Wall clock time and date at job start Tue Mar 31 2020 09:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47244 * 2 1 4 4 C 1.34776 * 120.00190 * 275.67847 * 3 2 1 5 5 O 1.21277 * 120.00301 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.99708 * 359.97438 * 4 3 2 7 7 C 1.50705 * 109.46861 * 179.97438 * 6 4 3 8 8 H 1.07995 * 119.99785 * 0.02562 * 7 6 4 9 9 C 1.37871 * 119.99949 * 180.02562 * 7 6 4 10 10 N 1.31517 * 119.99852 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00257 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47703 * 89.99463 * 11 9 7 13 13 H 1.48500 * 109.47330 * 210.00030 * 11 9 7 14 14 H 1.48505 * 109.46866 * 329.99335 * 11 9 7 15 15 C 1.46503 * 119.99974 * 95.67554 * 3 2 1 16 16 H 1.08998 * 109.47132 * 184.63773 * 15 3 2 17 17 C 1.53003 * 109.47051 * 64.64056 * 15 3 2 18 18 C 1.52999 * 109.47156 * 304.63905 * 15 3 2 19 19 C 1.50693 * 109.47295 * 185.55899 * 18 15 3 20 20 C 1.38265 * 119.94575 * 84.08718 * 19 18 15 21 21 C 1.38141 * 120.05958 * 179.97438 * 20 19 18 22 22 C 1.38740 * 119.94210 * 359.97438 * 21 20 19 23 23 O 1.35899 * 120.05282 * 179.97438 * 22 21 20 24 24 C 1.42896 * 116.99666 * 180.02562 * 23 22 21 25 25 C 1.38733 * 119.88694 * 0.26150 * 22 21 20 26 26 C 1.38141 * 119.94369 * 359.48662 * 25 22 21 27 27 H 1.08998 * 109.47480 * 304.05553 * 1 2 3 28 28 H 1.09008 * 109.47108 * 64.05662 * 1 2 3 29 29 H 1.09002 * 109.46919 * 184.05037 * 1 2 3 30 30 H 1.09002 * 109.47237 * 240.00016 * 2 1 3 31 31 H 1.08997 * 109.47067 * 119.99979 * 2 1 3 32 32 H 1.08998 * 109.47089 * 299.99607 * 6 4 3 33 33 H 1.08994 * 109.47486 * 60.00111 * 6 4 3 34 34 H 0.97003 * 119.99866 * 180.02562 * 10 9 7 35 35 H 1.08997 * 109.47032 * 59.99743 * 17 15 3 36 36 H 1.08998 * 109.47191 * 179.97438 * 17 15 3 37 37 H 1.09006 * 109.46779 * 300.00138 * 17 15 3 38 38 H 1.09009 * 109.46919 * 65.55828 * 18 15 3 39 39 H 1.09003 * 109.46973 * 305.56150 * 18 15 3 40 40 H 1.07998 * 119.97114 * 359.95735 * 20 19 18 41 41 H 1.08003 * 120.02868 * 180.02562 * 21 20 19 42 42 H 1.08999 * 109.47307 * 300.00125 * 24 23 22 43 43 H 1.08997 * 109.47341 * 60.00600 * 24 23 22 44 44 H 1.09007 * 109.47115 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.02458 * 179.72701 * 25 22 21 46 46 H 1.07997 * 119.96888 * 180.25832 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1341 2.0551 -1.1614 5 8 2.5379 3.1986 -1.1614 6 6 1.7617 1.3875 -2.4602 7 6 1.9806 2.3489 -3.6000 8 1 2.3526 3.3435 -3.4035 9 6 1.7060 1.9585 -4.8935 10 7 1.2535 0.7471 -5.1327 11 14 1.9780 3.1498 -6.3063 12 1 3.3635 3.0013 -6.8194 13 1 1.0125 2.8549 -7.3954 14 1 1.7739 4.5406 -5.8273 15 6 2.3808 2.0300 1.2625 16 1 2.6407 3.0717 1.0742 17 6 3.5804 1.3088 1.8805 18 6 1.1951 1.9666 2.2274 19 6 1.5183 2.7509 3.4728 20 6 1.3190 4.1189 3.4981 21 6 1.6140 4.8402 4.6387 22 6 2.1103 4.1906 5.7598 23 8 2.4018 4.8981 6.8829 24 6 2.9096 4.1637 7.9986 25 6 2.3140 2.8187 5.7302 26 6 2.0125 2.1012 4.5889 27 1 -0.3634 0.5755 0.8514 28 1 -0.3634 0.4496 -0.9242 29 1 -0.3633 -1.0251 0.0726 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3828 0.5036 -2.6056 33 1 0.7126 1.0934 -2.4299 34 1 1.0606 0.4723 -6.0428 35 1 4.4251 1.3540 1.1931 36 1 3.8504 1.7918 2.8196 37 1 3.3205 0.2671 2.0688 38 1 0.9980 0.9279 2.4930 39 1 0.3136 2.3926 1.7482 40 1 0.9326 4.6241 2.6253 41 1 1.4577 5.9087 4.6581 42 1 2.1779 3.4161 8.3049 43 1 3.8382 3.6684 7.7152 44 1 3.0996 4.8463 8.8269 45 1 2.7044 2.3114 6.6001 46 1 2.1670 1.0326 4.5668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:41 Heat of formation + Delta-G solvation = -80.844893 kcal Electronic energy + Delta-G solvation = -25049.018921 eV Core-core repulsion = 21516.819643 eV Total energy + Delta-G solvation = -3532.199277 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29736 -40.76898 -38.85458 -37.32107 -35.21158 -34.31704 -32.04690 -31.66779 -30.98058 -29.93815 -28.44364 -27.10942 -25.82406 -24.27905 -23.56720 -22.93896 -21.44436 -19.73531 -19.07110 -18.68395 -17.68065 -17.22030 -17.14791 -16.61786 -16.44018 -16.23894 -15.91091 -15.32488 -15.01274 -14.74902 -14.64859 -14.59217 -14.35112 -14.14055 -14.05387 -13.58632 -13.30425 -13.19748 -13.10113 -12.83092 -12.80294 -12.72696 -12.62640 -12.33449 -12.26196 -11.98463 -11.93840 -11.72771 -11.66820 -11.56383 -11.36766 -10.61324 -10.40742 -9.93543 -9.62069 -8.97203 -8.25038 -6.31835 0.39829 0.43975 1.38459 1.39294 1.51959 1.89846 2.18062 2.40535 2.44058 2.79646 3.09551 3.77231 3.91100 3.93651 4.01218 4.14561 4.19425 4.28460 4.30787 4.41851 4.42257 4.46828 4.47727 4.55244 4.64409 4.66273 4.74776 4.75857 4.83029 4.94744 5.00226 5.03613 5.09613 5.12357 5.22546 5.27200 5.32264 5.35079 5.40006 5.48116 5.69631 5.73308 5.83444 5.89911 6.07842 6.47711 6.59664 6.81711 7.34462 7.51264 8.86836 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.002836 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.863929 B = 9871.561035 C =10474.634681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.610 5.610 4 C 0.515 3.485 5 O -0.590 6.590 6 C 0.016 3.984 7 C -0.539 4.539 8 H 0.050 0.950 9 C 0.012 3.988 10 N -0.921 5.921 11 Si 0.962 3.038 12 H -0.271 1.271 13 H -0.272 1.272 14 H -0.277 1.277 15 C 0.137 3.863 16 H 0.061 0.939 17 C -0.150 4.150 18 C -0.071 4.071 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.166 4.166 22 C 0.110 3.890 23 O -0.340 6.340 24 C 0.018 3.982 25 C -0.205 4.205 26 C -0.069 4.069 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.267 0.733 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.116 0.884 45 H 0.153 0.847 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 -2.945 26.802 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.344 5.344 4 C 0.306 3.694 5 O -0.471 6.471 6 C -0.023 4.023 7 C -0.577 4.577 8 H 0.069 0.931 9 C -0.187 4.187 10 N -0.561 5.561 11 Si 0.786 3.214 12 H -0.196 1.196 13 H -0.197 1.197 14 H -0.202 1.202 15 C 0.034 3.966 16 H 0.079 0.921 17 C -0.208 4.208 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.185 4.185 22 C 0.065 3.935 23 O -0.254 6.254 24 C -0.076 4.076 25 C -0.223 4.223 26 C -0.087 4.087 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.134 0.866 45 H 0.171 0.829 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.663 -2.277 26.712 26.817 hybrid contribution 0.100 0.665 -1.153 1.335 sum 0.763 -1.612 25.559 25.621 Atomic orbital electron populations 1.22295 0.95447 1.03415 1.01725 1.21679 0.94965 0.81147 1.04011 1.48247 1.65671 1.14985 1.05448 1.21571 0.75291 0.85832 0.86708 1.90488 1.48372 1.20483 1.87724 1.19062 0.97994 0.96313 0.88910 1.21401 1.44271 0.99906 0.92139 0.93130 1.25754 0.94620 0.97169 1.01179 1.70025 1.45509 1.19047 1.21548 0.85501 0.78448 0.78949 0.78469 1.19646 1.19654 1.20164 1.21027 0.95400 0.97431 0.82777 0.92105 1.22096 0.96248 1.01791 1.00674 1.20850 0.96803 1.01321 0.91953 1.19730 1.02616 0.93602 0.95972 1.20988 0.98396 0.94235 0.97112 1.20530 1.05097 1.00813 0.92053 1.19195 0.96149 0.91196 0.86976 1.86041 1.79805 1.37957 1.21595 1.23336 0.99047 0.98573 0.86637 1.21490 1.07145 0.92522 1.01182 1.21118 0.95625 1.00958 0.91025 0.91289 0.94956 0.89278 0.91489 0.86940 0.94458 0.93833 0.92391 0.94368 0.90323 0.89800 0.88038 0.92061 0.86274 0.85301 0.91483 0.91702 0.86587 0.82923 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.33 9.99 71.98 0.72 -3.61 16 2 C 0.10 2.81 5.08 86.38 0.44 3.25 16 3 N -0.61 -21.35 2.38 -797.83 -1.90 -23.25 16 4 C 0.51 24.75 7.63 87.66 0.67 25.42 16 5 O -0.59 -32.91 14.79 -3.02 -0.04 -32.95 16 6 C 0.02 0.87 4.07 29.11 0.12 0.99 16 7 C -0.54 -32.77 8.92 25.60 0.23 -32.54 16 8 H 0.05 3.26 6.75 -2.91 -0.02 3.24 16 9 C 0.01 0.67 5.46 84.65 0.46 1.14 16 10 N -0.92 -54.46 13.29 21.45 0.28 -54.17 16 11 Si 0.96 46.32 29.54 68.60 2.03 48.34 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 15 C 0.14 4.03 2.68 44.99 0.12 4.15 16 16 H 0.06 2.27 6.91 -2.39 -0.02 2.26 16 17 C -0.15 -3.49 8.92 71.98 0.64 -2.84 16 18 C -0.07 -1.62 3.54 29.85 0.11 -1.52 16 19 C -0.12 -2.57 4.55 -19.85 -0.09 -2.66 16 20 C -0.09 -2.18 9.72 22.25 0.22 -1.97 16 21 C -0.17 -3.90 9.99 22.37 0.22 -3.68 16 22 C 0.11 2.31 6.69 22.51 0.15 2.46 16 23 O -0.34 -6.63 10.50 -92.42 -0.97 -7.60 16 24 C 0.02 0.18 9.81 113.37 1.11 1.30 16 25 C -0.20 -3.43 9.04 22.37 0.20 -3.22 16 26 C -0.07 -1.18 8.43 22.25 0.19 -0.99 16 27 H 0.07 1.56 5.97 -2.39 -0.01 1.54 16 28 H 0.03 1.05 6.52 -2.38 -0.02 1.03 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.05 6.68 -2.39 -0.02 2.03 16 31 H 0.11 2.09 6.55 -2.39 -0.02 2.08 16 32 H 0.04 2.01 7.42 -2.39 -0.02 2.00 16 33 H 0.04 2.34 6.47 -2.39 -0.02 2.32 16 34 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.60 6.58 -2.39 -0.02 1.59 16 37 H 0.08 1.46 6.88 -2.38 -0.02 1.44 16 38 H 0.10 1.74 7.10 -2.38 -0.02 1.72 16 39 H 0.06 1.60 7.62 -2.39 -0.02 1.58 16 40 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 41 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.07 0.50 7.67 -2.39 -0.02 0.49 16 43 H 0.06 0.53 7.65 -2.39 -0.02 0.51 16 44 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.15 1.64 6.30 -2.91 -0.02 1.63 16 46 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -75.64 366.31 5.87 -69.77 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.97 Total: 14.19 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 5.51 Total: -14.32 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.62 Total: -77.43 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.01 Total: -40.56 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -75.64 5.87 -69.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.071 kcal (2) G-P(sol) polarization free energy of solvation -75.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds