Wall clock time and date at job start Tue Mar 31 2020 09:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42894 * 109.47816 * 2 1 4 4 C 1.35893 * 117.00131 * 180.02562 * 3 2 1 5 5 C 1.38661 * 119.98926 * 180.27534 * 4 3 2 6 6 C 1.38830 * 119.98093 * 180.27483 * 5 4 3 7 7 N 1.39663 * 120.02033 * 179.72150 * 6 5 4 8 8 C 1.46501 * 120.00287 * 179.72676 * 7 6 5 9 9 H 1.09005 * 109.40894 * 324.86289 * 8 7 6 10 10 C 1.52959 * 109.35527 * 84.67979 * 8 7 6 11 11 C 1.53659 * 109.32394 * 183.79867 * 10 8 7 12 12 C 1.51267 * 108.31176 * 305.14254 * 11 10 8 13 13 C 1.37884 * 120.85009 * 231.38200 * 12 11 10 14 14 N 1.31514 * 119.99707 * 180.28381 * 13 12 11 15 15 Si 1.86796 * 119.99956 * 0.55604 * 13 12 11 16 16 H 1.48497 * 109.47172 * 179.72730 * 15 13 12 17 17 H 1.48506 * 109.47132 * 299.72429 * 15 13 12 18 18 H 1.48501 * 109.47173 * 59.72550 * 15 13 12 19 19 C 1.51269 * 118.30064 * 51.65902 * 12 11 10 20 20 C 1.52951 * 109.41621 * 205.00441 * 8 7 6 21 21 C 1.38871 * 119.96048 * 359.45196 * 6 5 4 22 22 C 1.38610 * 119.98373 * 0.27600 * 21 6 5 23 23 O 1.35896 * 119.99520 * 179.97438 * 22 21 6 24 24 C 1.42896 * 117.00150 * 179.97438 * 23 22 21 25 25 C 1.38671 * 119.99547 * 0.02562 * 4 3 2 26 26 H 1.08994 * 109.47424 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46918 * 300.00272 * 1 2 3 28 28 H 1.08999 * 109.46902 * 59.99567 * 1 2 3 29 29 H 1.09008 * 109.47108 * 240.00079 * 2 1 3 30 30 H 1.08999 * 109.46902 * 120.00433 * 2 1 3 31 31 H 1.08004 * 120.01426 * 0.02562 * 5 4 3 32 32 H 0.96999 * 119.99887 * 359.73376 * 7 6 5 33 33 H 1.08995 * 109.48342 * 303.65390 * 10 8 7 34 34 H 1.09000 * 109.47593 * 63.69610 * 10 8 7 35 35 H 1.09000 * 109.69110 * 185.52159 * 11 10 8 36 36 H 1.08994 * 109.78566 * 64.81858 * 11 10 8 37 37 H 0.97005 * 119.99656 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.62841 * 68.11279 * 19 12 11 39 39 H 1.08999 * 109.62883 * 188.49874 * 19 12 11 40 40 H 1.08997 * 109.48349 * 56.38465 * 20 8 7 41 41 H 1.09010 * 109.48263 * 296.34301 * 20 8 7 42 42 H 1.08006 * 120.00937 * 180.29822 * 21 6 5 43 43 H 1.09008 * 109.46977 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.47072 * 299.99651 * 24 23 22 45 45 H 1.08994 * 109.47487 * 60.00190 * 24 23 22 46 46 H 1.08007 * 119.97754 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5251 -0.0005 5 6 3.8835 2.8064 0.0052 6 6 5.2599 2.9880 -0.0011 7 7 5.7945 4.2783 -0.0012 8 6 7.2470 4.4695 -0.0019 9 1 7.7161 3.6831 0.5896 10 6 7.7664 4.4031 -1.4390 11 6 9.2994 4.5084 -1.4310 12 6 9.6854 5.7675 -0.6868 13 6 10.5512 6.6827 -1.2471 14 7 10.8798 7.7691 -0.5828 15 14 11.2514 6.3832 -2.9528 16 1 12.1439 7.5097 -3.3263 17 1 12.0262 5.1163 -2.9543 18 1 10.1407 6.2853 -3.9336 19 6 9.1022 5.9938 0.6905 20 6 7.5807 5.8319 0.6079 21 6 6.1049 1.8860 -0.0017 22 6 5.5735 0.6057 -0.0017 23 8 6.4002 -0.4729 -0.0028 24 6 5.7842 -1.7623 -0.0022 25 6 4.1982 0.4252 -0.0016 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8932 -0.5139 0.8899 31 1 3.2258 3.6631 0.0105 32 1 5.2040 5.0479 -0.0008 33 1 7.4706 3.4556 -1.8891 34 1 7.3459 5.2269 -2.0158 35 1 9.6693 4.5603 -2.4550 36 1 9.7261 3.6406 -0.9283 37 1 11.4892 8.4128 -0.9769 38 1 9.5111 5.2610 1.3862 39 1 9.3482 6.9994 1.0316 40 1 7.1533 5.8970 1.6085 41 1 7.1646 6.6219 -0.0175 42 1 7.1758 2.0263 -0.0017 43 1 6.5550 -2.5331 -0.0027 44 1 5.1651 -1.8688 0.8885 45 1 5.1630 -1.8687 -0.8914 46 1 3.7848 -0.5726 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167846237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:10 Heat of formation + Delta-G solvation = -67.797173 kcal Electronic energy + Delta-G solvation = -25147.963153 eV Core-core repulsion = 21616.329667 eV Total energy + Delta-G solvation = -3531.633486 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43216 -38.84182 -38.21954 -36.29348 -33.78166 -32.00117 -31.62611 -29.77277 -29.61480 -28.78851 -27.14161 -26.55967 -23.74370 -22.60160 -22.03073 -21.31692 -20.72320 -19.39702 -18.69508 -16.85522 -16.44286 -16.26982 -15.97015 -15.64307 -15.61234 -15.11142 -14.64706 -14.44954 -14.41669 -13.58442 -13.30018 -13.06591 -12.84744 -12.77160 -12.57512 -12.35190 -12.18087 -12.12851 -11.89910 -11.61789 -11.34397 -11.17595 -11.10300 -11.01935 -10.93956 -10.67952 -10.52354 -10.14234 -9.96117 -9.73383 -9.25337 -8.96332 -8.65206 -8.48195 -7.87084 -7.14704 -6.11420 -4.02264 1.72463 1.78844 3.03615 3.29041 3.29670 3.35952 3.37701 3.97958 4.03622 4.38352 4.67275 4.74466 4.92522 4.96358 5.05080 5.14059 5.16236 5.19300 5.33419 5.38312 5.45316 5.51265 5.57356 5.62592 5.74977 5.81916 5.87154 6.15911 6.29230 6.46997 6.49239 6.50267 6.59669 6.65817 6.72858 6.87178 6.89941 7.02397 7.07941 7.25022 7.40395 7.58024 7.63110 7.69602 7.75441 7.83320 8.13150 8.36607 8.94975 9.53506 10.98243 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.003163 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.673981 B = 8849.776728 C = 9471.345734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.316 6.316 4 C 0.205 3.795 5 C -0.271 4.271 6 C 0.298 3.702 7 N -0.729 5.729 8 C 0.157 3.843 9 H 0.072 0.928 10 C -0.119 4.119 11 C -0.009 4.009 12 C -0.491 4.491 13 C 0.077 3.923 14 N -0.890 5.890 15 Si 0.891 3.109 16 H -0.292 1.292 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.013 3.987 20 C -0.114 4.114 21 C -0.262 4.262 22 C 0.204 3.796 23 O -0.314 6.314 24 C 0.030 3.970 25 C -0.360 4.360 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.397 0.603 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.020 0.980 37 H 0.265 0.735 38 H 0.006 0.994 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.054 0.946 42 H 0.135 0.865 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 -16.030 1.383 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.230 6.230 4 C 0.159 3.841 5 C -0.295 4.295 6 C 0.189 3.811 7 N -0.353 5.353 8 C 0.054 3.946 9 H 0.090 0.910 10 C -0.158 4.158 11 C -0.047 4.047 12 C -0.509 4.509 13 C -0.126 4.126 14 N -0.528 5.528 15 Si 0.719 3.281 16 H -0.219 1.219 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.025 4.025 20 C -0.152 4.152 21 C -0.286 4.286 22 C 0.158 3.842 23 O -0.227 6.227 24 C -0.065 4.065 25 C -0.382 4.382 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.232 0.768 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.024 0.976 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.153 0.847 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.179 -15.684 1.385 22.576 hybrid contribution -0.018 -0.215 -1.026 1.048 sum -16.197 -15.899 0.359 22.699 Atomic orbital electron populations 1.21776 0.92963 1.02647 1.03527 1.22712 0.95548 0.82391 1.01257 1.86040 1.19565 1.28884 1.88467 1.18188 0.81232 0.93005 0.91713 1.19534 0.93070 0.95082 1.21811 1.17088 0.90330 0.85606 0.88033 1.45320 1.07799 1.03407 1.78808 1.21074 0.77252 0.98991 0.97297 0.90957 1.22085 0.99164 0.99289 0.95298 1.19683 0.91230 0.97446 0.96387 1.20036 1.26196 1.03391 1.01325 1.24838 0.95680 0.94619 0.97474 1.69821 1.34563 1.10329 1.38045 0.86658 0.79055 0.77555 0.84824 1.21892 1.19979 1.19983 1.19337 0.88425 0.99046 0.95677 1.21905 1.01444 0.94365 0.97493 1.19780 1.00580 0.88366 1.19874 1.18324 0.87850 0.86680 0.91383 1.86092 1.34783 1.13445 1.88335 1.22992 0.99590 0.82874 1.01058 1.20825 0.92994 0.98454 1.25915 0.90562 0.91534 0.91538 0.92238 0.92235 0.85695 0.76833 0.94377 0.92817 0.95615 0.96175 0.92512 0.97590 0.92092 0.94535 0.92744 0.84689 0.88476 0.92928 0.92919 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.51 5.46 37.16 0.20 0.71 16 3 O -0.32 -4.07 10.13 -19.40 -0.20 -4.27 16 4 C 0.20 2.95 6.68 -39.27 -0.26 2.68 16 5 C -0.27 -4.10 9.83 -39.21 -0.39 -4.49 16 6 C 0.30 4.85 6.63 -83.84 -0.56 4.29 16 7 N -0.73 -11.88 5.24 -52.24 -0.27 -12.16 16 8 C 0.16 2.96 2.05 -67.98 -0.14 2.83 16 9 H 0.07 1.42 6.48 -51.93 -0.34 1.08 16 10 C -0.12 -2.43 5.43 -26.41 -0.14 -2.58 16 11 C -0.01 -0.22 5.62 -27.26 -0.15 -0.37 16 12 C -0.49 -12.73 5.50 -98.92 -0.54 -13.28 16 13 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 14 N -0.89 -25.40 12.73 55.43 0.71 -24.69 16 15 Si 0.89 21.31 26.80 -169.99 -4.56 16.75 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.01 0.32 5.97 -27.48 -0.16 0.15 16 20 C -0.11 -2.31 5.40 -26.64 -0.14 -2.45 16 21 C -0.26 -4.41 8.73 -39.21 -0.34 -4.76 16 22 C 0.20 3.13 6.68 -39.27 -0.26 2.87 16 23 O -0.31 -4.46 10.49 -19.41 -0.20 -4.66 16 24 C 0.03 0.28 9.81 101.05 0.99 1.27 16 25 C -0.36 -4.91 8.02 -39.25 -0.31 -5.22 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.49 7.66 -51.92 -0.40 0.09 16 30 H 0.06 0.48 7.66 -51.93 -0.40 0.09 16 31 H 0.13 1.74 8.06 -52.48 -0.42 1.31 16 32 H 0.40 5.80 8.61 -40.82 -0.35 5.45 16 33 H 0.04 0.74 7.70 -51.93 -0.40 0.34 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.03 0.59 5.16 -51.93 -0.27 0.32 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 42 H 0.14 2.41 6.14 -52.48 -0.32 2.09 16 43 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 45 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 46 H 0.12 1.36 4.51 -52.48 -0.24 1.12 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -29.31 360.25 -8.26 -37.57 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.24 Total: 3.03 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -1.93 Total: -17.00 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.43 Total: -36.85 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.40 Total: -8.93 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.56 Total: 16.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.31 -8.26 -37.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.228 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds