Wall clock time and date at job start Tue Mar 31 2020 10:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35669 * 117.00357 * 2 1 4 4 C 1.38035 * 120.20825 * 359.97438 * 3 2 1 5 5 C 1.39218 * 119.97897 * 180.02562 * 4 3 2 6 6 N 1.38919 * 119.80065 * 179.97438 * 5 4 3 7 7 C 1.46501 * 120.00387 * 180.02562 * 6 5 4 8 8 C 1.52991 * 109.47082 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47074 * 180.02562 * 8 7 6 10 10 C 1.53174 * 109.54219 * 294.55372 * 9 8 7 11 11 C 1.53097 * 109.16265 * 183.15096 * 10 9 8 12 12 O 1.42895 * 109.41512 * 57.60568 * 11 10 9 13 13 C 1.42907 * 114.10373 * 298.84524 * 12 11 10 14 14 C 1.53096 * 109.41333 * 61.15445 * 13 12 11 15 15 C 1.39722 * 120.40380 * 0.02671 * 5 4 3 16 16 C 1.36229 * 120.42709 * 359.68874 * 15 5 4 17 17 C 1.40849 * 120.01256 * 0.56263 * 16 15 5 18 18 C 1.40960 * 120.20496 * 179.73855 * 17 16 15 19 19 H 1.07995 * 120.00566 * 208.73818 * 18 17 16 20 20 C 1.39850 * 119.99825 * 28.73320 * 18 17 16 21 21 N 1.30943 * 120.00089 * 197.90768 * 20 18 17 22 22 Si 1.86803 * 119.99898 * 17.90919 * 20 18 17 23 23 H 1.48493 * 109.47363 * 269.99826 * 22 20 18 24 24 H 1.48504 * 109.46949 * 29.99952 * 22 20 18 25 25 H 1.48504 * 109.47203 * 149.99629 * 22 20 18 26 26 H 1.09004 * 109.47481 * 300.00111 * 1 2 3 27 27 H 1.09001 * 109.46775 * 60.00001 * 1 2 3 28 28 H 1.08998 * 109.47712 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.01134 * 0.02562 * 4 3 2 30 30 H 0.97004 * 119.99571 * 0.02562 * 6 5 4 31 31 H 1.09007 * 109.46670 * 300.00572 * 7 6 5 32 32 H 1.09002 * 109.46633 * 60.00068 * 7 6 5 33 33 H 1.09007 * 109.47319 * 299.99543 * 8 7 6 34 34 H 1.09002 * 109.47846 * 60.00179 * 8 7 6 35 35 H 1.09007 * 109.54319 * 54.82036 * 9 8 7 36 36 H 1.08997 * 109.52621 * 303.05490 * 10 9 8 37 37 H 1.09003 * 109.52380 * 63.24575 * 10 9 8 38 38 H 1.09008 * 109.47603 * 297.62474 * 11 10 9 39 39 H 1.08997 * 109.47745 * 177.59678 * 11 10 9 40 40 H 1.09000 * 109.47369 * 301.17339 * 13 12 11 41 41 H 1.08996 * 109.49175 * 181.14392 * 13 12 11 42 42 H 1.08991 * 109.51867 * 182.48859 * 14 13 12 43 43 H 1.09000 * 109.52314 * 62.29702 * 14 13 12 44 44 H 1.08004 * 119.78539 * 179.97438 * 15 5 4 45 45 H 1.08007 * 119.99109 * 180.30105 * 16 15 5 46 46 H 0.96999 * 120.00529 * 355.43525 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3692 -0.0005 5 6 1.9345 3.6071 -0.0011 6 7 1.1786 4.7726 -0.0021 7 6 1.8444 6.0776 -0.0033 8 6 0.7913 7.1873 -0.0037 9 6 1.4866 8.5503 -0.0055 10 6 2.2547 8.7354 1.3068 11 6 2.8816 10.1319 1.3294 12 8 1.8563 11.1154 1.1767 13 6 1.1355 11.0209 -0.0536 14 6 0.4384 9.6601 -0.1318 15 6 3.3296 3.6844 -0.0016 16 6 4.0834 2.5497 0.0047 17 6 3.4575 1.2879 -0.0001 18 6 4.2336 0.1112 0.0009 19 1 3.8482 -0.7903 -0.4519 20 6 5.5028 0.1112 0.5882 21 7 6.3588 -0.8360 0.2974 22 14 5.9769 1.4626 1.7877 23 1 6.5937 2.5904 1.0442 24 1 4.7639 1.9422 2.4976 25 1 6.9498 0.9294 2.7748 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.2187 2.3169 -0.0005 30 1 0.2099 4.7223 -0.0021 31 1 2.4673 6.1684 0.8867 32 1 2.4672 6.1668 -0.8934 33 1 0.1681 7.0967 -0.8935 34 1 0.1687 7.0979 0.8866 35 1 2.1789 8.6053 -0.8457 36 1 1.5695 8.6301 2.1479 37 1 3.0396 7.9825 1.3787 38 1 3.5969 10.2225 0.5118 39 1 3.3938 10.2850 2.2793 40 1 1.8279 11.1232 -0.8892 41 1 0.3898 11.8145 -0.1002 42 1 -0.0755 9.5686 -1.0886 43 1 -0.2834 9.5734 0.6803 44 1 3.8134 4.6500 -0.0025 45 1 5.1614 2.6176 0.0091 46 1 6.0910 -1.5734 -0.2730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162221297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:12 Heat of formation + Delta-G solvation = -79.566111 kcal Electronic energy + Delta-G solvation = -24750.811593 eV Core-core repulsion = 21218.667768 eV Total energy + Delta-G solvation = -3532.143825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.76253 -38.96596 -37.19290 -35.87581 -34.42636 -32.87839 -31.40782 -30.41972 -29.07399 -28.32199 -26.63522 -25.04526 -23.87829 -23.25004 -22.18127 -21.14954 -20.25213 -19.91623 -18.03151 -17.19859 -16.38558 -16.30021 -15.90161 -15.45473 -14.95358 -14.80745 -14.70702 -14.43920 -14.21672 -14.11413 -13.93380 -13.71553 -13.03298 -12.72159 -12.58402 -12.51110 -12.12697 -11.91634 -11.72009 -11.59058 -11.45060 -11.37340 -11.08667 -10.67625 -10.61895 -10.53509 -10.46479 -10.42441 -10.22045 -9.79051 -9.73913 -9.26384 -9.06016 -8.51233 -7.35949 -7.15049 -6.58345 -4.08215 2.63919 2.81288 3.29861 3.46176 3.60405 3.64762 3.99505 4.18691 4.37286 4.40749 4.48579 4.64192 4.68179 4.72489 4.90957 5.06798 5.12929 5.20684 5.29188 5.38524 5.42857 5.47510 5.53042 5.60642 5.65836 5.70932 5.72570 5.76179 5.83698 5.84088 5.96214 5.98745 6.09927 6.14611 6.18803 6.50671 6.69910 6.87912 6.91473 7.02910 7.44887 7.62853 7.78197 7.87898 8.20268 8.32742 8.47012 8.65319 8.80130 9.07510 10.28257 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.003169 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.074139 B = 8834.779878 C =10189.521242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.307 6.307 3 C 0.061 3.939 4 C -0.232 4.232 5 C 0.123 3.877 6 N -0.760 5.760 7 C 0.136 3.864 8 C -0.122 4.122 9 C -0.086 4.086 10 C -0.155 4.155 11 C 0.060 3.940 12 O -0.386 6.386 13 C 0.060 3.940 14 C -0.150 4.150 15 C -0.167 4.167 16 C -0.189 4.189 17 C 0.051 3.949 18 C -0.507 4.507 19 H 0.075 0.925 20 C 0.037 3.963 21 N -0.836 5.836 22 Si 1.074 2.926 23 H -0.280 1.280 24 H -0.265 1.265 25 H -0.293 1.293 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.385 0.615 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 18.674 0.029 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.220 6.220 3 C 0.016 3.984 4 C -0.255 4.255 5 C 0.025 3.975 6 N -0.395 5.395 7 C 0.010 3.990 8 C -0.160 4.160 9 C -0.105 4.105 10 C -0.192 4.192 11 C -0.017 4.017 12 O -0.305 6.305 13 C -0.016 4.016 14 C -0.188 4.188 15 C -0.189 4.189 16 C -0.208 4.208 17 C 0.048 3.952 18 C -0.538 4.538 19 H 0.094 0.906 20 C -0.179 4.179 21 N -0.460 5.460 22 Si 0.901 3.099 23 H -0.207 1.207 24 H -0.190 1.190 25 H -0.221 1.221 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.217 0.783 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.052 19.205 1.053 21.257 hybrid contribution -1.928 -0.836 -1.333 2.488 sum -10.980 18.369 -0.280 21.402 Atomic orbital electron populations 1.22766 0.81547 1.01946 0.99963 1.86030 1.18373 1.27978 1.89664 1.18967 0.92098 0.82330 1.04999 1.20175 0.97431 0.91467 1.16422 1.16957 0.90294 0.84892 1.05358 1.43893 1.06519 1.02217 1.86891 1.21096 0.94808 0.82611 1.00437 1.21774 0.98377 0.93428 1.02424 1.21129 0.97123 0.94131 0.98116 1.22328 1.00996 0.97750 0.98149 1.22612 0.89520 0.87600 1.01973 1.87922 1.49879 1.53776 1.38889 1.22570 0.95238 0.97158 0.86684 1.22245 0.98666 0.95065 1.02843 1.19858 0.91462 0.97407 1.10207 1.20469 0.98406 0.91562 1.10412 1.17090 0.88146 0.93711 0.96302 1.20245 1.01391 0.97644 1.34508 0.90642 1.27112 0.91768 1.01579 0.97401 1.70575 1.34806 1.10279 1.30390 0.83588 0.76722 0.73778 0.75765 1.20715 1.19003 1.22062 0.94013 0.94145 0.89870 0.88156 0.78275 0.93120 0.93426 0.91543 0.91516 0.90773 0.90921 0.90166 0.93153 0.88845 0.93243 0.89054 0.90876 0.90998 0.88656 0.87065 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.14 9.83 -18.71 -0.18 -7.32 16 3 C 0.06 1.50 6.71 -38.43 -0.26 1.25 16 4 C -0.23 -4.94 8.86 -39.29 -0.35 -5.28 16 5 C 0.12 2.50 6.66 -83.73 -0.56 1.95 16 6 N -0.76 -12.02 5.70 -58.54 -0.33 -12.36 16 7 C 0.14 1.77 4.65 -4.05 -0.02 1.75 16 8 C -0.12 -1.19 4.80 -26.73 -0.13 -1.32 16 9 C -0.09 -0.74 2.27 -90.43 -0.21 -0.95 16 10 C -0.15 -1.38 5.10 -26.59 -0.14 -1.51 16 11 C 0.06 0.51 6.84 37.21 0.25 0.77 16 12 O -0.39 -3.90 10.76 -35.23 -0.38 -4.28 16 13 C 0.06 0.47 6.84 37.21 0.25 0.72 16 14 C -0.15 -1.15 5.42 -26.59 -0.14 -1.29 16 15 C -0.17 -3.64 9.22 -39.75 -0.37 -4.00 16 16 C -0.19 -4.64 7.21 -39.32 -0.28 -4.93 16 17 C 0.05 1.37 5.15 -106.65 -0.55 0.82 16 18 C -0.51 -14.52 9.05 -37.95 -0.34 -14.86 16 19 H 0.08 2.29 7.88 -52.49 -0.41 1.88 16 20 C 0.04 1.04 5.41 -17.33 -0.09 0.95 16 21 N -0.84 -23.76 13.66 55.54 0.76 -23.00 16 22 Si 1.07 25.47 24.90 -169.99 -4.23 21.24 16 23 H -0.28 -6.22 6.43 56.52 0.36 -5.86 16 24 H -0.27 -6.27 7.04 56.52 0.40 -5.87 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H 0.04 0.64 7.66 -51.93 -0.40 0.25 16 27 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.85 6.29 -52.49 -0.33 1.52 16 30 H 0.38 5.35 8.47 -40.82 -0.35 5.01 16 31 H 0.05 0.69 6.44 -51.92 -0.33 0.35 16 32 H 0.05 0.65 7.92 -51.93 -0.41 0.24 16 33 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.73 6.75 -51.93 -0.35 0.38 16 38 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 1.84 6.67 -52.48 -0.35 1.49 16 45 H 0.11 2.72 4.39 -52.48 -0.23 2.49 16 46 H 0.28 7.87 8.73 -40.82 -0.36 7.51 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -30.90 357.88 -8.32 -39.22 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.41 Total: 5.49 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -1.93 Total: -24.38 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.43 Total: -35.36 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.56 Total: -11.60 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -4.23 Total: 21.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.90 -8.32 -39.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162221297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.347 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds