Wall clock time and date at job start Tue Mar 31 2020 10:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35993 * 116.99997 * 2 1 4 4 C 1.38559 * 120.07636 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.00381 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.14178 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.92589 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47109 * 89.99881 * 7 6 5 9 9 C 1.46500 * 119.99812 * 269.99737 * 8 7 6 10 10 C 1.36931 * 120.00301 * 90.00219 * 8 7 6 11 11 H 1.08004 * 119.99911 * 22.99312 * 10 8 7 12 12 C 1.38805 * 120.00479 * 202.99450 * 10 8 7 13 13 N 1.31625 * 119.99953 * 18.34353 * 12 10 8 14 14 Si 1.86799 * 120.00249 * 198.35172 * 12 10 8 15 15 H 1.48498 * 109.47464 * 94.98878 * 14 12 10 16 16 H 1.48505 * 109.47243 * 214.98690 * 14 12 10 17 17 H 1.48493 * 109.47152 * 334.98295 * 14 12 10 18 18 C 1.38249 * 120.14847 * 359.67587 * 6 5 4 19 19 C 1.38563 * 119.99668 * 0.59907 * 18 6 5 20 20 O 1.35995 * 120.07316 * 179.69651 * 19 18 6 21 21 C 1.42894 * 116.99864 * 5.77425 * 20 19 18 22 22 C 1.54275 * 110.03087 * 270.69815 * 21 20 19 23 23 C 1.54885 * 104.19736 * 217.10572 * 22 21 20 24 24 C 1.54896 * 102.74728 * 37.94039 * 23 22 21 25 25 C 1.53870 * 110.03348 * 153.53493 * 21 20 19 26 26 H 1.08997 * 109.47435 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47049 * 300.00101 * 1 2 3 28 28 H 1.09004 * 109.46722 * 60.00018 * 1 2 3 29 29 H 1.08004 * 119.99947 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.92934 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47341 * 209.99804 * 7 6 5 32 32 H 1.09003 * 109.47159 * 329.99954 * 7 6 5 33 33 H 1.09003 * 109.47061 * 95.14892 * 9 8 7 34 34 H 1.08998 * 109.47564 * 215.14452 * 9 8 7 35 35 H 1.08997 * 109.47367 * 335.14756 * 9 8 7 36 36 H 0.97002 * 120.00170 * 180.02562 * 13 12 10 37 37 H 1.08001 * 120.00061 * 180.32702 * 18 6 5 38 38 H 1.08998 * 110.02200 * 32.13975 * 21 20 19 39 39 H 1.09009 * 110.48383 * 335.78272 * 22 21 20 40 40 H 1.09000 * 110.48554 * 98.42597 * 22 21 20 41 41 H 1.09004 * 110.75826 * 279.63151 * 23 22 21 42 42 H 1.08999 * 110.75612 * 156.25116 * 23 22 21 43 43 H 1.09001 * 110.48714 * 203.37480 * 24 23 22 44 44 H 1.09005 * 110.48573 * 80.73829 * 24 23 22 45 45 H 1.09009 * 110.03279 * 238.56368 * 25 21 20 46 46 H 1.08994 * 110.03319 * 359.94424 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3748 0.0005 5 6 1.9226 3.6057 0.0011 6 6 3.3031 3.6798 0.0005 7 6 3.9839 5.0242 0.0005 8 7 4.2050 5.4596 1.3817 9 6 3.1837 6.2505 2.0728 10 6 5.3663 5.1274 2.0268 11 1 6.2514 4.8877 1.4562 12 6 5.4061 5.0988 3.4140 13 7 4.2868 5.0298 4.1032 14 14 7.0480 5.1582 4.3028 15 1 7.3583 6.5616 4.6761 16 1 6.9775 4.3239 5.5293 17 1 8.1134 4.6363 3.4098 18 6 4.0605 2.5232 0.0062 19 6 3.4361 1.2862 -0.0001 20 8 4.1796 0.1475 -0.0007 21 6 5.5944 0.2965 0.1334 22 6 6.2434 0.4534 -1.2574 23 6 7.5814 -0.3181 -1.1414 24 6 7.1971 -1.5398 -0.2703 25 6 6.2008 -0.9708 0.7609 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.2147 2.3197 0.0005 30 1 1.3344 4.5115 0.0019 31 1 4.9418 4.9464 -0.5136 32 1 3.3538 5.7505 -0.5129 33 1 2.5477 5.5886 2.6607 34 1 3.6669 6.9707 2.7330 35 1 2.5765 6.7806 1.3391 36 1 4.3145 5.0102 5.0726 37 1 5.1387 2.5838 0.0111 38 1 5.8213 1.1648 0.7521 39 1 5.6114 0.0078 -2.0257 40 1 6.4273 1.5053 -1.4761 41 1 8.3360 0.2900 -0.6424 42 1 7.9291 -0.6382 -2.1236 43 1 8.0770 -1.9427 0.2313 44 1 6.7191 -2.3074 -0.8792 45 1 6.7227 -0.7175 1.6838 46 1 5.4158 -1.6991 0.9641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141520958.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:34 Heat of formation + Delta-G solvation = -50.527573 kcal Electronic energy + Delta-G solvation = -26000.966049 eV Core-core repulsion = 22470.081429 eV Total energy + Delta-G solvation = -3530.884620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57685 -39.95569 -38.67662 -37.41471 -36.59056 -33.49432 -31.43699 -31.10389 -29.70740 -28.91230 -28.37100 -27.92822 -26.70446 -23.68227 -23.49594 -21.97161 -21.63437 -21.02233 -19.49156 -18.69994 -18.15534 -17.44088 -16.86888 -16.76663 -16.50244 -16.03087 -15.65034 -15.53990 -15.39892 -15.18052 -15.03629 -14.62540 -14.31263 -14.00520 -13.89777 -13.24888 -13.12046 -12.93318 -12.83947 -12.77403 -12.55527 -12.40973 -12.20522 -12.09063 -12.04987 -12.00307 -11.96015 -11.80437 -11.73173 -11.57414 -11.54247 -11.34679 -10.63955 -9.53185 -8.84304 -8.60603 -7.83829 -5.29401 0.44766 0.57243 1.43714 1.45433 1.53634 2.29022 2.43863 2.49757 2.84898 3.30368 3.55446 3.59494 3.86925 3.89121 3.95337 4.08310 4.10116 4.28408 4.38202 4.42521 4.43797 4.48291 4.49233 4.53852 4.64223 4.69741 4.73454 4.74567 4.82570 4.87056 4.89679 4.99934 5.00310 5.14402 5.15576 5.21582 5.25318 5.32267 5.40857 5.41853 5.63815 5.69990 5.83449 5.87889 6.22891 6.32081 6.72494 7.13788 7.85826 8.30386 9.19076 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.006012 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.911125 B = 4656.563225 C = 6532.026741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.067 3.933 4 C -0.169 4.169 5 C -0.118 4.118 6 C -0.092 4.092 7 C 0.182 3.818 8 N -0.603 5.603 9 C 0.173 3.827 10 C -0.255 4.255 11 H 0.070 0.930 12 C -0.049 4.049 13 N -0.932 5.932 14 Si 0.958 3.042 15 H -0.286 1.286 16 H -0.299 1.299 17 H -0.265 1.265 18 C -0.160 4.160 19 C 0.080 3.920 20 O -0.315 6.315 21 C 0.068 3.932 22 C -0.141 4.141 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.119 0.881 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.157 0.843 30 H 0.134 0.866 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.002 0.998 34 H 0.014 0.986 35 H 0.039 0.961 36 H 0.246 0.754 37 H 0.124 0.876 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -10.312 -11.882 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.022 3.978 4 C -0.188 4.188 5 C -0.137 4.137 6 C -0.096 4.096 7 C 0.057 3.943 8 N -0.325 5.325 9 C 0.028 3.972 10 C -0.386 4.386 11 H 0.087 0.913 12 C -0.245 4.245 13 N -0.578 5.578 14 Si 0.786 3.214 15 H -0.212 1.212 16 H -0.226 1.226 17 H -0.190 1.190 18 C -0.180 4.180 19 C 0.035 3.965 20 O -0.230 6.230 21 C 0.012 3.988 22 C -0.179 4.179 23 C -0.155 4.155 24 C -0.151 4.151 25 C -0.160 4.160 26 H 0.137 0.863 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.152 0.848 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.020 0.980 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.142 0.858 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.776 -10.664 -11.730 15.952 hybrid contribution 0.446 0.427 1.244 1.389 sum -1.330 -10.236 -10.486 14.714 Atomic orbital electron populations 1.23299 0.76881 1.05299 1.01985 1.86084 1.23027 1.26024 1.89673 1.18335 0.89094 0.85781 1.04576 1.21226 1.00675 0.90842 1.06043 1.20898 0.93825 0.97595 1.01395 1.20856 0.94313 0.97058 0.97340 1.20054 0.98037 0.90154 0.86091 1.44297 1.18232 1.58709 1.11247 1.20564 0.90386 0.92595 0.93628 1.19451 0.88583 1.41248 0.89299 0.91257 1.25708 0.99467 1.01495 0.97846 1.70259 1.26854 1.55217 1.05455 0.85383 0.80627 0.77333 0.78016 1.21243 1.22629 1.18979 1.20940 1.00057 0.90888 1.06078 1.18441 0.88838 0.86275 1.02977 1.86137 1.19758 1.28732 1.88381 1.23368 0.77824 0.99703 0.97950 1.22868 0.97977 1.01323 0.95716 1.22457 0.95458 0.96368 1.01215 1.22328 0.98498 0.97669 0.96616 1.22255 0.98974 0.95440 0.99379 0.86330 0.92542 0.91424 0.82518 0.84769 0.92604 0.90749 0.97978 0.96763 0.94204 0.94477 0.85790 0.92556 0.90756 0.91465 0.90872 0.89232 0.89470 0.90702 0.90485 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.33 -11.21 10.28 -79.61 -0.82 -12.02 16 3 C 0.07 2.50 6.70 22.57 0.15 2.65 16 4 C -0.17 -5.62 9.04 22.35 0.20 -5.42 16 5 C -0.12 -4.25 9.69 22.27 0.22 -4.03 16 6 C -0.09 -3.71 5.46 -19.86 -0.11 -3.82 16 7 C 0.18 7.38 5.83 85.63 0.50 7.88 16 8 N -0.60 -30.02 2.90 -731.32 -2.12 -32.14 16 9 C 0.17 8.48 9.06 127.77 1.16 9.64 16 10 C -0.26 -13.94 9.62 84.03 0.81 -13.14 16 11 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 12 C -0.05 -2.79 4.98 84.86 0.42 -2.37 16 13 N -0.93 -56.07 11.03 21.65 0.24 -55.83 16 14 Si 0.96 45.38 29.59 68.60 2.03 47.41 16 15 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 18 C -0.16 -6.53 8.50 22.35 0.19 -6.34 16 19 C 0.08 3.19 6.67 22.57 0.15 3.34 16 20 O -0.32 -11.96 9.48 -79.63 -0.75 -12.71 16 21 C 0.07 2.17 2.79 31.32 0.09 2.26 16 22 C -0.14 -3.71 6.26 31.67 0.20 -3.51 16 23 C -0.12 -2.35 6.91 31.89 0.22 -2.13 16 24 C -0.11 -2.24 6.83 31.67 0.22 -2.02 16 25 C -0.12 -3.24 6.61 31.32 0.21 -3.03 16 26 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 28 H 0.07 1.23 7.66 -2.38 -0.02 1.21 16 29 H 0.16 4.01 6.30 -2.91 -0.02 4.00 16 30 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.06 2.18 7.98 -2.39 -0.02 2.16 16 32 H 0.07 2.59 7.80 -2.39 -0.02 2.57 16 33 H 0.00 0.11 7.34 -2.39 -0.02 0.09 16 34 H 0.01 0.73 7.48 -2.39 -0.02 0.71 16 35 H 0.04 1.61 7.83 -2.39 -0.02 1.59 16 36 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.12 5.06 5.51 -2.91 -0.02 5.04 16 38 H 0.06 2.07 6.18 -2.39 -0.01 2.06 16 39 H 0.07 1.97 8.08 -2.38 -0.02 1.96 16 40 H 0.07 1.80 7.71 -2.39 -0.02 1.78 16 41 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 46 H 0.07 1.98 7.95 -2.39 -0.02 1.96 16 Total: -1.00 -69.25 367.96 5.26 -63.99 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.95 Total: 19.81 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 5.73 Total: -18.50 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -1.88 Total: -87.97 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.57 Total: -24.74 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.25 5.26 -63.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141520958.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.463 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds