Wall clock time and date at job start Tue Mar 31 2020 09:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47244 * 2 1 4 4 C 1.34776 * 120.00190 * 275.67847 * 3 2 1 5 5 O 1.21277 * 120.00301 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.99708 * 359.97438 * 4 3 2 7 7 C 1.50705 * 109.46861 * 179.97438 * 6 4 3 8 8 H 1.07995 * 119.99785 * 0.02562 * 7 6 4 9 9 C 1.37871 * 119.99949 * 180.02562 * 7 6 4 10 10 N 1.31517 * 119.99852 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00257 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47703 * 89.99463 * 11 9 7 13 13 H 1.48500 * 109.47330 * 210.00030 * 11 9 7 14 14 H 1.48505 * 109.46866 * 329.99335 * 11 9 7 15 15 C 1.46503 * 119.99974 * 95.67554 * 3 2 1 16 16 H 1.08998 * 109.47132 * 184.63773 * 15 3 2 17 17 C 1.53003 * 109.47051 * 64.64056 * 15 3 2 18 18 C 1.52999 * 109.47156 * 304.63905 * 15 3 2 19 19 C 1.50693 * 109.47295 * 185.55899 * 18 15 3 20 20 C 1.38265 * 119.94575 * 84.08718 * 19 18 15 21 21 C 1.38141 * 120.05958 * 179.97438 * 20 19 18 22 22 C 1.38740 * 119.94210 * 359.97438 * 21 20 19 23 23 O 1.35899 * 120.05282 * 179.97438 * 22 21 20 24 24 C 1.42896 * 116.99666 * 180.02562 * 23 22 21 25 25 C 1.38733 * 119.88694 * 0.26150 * 22 21 20 26 26 C 1.38141 * 119.94369 * 359.48662 * 25 22 21 27 27 H 1.08998 * 109.47480 * 304.05553 * 1 2 3 28 28 H 1.09008 * 109.47108 * 64.05662 * 1 2 3 29 29 H 1.09002 * 109.46919 * 184.05037 * 1 2 3 30 30 H 1.09002 * 109.47237 * 240.00016 * 2 1 3 31 31 H 1.08997 * 109.47067 * 119.99979 * 2 1 3 32 32 H 1.08998 * 109.47089 * 299.99607 * 6 4 3 33 33 H 1.08994 * 109.47486 * 60.00111 * 6 4 3 34 34 H 0.97003 * 119.99866 * 180.02562 * 10 9 7 35 35 H 1.08997 * 109.47032 * 59.99743 * 17 15 3 36 36 H 1.08998 * 109.47191 * 179.97438 * 17 15 3 37 37 H 1.09006 * 109.46779 * 300.00138 * 17 15 3 38 38 H 1.09009 * 109.46919 * 65.55828 * 18 15 3 39 39 H 1.09003 * 109.46973 * 305.56150 * 18 15 3 40 40 H 1.07998 * 119.97114 * 359.95735 * 20 19 18 41 41 H 1.08003 * 120.02868 * 180.02562 * 21 20 19 42 42 H 1.08999 * 109.47307 * 300.00125 * 24 23 22 43 43 H 1.08997 * 109.47341 * 60.00600 * 24 23 22 44 44 H 1.09007 * 109.47115 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.02458 * 179.72701 * 25 22 21 46 46 H 1.07997 * 119.96888 * 180.25832 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1341 2.0551 -1.1614 5 8 2.5379 3.1986 -1.1614 6 6 1.7617 1.3875 -2.4602 7 6 1.9806 2.3489 -3.6000 8 1 2.3526 3.3435 -3.4035 9 6 1.7060 1.9585 -4.8935 10 7 1.2535 0.7471 -5.1327 11 14 1.9780 3.1498 -6.3063 12 1 3.3635 3.0013 -6.8194 13 1 1.0125 2.8549 -7.3954 14 1 1.7739 4.5406 -5.8273 15 6 2.3808 2.0300 1.2625 16 1 2.6407 3.0717 1.0742 17 6 3.5804 1.3088 1.8805 18 6 1.1951 1.9666 2.2274 19 6 1.5183 2.7509 3.4728 20 6 1.3190 4.1189 3.4981 21 6 1.6140 4.8402 4.6387 22 6 2.1103 4.1906 5.7598 23 8 2.4018 4.8981 6.8829 24 6 2.9096 4.1637 7.9986 25 6 2.3140 2.8187 5.7302 26 6 2.0125 2.1012 4.5889 27 1 -0.3634 0.5755 0.8514 28 1 -0.3634 0.4496 -0.9242 29 1 -0.3633 -1.0251 0.0726 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3828 0.5036 -2.6056 33 1 0.7126 1.0934 -2.4299 34 1 1.0606 0.4723 -6.0428 35 1 4.4251 1.3540 1.1931 36 1 3.8504 1.7918 2.8196 37 1 3.3205 0.2671 2.0688 38 1 0.9980 0.9279 2.4930 39 1 0.3136 2.3926 1.7482 40 1 0.9326 4.6241 2.6253 41 1 1.4577 5.9087 4.6581 42 1 2.1779 3.4161 8.3049 43 1 3.8382 3.6684 7.7152 44 1 3.0996 4.8463 8.8269 45 1 2.7044 2.3114 6.6001 46 1 2.1670 1.0326 4.5668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:42 Heat of formation + Delta-G solvation = -61.508072 kcal Electronic energy + Delta-G solvation = -25048.180413 eV Core-core repulsion = 21516.819643 eV Total energy + Delta-G solvation = -3531.360770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.38739 -39.36420 -37.88855 -35.87209 -33.42827 -32.74400 -31.23057 -30.61140 -29.29592 -28.41820 -27.74823 -26.20254 -23.82352 -23.08959 -22.75054 -21.75431 -20.28877 -18.33571 -18.27181 -16.75365 -16.39682 -15.98591 -15.88572 -15.63486 -15.23343 -14.60417 -14.41573 -14.33976 -13.98047 -13.76116 -13.48307 -13.38641 -13.03828 -12.81646 -12.61234 -12.35000 -12.21875 -12.10499 -11.96222 -11.69932 -11.44239 -11.34344 -11.11488 -11.04091 -10.84025 -10.77788 -10.72744 -10.50461 -10.36907 -9.91329 -9.19032 -9.11669 -8.55693 -8.40402 -8.33634 -7.94609 -6.03182 -4.02103 1.22149 1.28525 3.05131 3.36461 3.41603 3.47834 3.55326 3.71033 3.74694 4.50397 4.58040 4.70719 4.81044 4.83307 4.90401 5.00506 5.13879 5.20133 5.26137 5.33256 5.34412 5.34824 5.47635 5.56607 5.63929 5.66750 5.77237 5.77908 5.87307 5.98428 6.02422 6.10750 6.14884 6.22039 6.27531 6.34409 6.46798 6.56323 6.62522 6.65137 7.13979 7.20204 7.30289 7.39382 7.98863 8.02952 8.42335 9.08563 9.26367 9.62727 11.09086 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.002836 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.863929 B = 9871.561035 C =10474.634681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 N -0.624 5.624 4 C 0.517 3.483 5 O -0.546 6.546 6 C 0.008 3.992 7 C -0.507 4.507 8 H 0.074 0.926 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.900 3.100 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.140 3.860 16 H 0.098 0.902 17 C -0.159 4.159 18 C -0.085 4.085 19 C -0.107 4.107 20 C -0.074 4.074 21 C -0.148 4.148 22 C 0.117 3.883 23 O -0.320 6.320 24 C 0.028 3.972 25 C -0.208 4.208 26 C -0.076 4.076 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 -1.081 24.568 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.012 4.012 3 N -0.360 5.360 4 C 0.309 3.691 5 O -0.422 6.422 6 C -0.031 4.031 7 C -0.546 4.546 8 H 0.092 0.908 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.728 3.272 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.197 1.197 15 C 0.036 3.964 16 H 0.116 0.884 17 C -0.217 4.217 18 C -0.123 4.123 19 C -0.107 4.107 20 C -0.092 4.092 21 C -0.167 4.167 22 C 0.072 3.928 23 O -0.234 6.234 24 C -0.067 4.067 25 C -0.226 4.226 26 C -0.094 4.094 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.116 0.884 45 H 0.143 0.857 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.466 -0.364 24.430 24.438 hybrid contribution 0.162 0.103 -0.586 0.616 sum 0.628 -0.261 23.845 23.854 Atomic orbital electron populations 1.22352 0.96402 1.01670 1.03041 1.21372 0.94186 0.83119 1.02547 1.48333 1.67478 1.14052 1.06115 1.22048 0.75098 0.86337 0.85631 1.90517 1.46011 1.18758 1.86899 1.19284 0.98605 0.97263 0.87965 1.21205 1.43196 1.00027 0.90161 0.90791 1.24995 0.95232 0.95416 0.98959 1.69959 1.45588 1.17924 1.20613 0.86455 0.77863 0.81496 0.81429 1.20651 1.21305 1.19698 1.20848 0.92852 0.99215 0.83469 0.88430 1.22165 0.98416 1.00313 1.00848 1.21008 0.99036 0.99678 0.92593 1.19767 1.01391 0.93993 0.95593 1.20965 0.97571 0.93482 0.97160 1.20431 1.04193 1.00530 0.91519 1.19030 0.96471 0.90411 0.86892 1.86061 1.79691 1.36683 1.20971 1.23024 0.98421 0.97773 0.87467 1.21177 1.08044 0.93125 1.00300 1.20837 0.97012 0.99636 0.91895 0.92649 0.91373 0.92201 0.90012 0.91378 0.93650 0.93251 0.92976 0.92356 0.91916 0.92714 0.90846 0.90459 0.85075 0.85293 0.92762 0.92696 0.88402 0.85717 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.99 37.16 0.37 -2.01 16 2 C 0.11 1.60 5.08 -4.04 -0.02 1.58 16 3 N -0.62 -10.90 2.38 -166.10 -0.40 -11.30 16 4 C 0.52 11.89 7.63 -10.98 -0.08 11.81 16 5 O -0.55 -14.35 14.79 5.56 0.08 -14.27 16 6 C 0.01 0.20 4.07 -29.03 -0.12 0.08 16 7 C -0.51 -14.83 8.92 -34.44 -0.31 -15.13 16 8 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 11 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.14 2.10 2.68 -67.93 -0.18 1.92 16 16 H 0.10 1.74 6.91 -51.93 -0.36 1.38 16 17 C -0.16 -2.03 8.92 37.16 0.33 -1.70 16 18 C -0.08 -1.04 3.54 -27.89 -0.10 -1.14 16 19 C -0.11 -1.24 4.55 -104.60 -0.48 -1.71 16 20 C -0.07 -0.88 9.72 -39.61 -0.38 -1.27 16 21 C -0.15 -1.72 9.99 -39.43 -0.39 -2.11 16 22 C 0.12 1.31 6.69 -39.21 -0.26 1.05 16 23 O -0.32 -3.36 10.50 -19.42 -0.20 -3.56 16 24 C 0.03 0.18 9.81 101.05 0.99 1.17 16 25 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 26 C -0.08 -0.77 8.43 -39.60 -0.33 -1.11 16 27 H 0.05 0.69 5.97 -51.93 -0.31 0.38 16 28 H 0.07 1.11 6.52 -51.92 -0.34 0.77 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.28 6.68 -51.93 -0.35 0.93 16 31 H 0.07 0.79 6.55 -51.93 -0.34 0.45 16 32 H 0.05 1.18 7.42 -51.93 -0.39 0.79 16 33 H 0.05 1.27 6.47 -51.93 -0.34 0.93 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.73 6.58 -51.93 -0.34 0.39 16 37 H 0.05 0.60 6.88 -51.93 -0.36 0.25 16 38 H 0.07 0.79 7.10 -51.92 -0.37 0.42 16 39 H 0.08 1.02 7.62 -51.93 -0.40 0.63 16 40 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 43 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 44 H 0.10 0.43 8.14 -51.92 -0.42 0.00 16 45 H 0.12 0.95 6.30 -52.49 -0.33 0.62 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -33.27 366.31 -7.73 -41.00 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.03 Total: 0.49 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.42 Total: -9.52 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.34 Total: -36.94 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.12 Total: -17.83 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.27 -7.73 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.507 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds