 116.99864 * 5.77425 * 20 19 18 22 22 C 1.54275 * 110.03087 * 270.69815 * 21 20 19 23 23 C 1.54885 * 104.19736 * 217.10572 * 22 21 20 24 24 C 1.54896 * 102.74728 * 37.94039 * 23 22 21 25 25 C 1.53870 * 110.03348 * 153.53493 * 21 20 19 26 26 H 1.08997 * 109.47435 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47049 * 300.00101 * 1 2 3 28 28 H 1.09004 * 109.46722 * 60.00018 * 1 2 3 29 29 H 1.08004 * 119.99947 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.92934 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47341 * 209.99804 * 7 6 5 32 32 H 1.09003 * 109.47159 * 329.99954 * 7 6 5 33 33 H 1.09003 * 109.47061 * 95.14892 * 9 8 7 34 34 H 1.08998 * 109.47564 * 215.14452 * 9 8 7 35 35 H 1.08997 * 109.47367 * 335.14756 * 9 8 7 36 36 H 0.97002 * 120.00170 * 180.02562 * 13 12 10 37 37 H 1.08001 * 120.00061 * 180.32702 * 18 6 5 38 38 H 1.08998 * 110.02200 * 32.13975 * 21 20 19 39 39 H 1.09009 * 110.48383 * 335.78272 * 22 21 20 40 40 H 1.09000 * 110.48554 * 98.42597 * 22 21 20 41 41 H 1.09004 * 110.75826 * 279.63151 * 23 22 21 42 42 H 1.08999 * 110.75612 * 156.25116 * 23 22 21 43 43 H 1.09001 * 110.48714 * 203.37480 * 24 23 22 44 44 H 1.09005 * 110.48573 * 80.73829 * 24 23 22 45 45 H 1.09009 * 110.03279 * 238.56368 * 25 21 20 46 46 H 1.08994 * 110.03319 * 359.94424 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3748 0.0005 5 6 1.9226 3.6057 0.0011 6 6 3.3031 3.6798 0.0005 7 6 3.9839 5.0242 0.0005 8 7 4.2050 5.4596 1.3817 9 6 3.1837 6.2505 2.0728 10 6 5.3663 5.1274 2.0268 11 1 6.2514 4.8877 1.4562 12 6 5.4061 5.0988 3.4140 13 7 4.2868 5.0298 4.1032 14 14 7.0480 5.1582 4.3028 15 1 7.3583 6.5616 4.6761 16 1 6.9775 4.3239 5.5293 17 1 8.1134 4.6363 3.4098 18 6 4.0605 2.5232 0.0062 19 6 3.4361 1.2862 -0.0001 20 8 4.1796 0.1475 -0.0007 21 6 5.5944 0.2965 0.1334 22 6 6.2434 0.4534 -1.2574 23 6 7.5814 -0.3181 -1.1414 24 6 7.1971 -1.5398 -0.2703 25 6 6.2008 -0.9708 0.7609 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.2147 2.3197 0.0005 30 1 1.3344 4.5115 0.0019 31 1 4.9418 4.9464 -0.5136 32 1 3.3538 5.7505 -0.5129 33 1 2.5477 5.5886 2.6607 34 1 3.6669 6.9707 2.7330 35 1 2.5765 6.7806 1.3391 36 1 4.3145 5.0102 5.0726 37 1 5.1387 2.5838 0.0111 38 1 5.8213 1.1648 0.7521 39 1 5.6114 0.0078 -2.0257 40 1 6.4273 1.5053 -1.4761 41 1 8.3360 0.2900 -0.6424 42 1 7.9291 -0.6382 -2.1236 43 1 8.0770 -1.9427 0.2313 44 1 6.7191 -2.3074 -0.8792 45 1 6.7227 -0.7175 1.6838 46 1 5.4158 -1.6991 0.9641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141520958.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:35 Heat of formation + Delta-G solvation = -34.137277 kcal Electronic energy + Delta-G solvation = -26000.255312 eV Core-core repulsion = 22470.081429 eV Total energy + Delta-G solvation = -3530.173883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.20434 -38.71606 -37.23011 -36.09207 -34.90888 -31.60270 -29.85183 -29.68833 -28.66927 -27.69583 -27.22043 -25.95645 -25.07024 -22.30092 -21.76020 -20.74903 -20.29205 -19.82214 -18.11477 -16.89462 -16.66681 -16.06488 -15.57838 -15.40338 -14.99504 -14.77101 -14.28877 -13.87919 -13.83743 -13.62181 -13.45944 -13.31790 -13.27785 -12.48740 -12.21117 -11.94907 -11.70410 -11.67256 -11.31793 -11.13217 -11.06037 -10.96211 -10.87556 -10.74774 -10.69709 -10.62825 -10.57618 -10.29094 -10.24273 -10.14393 -9.98729 -9.83441 -8.56291 -8.06423 -7.22086 -6.76616 -5.75565 -3.18636 1.91061 2.06173 3.36222 3.43033 3.44524 3.60515 3.65345 4.29886 4.52040 4.59486 4.62960 4.94033 5.18144 5.30279 5.33127 5.36239 5.39376 5.47686 5.50616 5.55140 5.60343 5.64592 5.67039 5.71599 5.73188 5.87018 5.88134 5.92107 6.03557 6.08751 6.14079 6.21154 6.25227 6.31950 6.44152 6.60021 6.71120 6.76614 6.89153 7.27859 7.30180 7.38099 7.53315 7.69743 7.78108 8.10262 8.36684 9.19228 9.83376 10.33446 11.28731 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.006012 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.911125 B = 4656.563225 C = 6532.026741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.314 6.314 3 C 0.073 3.927 4 C -0.173 4.173 5 C -0.114 4.114 6 C -0.072 4.072 7 C 0.182 3.818 8 N -0.588 5.588 9 C 0.159 3.841 10 C -0.255 4.255 11 H 0.068 0.932 12 C 0.005 3.995 13 N -0.897 5.897 14 Si 0.899 3.101 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.278 1.278 18 C -0.150 4.150 19 C 0.099 3.901 20 O -0.303 6.303 21 C 0.077 3.923 22 C -0.145 4.145 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.122 4.122 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.002 0.998 36 H 0.253 0.747 37 H 0.131 0.869 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 -9.432 -10.456 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.228 6.228 3 C 0.028 3.972 4 C -0.192 4.192 5 C -0.133 4.133 6 C -0.076 4.076 7 C 0.055 3.945 8 N -0.309 5.309 9 C 0.014 3.986 10 C -0.385 4.385 11 H 0.086 0.914 12 C -0.194 4.194 13 N -0.540 5.540 14 Si 0.729 3.271 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.204 1.204 18 C -0.170 4.170 19 C 0.054 3.946 20 O -0.218 6.218 21 C 0.020 3.980 22 C -0.183 4.183 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.159 4.159 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.148 0.852 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.728 -9.771 -10.257 14.271 hybrid contribution 0.545 0.235 0.913 1.088 sum -1.183 -9.536 -9.345 13.404 Atomic orbital electron populations 1.22926 0.79662 1.03023 1.00886 1.86106 1.20123 1.26635 1.89931 1.18068 0.89042 0.84662 1.05425 1.20887 0.99010 0.91842 1.07454 1.20631 0.94288 0.96284 1.02080 1.20874 0.93380 0.97538 0.95789 1.19952 0.97109 0.89212 0.88243 1.44130 1.18571 1.58027 1.10130 1.20806 0.90807 0.93601 0.93344 1.19170 0.87494 1.42810 0.88995 0.91392 1.25016 0.96645 1.00739 0.97025 1.70101 1.25062 1.52974 1.05868 0.86318 0.83724 0.77633 0.79406 1.21433 1.21814 1.20353 1.20910 1.00171 0.90372 1.05546 1.18195 0.87892 0.86117 1.02436 1.86159 1.18420 1.28881 1.88328 1.23131 0.78792 0.99472 0.96600 1.22915 0.96785 1.01143 0.97469 1.22443 0.96981 0.96748 0.99928 1.22332 0.98543 0.97707 0.97304 1.22199 0.98580 0.96646 0.98502 0.88981 0.93078 0.93265 0.85861 0.86554 0.92965 0.93333 0.95013 0.94241 0.97949 0.93725 0.85171 0.89925 0.90514 0.90927 0.91146 0.91394 0.91495 0.91486 0.90587 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.31 -5.46 10.28 -34.22 -0.35 -5.81 16 3 C 0.07 1.38 6.70 -39.12 -0.26 1.11 16 4 C -0.17 -3.02 9.04 -39.46 -0.36 -3.38 16 5 C -0.11 -2.12 9.69 -39.57 -0.38 -2.50 16 6 C -0.07 -1.45 5.46 -104.61 -0.57 -2.02 16 7 C 0.18 3.75 5.83 -5.20 -0.03 3.72 16 8 N -0.59 -14.62 2.90 -182.51 -0.53 -15.15 16 9 C 0.16 3.89 9.06 59.85 0.54 4.43 16 10 C -0.26 -6.89 9.62 -15.06 -0.14 -7.04 16 11 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 12 C 0.01 0.15 4.98 -17.43 -0.09 0.06 16 13 N -0.90 -26.26 11.03 55.49 0.61 -25.65 16 14 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.15 -3.00 8.50 -39.46 -0.34 -3.34 16 19 C 0.10 1.94 6.67 -39.12 -0.26 1.68 16 20 O -0.30 -5.63 9.48 -34.23 -0.32 -5.96 16 21 C 0.08 1.20 2.79 -25.61 -0.07 1.13 16 22 C -0.15 -1.93 6.26 -25.07 -0.16 -2.08 16 23 C -0.12 -1.35 6.91 -24.74 -0.17 -1.52 16 24 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16 25 C -0.12 -1.62 6.61 -25.62 -0.17 -1.79 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 28 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 29 H 0.12 1.77 6.30 -52.48 -0.33 1.44 16 30 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.05 1.03 7.98 -51.93 -0.41 0.62 16 32 H 0.05 0.90 7.80 -51.93 -0.41 0.49 16 33 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 34 H 0.04 1.02 7.48 -51.93 -0.39 0.63 16 35 H 0.00 0.04 7.83 -51.93 -0.41 -0.37 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.13 2.54 5.51 -52.49 -0.29 2.25 16 38 H 0.08 1.44 6.18 -51.93 -0.32 1.12 16 39 H 0.08 1.03 8.08 -51.92 -0.42 0.61 16 40 H 0.07 0.96 7.71 -51.93 -0.40 0.56 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 46 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -31.57 367.96 -9.19 -40.76 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.47 Total: 1.23 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.64 Total: -11.66 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.08 Total: -40.80 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.68 Total: -11.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.57 -9.19 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141520958.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.625 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds