Wall clock time and date at job start Tue Mar 31 2020 09:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42894 * 109.47816 * 2 1 4 4 C 1.35893 * 117.00131 * 180.02562 * 3 2 1 5 5 C 1.38661 * 119.98926 * 180.27534 * 4 3 2 6 6 C 1.38830 * 119.98093 * 180.27483 * 5 4 3 7 7 N 1.39663 * 120.02033 * 179.72150 * 6 5 4 8 8 C 1.46501 * 120.00287 * 179.72676 * 7 6 5 9 9 H 1.09005 * 109.40894 * 324.86289 * 8 7 6 10 10 C 1.52959 * 109.35527 * 84.67979 * 8 7 6 11 11 C 1.53659 * 109.32394 * 183.79867 * 10 8 7 12 12 C 1.51267 * 108.31176 * 305.14254 * 11 10 8 13 13 C 1.37884 * 120.85009 * 231.38200 * 12 11 10 14 14 N 1.31514 * 119.99707 * 180.28381 * 13 12 11 15 15 Si 1.86796 * 119.99956 * 0.55604 * 13 12 11 16 16 H 1.48497 * 109.47172 * 179.72730 * 15 13 12 17 17 H 1.48506 * 109.47132 * 299.72429 * 15 13 12 18 18 H 1.48501 * 109.47173 * 59.72550 * 15 13 12 19 19 C 1.51269 * 118.30064 * 51.65902 * 12 11 10 20 20 C 1.52951 * 109.41621 * 205.00441 * 8 7 6 21 21 C 1.38871 * 119.96048 * 359.45196 * 6 5 4 22 22 C 1.38610 * 119.98373 * 0.27600 * 21 6 5 23 23 O 1.35896 * 119.99520 * 179.97438 * 22 21 6 24 24 C 1.42896 * 117.00150 * 179.97438 * 23 22 21 25 25 C 1.38671 * 119.99547 * 0.02562 * 4 3 2 26 26 H 1.08994 * 109.47424 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46918 * 300.00272 * 1 2 3 28 28 H 1.08999 * 109.46902 * 59.99567 * 1 2 3 29 29 H 1.09008 * 109.47108 * 240.00079 * 2 1 3 30 30 H 1.08999 * 109.46902 * 120.00433 * 2 1 3 31 31 H 1.08004 * 120.01426 * 0.02562 * 5 4 3 32 32 H 0.96999 * 119.99887 * 359.73376 * 7 6 5 33 33 H 1.08995 * 109.48342 * 303.65390 * 10 8 7 34 34 H 1.09000 * 109.47593 * 63.69610 * 10 8 7 35 35 H 1.09000 * 109.69110 * 185.52159 * 11 10 8 36 36 H 1.08994 * 109.78566 * 64.81858 * 11 10 8 37 37 H 0.97005 * 119.99656 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.62841 * 68.11279 * 19 12 11 39 39 H 1.08999 * 109.62883 * 188.49874 * 19 12 11 40 40 H 1.08997 * 109.48349 * 56.38465 * 20 8 7 41 41 H 1.09010 * 109.48263 * 296.34301 * 20 8 7 42 42 H 1.08006 * 120.00937 * 180.29822 * 21 6 5 43 43 H 1.09008 * 109.46977 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.47072 * 299.99651 * 24 23 22 45 45 H 1.08994 * 109.47487 * 60.00190 * 24 23 22 46 46 H 1.08007 * 119.97754 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5251 -0.0005 5 6 3.8835 2.8064 0.0052 6 6 5.2599 2.9880 -0.0011 7 7 5.7945 4.2783 -0.0012 8 6 7.2470 4.4695 -0.0019 9 1 7.7161 3.6831 0.5896 10 6 7.7664 4.4031 -1.4390 11 6 9.2994 4.5084 -1.4310 12 6 9.6854 5.7675 -0.6868 13 6 10.5512 6.6827 -1.2471 14 7 10.8798 7.7691 -0.5828 15 14 11.2514 6.3832 -2.9528 16 1 12.1439 7.5097 -3.3263 17 1 12.0262 5.1163 -2.9543 18 1 10.1407 6.2853 -3.9336 19 6 9.1022 5.9938 0.6905 20 6 7.5807 5.8319 0.6079 21 6 6.1049 1.8860 -0.0017 22 6 5.5735 0.6057 -0.0017 23 8 6.4002 -0.4729 -0.0028 24 6 5.7842 -1.7623 -0.0022 25 6 4.1982 0.4252 -0.0016 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8932 -0.5139 0.8899 31 1 3.2258 3.6631 0.0105 32 1 5.2040 5.0479 -0.0008 33 1 7.4706 3.4556 -1.8891 34 1 7.3459 5.2269 -2.0158 35 1 9.6693 4.5603 -2.4550 36 1 9.7261 3.6406 -0.9283 37 1 11.4892 8.4128 -0.9769 38 1 9.5111 5.2610 1.3862 39 1 9.3482 6.9994 1.0316 40 1 7.1533 5.8970 1.6085 41 1 7.1646 6.6219 -0.0175 42 1 7.1758 2.0263 -0.0017 43 1 6.5550 -2.5331 -0.0027 44 1 5.1651 -1.8688 0.8885 45 1 5.1630 -1.8687 -0.8914 46 1 3.7848 -0.5726 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167846237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:09 Heat of formation + Delta-G solvation = -84.825494 kcal Electronic energy + Delta-G solvation = -25148.701556 eV Core-core repulsion = 21616.329667 eV Total energy + Delta-G solvation = -3532.371889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49829 -39.81554 -39.60004 -37.69043 -35.29397 -33.47132 -32.63871 -31.51894 -30.68638 -30.15877 -28.29478 -27.83960 -24.68670 -23.85344 -23.61147 -22.94421 -21.87894 -21.05727 -19.77347 -18.16830 -17.81508 -17.20440 -17.08711 -16.88894 -16.50919 -16.42478 -16.34225 -15.82067 -15.43075 -15.12286 -14.68273 -14.42855 -14.17172 -14.05670 -13.77645 -13.54051 -13.37926 -13.26246 -13.04556 -12.89013 -12.76254 -12.69098 -12.47841 -12.17080 -12.16089 -11.98893 -11.94390 -11.81871 -11.60758 -11.42905 -10.87368 -10.65017 -10.54980 -10.26160 -8.98664 -8.39887 -8.17669 -6.11178 0.57919 0.64584 1.39073 1.40211 1.47884 2.05597 2.37987 2.40216 2.75056 2.88060 3.12257 4.01803 4.04888 4.08243 4.10522 4.17442 4.21817 4.31986 4.35509 4.40895 4.40970 4.46222 4.50215 4.61516 4.72053 4.73740 4.81640 4.94177 4.96613 4.96822 5.05997 5.08898 5.21771 5.22201 5.25759 5.31327 5.39833 5.41494 5.54150 5.58170 5.63597 5.76044 5.83440 6.27834 6.34407 6.39201 6.63837 6.90505 6.94876 7.46671 8.93168 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.003163 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.673981 B = 8849.776728 C = 9471.345734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.327 6.327 4 C 0.204 3.796 5 C -0.279 4.279 6 C 0.289 3.711 7 N -0.727 5.727 8 C 0.173 3.827 9 H 0.066 0.934 10 C -0.111 4.111 11 C -0.012 4.012 12 C -0.499 4.499 13 C 0.024 3.976 14 N -0.929 5.929 15 Si 0.940 3.060 16 H -0.294 1.294 17 H -0.268 1.268 18 H -0.267 1.267 19 C 0.009 3.991 20 C -0.102 4.102 21 C -0.287 4.287 22 C 0.200 3.800 23 O -0.335 6.335 24 C 0.019 3.981 25 C -0.351 4.351 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.406 0.594 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.025 0.975 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.002 0.998 39 H 0.031 0.969 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.797 -18.653 0.819 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.241 6.241 4 C 0.157 3.843 5 C -0.303 4.303 6 C 0.182 3.818 7 N -0.353 5.353 8 C 0.068 3.932 9 H 0.084 0.916 10 C -0.150 4.150 11 C -0.050 4.050 12 C -0.519 4.519 13 C -0.174 4.174 14 N -0.569 5.569 15 Si 0.767 3.233 16 H -0.220 1.220 17 H -0.193 1.193 18 H -0.192 1.192 19 C -0.029 4.029 20 C -0.140 4.140 21 C -0.311 4.311 22 C 0.153 3.847 23 O -0.248 6.248 24 C -0.075 4.075 25 C -0.372 4.372 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.242 0.758 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.020 0.980 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.444 -18.349 0.818 26.029 hybrid contribution 0.580 0.419 -0.781 1.059 sum -17.864 -17.930 0.037 25.310 Atomic orbital electron populations 1.21812 0.91327 1.04239 1.03197 1.23083 0.96906 0.80752 1.02284 1.86049 1.18508 1.31462 1.88066 1.18294 0.82179 0.92893 0.90931 1.19659 0.92657 0.96084 1.21873 1.17124 0.90824 0.85119 0.88727 1.44978 1.06510 1.04081 1.79725 1.20661 0.78947 0.97587 0.95964 0.91628 1.21952 0.97022 0.99574 0.96417 1.19704 0.93295 0.96089 0.95924 1.20627 1.25265 1.04025 1.01942 1.25559 0.96471 0.94746 1.00646 1.69951 1.35923 1.11463 1.39594 0.85846 0.78617 0.77472 0.81370 1.22018 1.19297 1.19205 1.19297 0.91411 0.97101 0.95078 1.21683 0.98357 0.95233 0.98735 1.19808 0.99884 0.89642 1.21742 1.18414 0.88635 0.86667 0.90974 1.86071 1.35848 1.14778 1.88102 1.23355 1.00847 0.81024 1.02324 1.21059 0.92150 0.99693 1.24347 0.87997 0.91845 0.91911 0.91189 0.91107 0.84847 0.75821 0.93216 0.93453 0.95626 0.95914 0.92776 0.98006 0.95061 0.92653 0.93249 0.86428 0.86359 0.91539 0.91624 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.04 0.65 5.46 71.98 0.39 1.04 16 3 O -0.33 -7.62 10.13 -92.35 -0.94 -8.55 16 4 C 0.20 5.42 6.68 22.47 0.15 5.57 16 5 C -0.28 -8.03 9.83 22.51 0.22 -7.81 16 6 C 0.29 9.13 6.63 38.19 0.25 9.39 16 7 N -0.73 -23.05 5.24 -319.20 -1.67 -24.72 16 8 C 0.17 6.45 2.05 44.96 0.09 6.54 16 9 H 0.07 2.56 6.48 -2.38 -0.02 2.55 16 10 C -0.11 -4.44 5.43 30.80 0.17 -4.27 16 11 C -0.01 -0.55 5.62 30.25 0.17 -0.38 16 12 C -0.50 -26.26 5.50 -16.17 -0.09 -26.35 16 13 C 0.02 1.34 5.46 84.66 0.46 1.80 16 14 N -0.93 -54.62 12.73 21.45 0.27 -54.35 16 15 Si 0.94 44.00 26.80 68.60 1.84 45.84 16 16 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 C 0.01 0.45 5.97 30.11 0.18 0.63 16 20 C -0.10 -4.13 5.40 30.66 0.17 -3.96 16 21 C -0.29 -9.49 8.73 22.51 0.20 -9.30 16 22 C 0.20 5.82 6.68 22.47 0.15 5.97 16 23 O -0.33 -8.94 10.49 -92.38 -0.97 -9.91 16 24 C 0.02 0.29 9.81 113.37 1.11 1.40 16 25 C -0.35 -8.66 8.02 22.49 0.18 -8.48 16 26 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.90 7.66 -2.38 -0.02 0.88 16 30 H 0.07 0.89 7.66 -2.39 -0.02 0.88 16 31 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.41 11.40 8.61 -92.71 -0.80 10.60 16 33 H 0.05 1.88 7.70 -2.39 -0.02 1.86 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.03 1.16 5.16 -2.39 -0.01 1.14 16 36 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 38 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.03 1.72 7.07 -2.39 -0.02 1.70 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.12 4.23 6.14 -2.91 -0.02 4.21 16 43 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 45 H 0.07 0.84 7.65 -2.39 -0.02 0.83 16 46 H 0.15 2.75 4.51 -2.91 -0.01 2.74 16 Total: -1.00 -63.82 360.25 3.26 -60.55 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.19 Total: 20.15 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 4.55 Total: -29.01 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.40 Total: -79.07 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.91 Total: -18.46 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.84 Total: 45.84 kcal Total: -63.82 3.26 -60.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.271 kcal (2) G-P(sol) polarization free energy of solvation -63.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds