Wall clock time and date at job start Tue Mar 31 2020 10:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35669 * 117.00357 * 2 1 4 4 C 1.38035 * 120.20825 * 359.97438 * 3 2 1 5 5 C 1.39218 * 119.97897 * 180.02562 * 4 3 2 6 6 N 1.38919 * 119.80065 * 179.97438 * 5 4 3 7 7 C 1.46501 * 120.00387 * 180.02562 * 6 5 4 8 8 C 1.52991 * 109.47082 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47074 * 180.02562 * 8 7 6 10 10 C 1.53174 * 109.54219 * 294.55372 * 9 8 7 11 11 C 1.53097 * 109.16265 * 183.15096 * 10 9 8 12 12 O 1.42895 * 109.41512 * 57.60568 * 11 10 9 13 13 C 1.42907 * 114.10373 * 298.84524 * 12 11 10 14 14 C 1.53096 * 109.41333 * 61.15445 * 13 12 11 15 15 C 1.39722 * 120.40380 * 0.02671 * 5 4 3 16 16 C 1.36229 * 120.42709 * 359.68874 * 15 5 4 17 17 C 1.40849 * 120.01256 * 0.56263 * 16 15 5 18 18 C 1.40960 * 120.20496 * 179.73855 * 17 16 15 19 19 H 1.07995 * 120.00566 * 208.73818 * 18 17 16 20 20 C 1.39850 * 119.99825 * 28.73320 * 18 17 16 21 21 N 1.30943 * 120.00089 * 197.90768 * 20 18 17 22 22 Si 1.86803 * 119.99898 * 17.90919 * 20 18 17 23 23 H 1.48493 * 109.47363 * 269.99826 * 22 20 18 24 24 H 1.48504 * 109.46949 * 29.99952 * 22 20 18 25 25 H 1.48504 * 109.47203 * 149.99629 * 22 20 18 26 26 H 1.09004 * 109.47481 * 300.00111 * 1 2 3 27 27 H 1.09001 * 109.46775 * 60.00001 * 1 2 3 28 28 H 1.08998 * 109.47712 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.01134 * 0.02562 * 4 3 2 30 30 H 0.97004 * 119.99571 * 0.02562 * 6 5 4 31 31 H 1.09007 * 109.46670 * 300.00572 * 7 6 5 32 32 H 1.09002 * 109.46633 * 60.00068 * 7 6 5 33 33 H 1.09007 * 109.47319 * 299.99543 * 8 7 6 34 34 H 1.09002 * 109.47846 * 60.00179 * 8 7 6 35 35 H 1.09007 * 109.54319 * 54.82036 * 9 8 7 36 36 H 1.08997 * 109.52621 * 303.05490 * 10 9 8 37 37 H 1.09003 * 109.52380 * 63.24575 * 10 9 8 38 38 H 1.09008 * 109.47603 * 297.62474 * 11 10 9 39 39 H 1.08997 * 109.47745 * 177.59678 * 11 10 9 40 40 H 1.09000 * 109.47369 * 301.17339 * 13 12 11 41 41 H 1.08996 * 109.49175 * 181.14392 * 13 12 11 42 42 H 1.08991 * 109.51867 * 182.48859 * 14 13 12 43 43 H 1.09000 * 109.52314 * 62.29702 * 14 13 12 44 44 H 1.08004 * 119.78539 * 179.97438 * 15 5 4 45 45 H 1.08007 * 119.99109 * 180.30105 * 16 15 5 46 46 H 0.96999 * 120.00529 * 355.43525 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3692 -0.0005 5 6 1.9345 3.6071 -0.0011 6 7 1.1786 4.7726 -0.0021 7 6 1.8444 6.0776 -0.0033 8 6 0.7913 7.1873 -0.0037 9 6 1.4866 8.5503 -0.0055 10 6 2.2547 8.7354 1.3068 11 6 2.8816 10.1319 1.3294 12 8 1.8563 11.1154 1.1767 13 6 1.1355 11.0209 -0.0536 14 6 0.4384 9.6601 -0.1318 15 6 3.3296 3.6844 -0.0016 16 6 4.0834 2.5497 0.0047 17 6 3.4575 1.2879 -0.0001 18 6 4.2336 0.1112 0.0009 19 1 3.8482 -0.7903 -0.4519 20 6 5.5028 0.1112 0.5882 21 7 6.3588 -0.8360 0.2974 22 14 5.9769 1.4626 1.7877 23 1 6.5937 2.5904 1.0442 24 1 4.7639 1.9422 2.4976 25 1 6.9498 0.9294 2.7748 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.2187 2.3169 -0.0005 30 1 0.2099 4.7223 -0.0021 31 1 2.4673 6.1684 0.8867 32 1 2.4672 6.1668 -0.8934 33 1 0.1681 7.0967 -0.8935 34 1 0.1687 7.0979 0.8866 35 1 2.1789 8.6053 -0.8457 36 1 1.5695 8.6301 2.1479 37 1 3.0396 7.9825 1.3787 38 1 3.5969 10.2225 0.5118 39 1 3.3938 10.2850 2.2793 40 1 1.8279 11.1232 -0.8892 41 1 0.3898 11.8145 -0.1002 42 1 -0.0755 9.5686 -1.0886 43 1 -0.2834 9.5734 0.6803 44 1 3.8134 4.6500 -0.0025 45 1 5.1614 2.6176 0.0091 46 1 6.0910 -1.5734 -0.2730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162221297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:11 Heat of formation + Delta-G solvation = -99.936316 kcal Electronic energy + Delta-G solvation = -24751.694911 eV Core-core repulsion = 21218.667768 eV Total energy + Delta-G solvation = -3533.027143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.76180 -40.37085 -38.67876 -37.16014 -35.85210 -34.53653 -32.08408 -31.78372 -30.81385 -29.61430 -28.13372 -26.18509 -25.01980 -24.36096 -23.46499 -22.59710 -21.52564 -20.93444 -20.01980 -18.77511 -17.46221 -17.08061 -16.92935 -16.43982 -16.40900 -16.23685 -15.90908 -15.84461 -15.65394 -15.51494 -14.99251 -14.90117 -14.54544 -14.40674 -13.73004 -13.55889 -13.22424 -13.14841 -13.03406 -12.78215 -12.54711 -12.41815 -12.23961 -12.18632 -12.08262 -11.91133 -11.73100 -11.60672 -11.24668 -11.20462 -11.13542 -10.91595 -10.42813 -10.28323 -9.21880 -9.07063 -8.33498 -6.12479 0.82174 0.97609 1.39041 1.58715 1.79351 2.28045 2.68187 2.75248 2.86764 3.01784 3.53561 3.72008 3.78200 3.93110 4.10853 4.17919 4.28206 4.29767 4.38127 4.40785 4.43210 4.43631 4.51291 4.62524 4.66541 4.68460 4.77171 4.81822 4.83734 4.89774 4.96202 4.98849 5.06478 5.10141 5.18955 5.20008 5.30081 5.33291 5.48162 5.58771 5.68096 5.82633 6.04829 6.29609 6.30329 6.57155 6.71672 6.87924 7.08594 7.23446 8.19823 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.003169 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.074139 B = 8834.779878 C =10189.521242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.342 6.342 3 C 0.059 3.941 4 C -0.241 4.241 5 C 0.160 3.840 6 N -0.747 5.747 7 C 0.129 3.871 8 C -0.110 4.110 9 C -0.084 4.084 10 C -0.153 4.153 11 C 0.057 3.943 12 O -0.407 6.407 13 C 0.054 3.946 14 C -0.146 4.146 15 C -0.187 4.187 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.540 4.540 19 H 0.032 0.968 20 C -0.002 4.002 21 N -0.872 5.872 22 Si 1.109 2.891 23 H -0.254 1.254 24 H -0.265 1.265 25 H -0.285 1.285 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.399 0.601 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.125 0.875 45 H 0.109 0.891 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 22.485 0.205 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.257 6.257 3 C 0.013 3.987 4 C -0.264 4.264 5 C 0.059 3.941 6 N -0.380 5.380 7 C 0.005 3.995 8 C -0.148 4.148 9 C -0.103 4.103 10 C -0.191 4.191 11 C -0.020 4.020 12 O -0.326 6.326 13 C -0.022 4.022 14 C -0.183 4.183 15 C -0.209 4.209 16 C -0.199 4.199 17 C -0.001 4.001 18 C -0.572 4.572 19 H 0.050 0.950 20 C -0.210 4.210 21 N -0.499 5.499 22 Si 0.930 3.070 23 H -0.180 1.180 24 H -0.190 1.190 25 H -0.212 1.212 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.126 0.874 29 H 0.152 0.848 30 H 0.234 0.766 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.143 0.857 45 H 0.126 0.874 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.518 23.062 1.211 25.807 hybrid contribution -1.547 -1.788 -1.453 2.775 sum -13.065 21.274 -0.242 24.966 Atomic orbital electron populations 1.23137 0.78176 1.04273 1.01420 1.85992 1.21985 1.28128 1.89554 1.19210 0.91903 0.83823 1.03748 1.20452 0.99072 0.90597 1.16310 1.17199 0.90351 0.86244 1.00330 1.44054 1.07285 1.01906 1.84796 1.21321 0.95840 0.81945 1.00411 1.21670 0.97464 0.92554 1.03088 1.21114 0.97373 0.93845 0.97965 1.22305 1.00829 0.97832 0.98140 1.22681 0.89441 0.87239 1.02591 1.87897 1.50376 1.54314 1.40054 1.22735 0.95580 0.97740 0.86126 1.22203 0.98223 0.94457 1.03441 1.20123 0.92185 0.97712 1.10919 1.20603 0.98706 0.91763 1.08852 1.17277 0.89617 0.93747 0.99477 1.20086 1.02887 0.97293 1.36938 0.95007 1.28235 0.91710 1.03017 0.98073 1.70664 1.35316 1.11321 1.32608 0.83176 0.76722 0.72606 0.74462 1.18012 1.18984 1.21239 0.92368 0.92487 0.87446 0.84785 0.76600 0.93101 0.93391 0.90557 0.91161 0.90533 0.91559 0.90419 0.92538 0.88365 0.92569 0.87873 0.89486 0.91401 0.85727 0.87387 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.81 113.37 1.11 1.89 16 2 O -0.34 -16.06 9.83 -89.86 -0.88 -16.94 16 3 C 0.06 2.86 6.71 23.02 0.15 3.02 16 4 C -0.24 -9.54 8.86 22.46 0.20 -9.34 16 5 C 0.16 5.92 6.66 38.61 0.26 6.17 16 6 N -0.75 -19.99 5.70 -339.11 -1.93 -21.92 16 7 C 0.13 2.78 4.65 86.38 0.40 3.18 16 8 C -0.11 -1.65 4.80 30.59 0.15 -1.50 16 9 C -0.08 -1.14 2.27 -10.67 -0.02 -1.17 16 10 C -0.15 -2.29 5.10 30.68 0.16 -2.14 16 11 C 0.06 0.85 6.84 72.01 0.49 1.34 16 12 O -0.41 -7.30 10.76 -148.98 -1.60 -8.90 16 13 C 0.05 0.69 6.84 72.01 0.49 1.19 16 14 C -0.15 -1.71 5.42 30.69 0.17 -1.55 16 15 C -0.19 -7.59 9.22 22.16 0.20 -7.38 16 16 C -0.18 -8.71 7.21 22.44 0.16 -8.54 16 17 C 0.00 0.13 5.15 -21.18 -0.11 0.02 16 18 C -0.54 -32.91 9.05 23.33 0.21 -32.70 16 19 H 0.03 2.11 7.88 -2.91 -0.02 2.09 16 20 C 0.00 -0.13 5.41 85.22 0.46 0.33 16 21 N -0.87 -52.80 13.66 21.82 0.30 -52.50 16 22 Si 1.11 52.31 24.90 68.60 1.71 54.02 16 23 H -0.25 -10.82 6.43 99.48 0.64 -10.18 16 24 H -0.27 -12.30 7.04 99.48 0.70 -11.60 16 25 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 26 H 0.06 1.63 7.66 -2.38 -0.02 1.61 16 27 H 0.06 1.59 7.66 -2.39 -0.02 1.57 16 28 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.13 4.33 6.29 -2.91 -0.02 4.31 16 30 H 0.40 8.90 8.47 -92.71 -0.79 8.12 16 31 H 0.05 1.16 6.44 -2.38 -0.02 1.14 16 32 H 0.05 1.09 7.92 -2.39 -0.02 1.07 16 33 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.19 6.75 -2.39 -0.02 1.18 16 38 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.12 4.30 6.67 -2.91 -0.02 4.28 16 45 H 0.11 5.22 4.39 -2.91 -0.01 5.21 16 46 H 0.27 16.32 8.73 -92.71 -0.81 15.51 16 Total: -1.00 -71.28 357.88 2.15 -69.13 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.08 Total: 24.31 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 4.49 Total: -47.18 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.64 Total: -74.43 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -2.49 Total: -25.85 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 1.71 Total: 54.02 kcal Total: -71.28 2.15 -69.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162221297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.808 kcal (2) G-P(sol) polarization free energy of solvation -71.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds