Wall clock time and date at job start Tue Mar 31 2020 10:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.46866 * 2 1 4 4 C 1.34757 * 117.00055 * 180.02562 * 3 2 1 5 5 O 1.21522 * 120.00034 * 359.97438 * 4 3 2 6 6 C 1.47379 * 120.00329 * 180.02562 * 4 3 2 7 7 C 1.39858 * 120.07380 * 353.72060 * 6 4 3 8 8 C 1.36575 * 120.05373 * 179.73696 * 7 6 4 9 9 C 1.50695 * 119.90233 * 180.23799 * 8 7 6 10 10 C 1.39243 * 120.19900 * 0.52245 * 8 7 6 11 11 N 1.39014 * 119.92686 * 179.73466 * 10 8 7 12 12 C 1.46498 * 120.00261 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47259 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47357 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47443 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99883 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00091 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99876 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00040 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47098 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46841 * 120.00309 * 19 17 15 22 22 H 1.48499 * 109.46907 * 239.99958 * 19 17 15 23 23 C 1.39241 * 120.14751 * 359.75655 * 10 8 7 24 24 C 1.37635 * 119.94751 * 359.97438 * 23 10 8 25 25 C 1.50701 * 120.10095 * 180.02562 * 24 23 10 26 26 H 1.09000 * 109.46735 * 299.99951 * 1 2 3 27 27 H 1.09000 * 109.47398 * 60.00462 * 1 2 3 28 28 H 1.08998 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47466 * 119.99877 * 2 1 3 30 30 H 1.09004 * 109.47204 * 240.00082 * 2 1 3 31 31 H 1.07998 * 119.97448 * 0.02562 * 7 6 4 32 32 H 1.09002 * 109.47295 * 270.28143 * 9 8 7 33 33 H 1.08999 * 109.47266 * 30.28099 * 9 8 7 34 34 H 1.08999 * 109.47210 * 150.28555 * 9 8 7 35 35 H 0.97003 * 119.99641 * 0.02709 * 11 10 8 36 36 H 1.09000 * 109.47243 * 300.00851 * 12 11 10 37 37 H 1.09005 * 109.46867 * 60.00535 * 12 11 10 38 38 H 1.09009 * 109.47193 * 300.00250 * 13 12 11 39 39 H 1.08991 * 109.47275 * 60.00327 * 13 12 11 40 40 H 1.09000 * 109.46822 * 300.00336 * 14 13 12 41 41 H 1.09005 * 109.47190 * 59.99961 * 14 13 12 42 42 H 0.96995 * 119.99756 * 179.97438 * 18 17 15 43 43 H 1.07994 * 120.02485 * 179.97438 * 23 10 8 44 44 H 1.08997 * 109.47281 * 263.43836 * 25 24 23 45 45 H 1.08994 * 109.47035 * 23.43956 * 25 24 23 46 46 H 1.09001 * 109.46900 * 143.43893 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0902 0.5819 -0.0005 6 6 3.9132 2.9075 0.0000 7 6 3.0694 4.0150 -0.1313 8 6 3.5913 5.2771 -0.1254 9 6 2.6783 6.4682 -0.2617 10 6 4.9650 5.4664 0.0003 11 7 5.4907 6.7533 0.0002 12 6 6.9359 6.9543 0.1318 13 6 7.2472 8.4520 0.1032 14 6 8.7565 8.6619 0.2400 15 6 9.0632 10.1370 0.2112 16 1 8.2617 10.8532 0.1063 17 6 10.3669 10.5724 0.3199 18 7 11.3429 9.7001 0.4482 19 14 10.7470 12.4010 0.2849 20 1 9.4835 13.1664 0.1338 21 1 11.4136 12.7922 1.5529 22 1 11.6462 12.6978 -0.8590 23 6 5.8135 4.3695 0.1258 24 6 5.2935 3.0951 0.1261 25 6 6.2085 1.9055 0.2622 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 2.0037 3.8724 -0.2328 32 1 2.5574 6.7145 -1.3166 33 1 1.7057 6.2319 0.1700 34 1 3.1114 7.3199 0.2628 35 1 4.9006 7.5182 -0.0871 36 1 7.2771 6.5305 1.0762 37 1 7.4480 6.4606 -0.6941 38 1 6.9058 8.8761 -0.8412 39 1 6.7351 8.9453 0.9292 40 1 9.0982 8.2376 1.1841 41 1 9.2683 8.1686 -0.5864 42 1 12.2601 10.0064 0.5242 43 1 6.8787 4.5185 0.2227 44 1 6.4350 1.5063 -0.7264 45 1 7.1332 2.2124 0.7507 46 1 5.7190 1.1372 0.8608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168436251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:42 Heat of formation + Delta-G solvation = -88.146651 kcal Electronic energy + Delta-G solvation = -24051.689585 eV Core-core repulsion = 20519.173679 eV Total energy + Delta-G solvation = -3532.515905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72787 -39.50283 -36.92462 -36.09590 -34.05561 -33.36103 -32.14289 -31.50848 -29.64807 -29.03235 -26.64049 -25.34436 -23.99303 -23.51557 -22.19851 -21.54828 -20.67507 -19.87780 -17.75213 -16.83079 -16.66883 -16.55236 -16.46848 -15.79061 -15.04821 -14.54011 -14.49425 -14.36569 -14.02124 -13.81753 -13.67615 -13.16643 -13.11446 -12.88400 -12.73271 -12.43390 -12.37962 -12.30183 -12.11520 -11.92520 -11.82082 -11.67855 -11.50576 -11.03552 -10.98227 -10.72268 -10.69494 -10.59872 -10.16479 -10.05505 -9.74797 -9.55525 -9.18704 -8.68039 -8.43591 -7.39873 -6.08217 -4.11289 0.93534 1.41894 2.60140 2.64200 3.26016 3.33780 3.36987 3.49933 3.80728 4.39497 4.59884 4.64965 4.70824 4.75472 4.82075 4.98441 5.06593 5.19179 5.27979 5.31825 5.44428 5.46984 5.49790 5.54413 5.61294 5.61808 5.65655 5.71781 5.79877 5.85443 5.96624 6.00341 6.17011 6.17261 6.28394 6.41623 6.47386 6.52528 6.66103 6.80093 6.88311 7.32525 7.55221 7.66802 7.72705 7.80345 7.90010 8.31324 8.95316 9.53458 11.03064 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.032657 B = 0.002207 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.186917 B =12681.596795 C =13487.937511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.359 6.359 4 C 0.515 3.485 5 O -0.517 6.517 6 C -0.210 4.210 7 C -0.008 4.008 8 C -0.192 4.192 9 C -0.103 4.103 10 C 0.268 3.732 11 N -0.726 5.726 12 C 0.113 3.887 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.218 4.218 24 C 0.034 3.966 25 C -0.124 4.124 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.131 0.869 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.401 0.599 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.134 0.866 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.739 -16.137 -1.036 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.277 6.277 4 C 0.364 3.636 5 O -0.408 6.408 6 C -0.213 4.213 7 C -0.027 4.027 8 C -0.197 4.197 9 C -0.160 4.160 10 C 0.158 3.842 11 N -0.350 5.350 12 C -0.010 4.010 13 C -0.159 4.159 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.241 4.241 24 C 0.032 3.968 25 C -0.180 4.180 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.238 0.762 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.152 0.848 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.123 -16.388 -0.994 25.971 hybrid contribution 0.190 1.170 -0.060 1.186 sum -19.933 -15.219 -1.055 25.101 Atomic orbital electron populations 1.21803 0.92797 1.02837 1.03502 1.22957 0.95147 0.80492 1.02467 1.86553 1.24510 1.31887 1.84738 1.21130 0.80032 0.90043 0.72437 1.90768 1.59635 1.43008 1.47382 1.18492 0.93304 0.89511 1.20015 1.20667 0.99299 0.90483 0.92257 1.19034 0.92204 0.95609 1.12838 1.20579 0.98282 0.95232 1.01943 1.18005 0.91619 0.85851 0.88707 1.45228 1.08631 1.04364 1.76809 1.21776 0.78563 0.99564 1.01090 1.21867 1.01753 0.91248 1.01022 1.19031 0.87684 0.97106 0.97514 1.21228 0.92476 0.92106 1.50320 0.92597 1.25031 0.96464 0.97772 0.95195 1.69968 0.99705 1.33561 1.50013 0.86520 0.78362 0.85366 0.77656 1.19756 1.20960 1.20954 1.20509 0.99938 0.90272 1.13383 1.19690 0.91885 0.94909 0.90281 1.21122 0.97810 0.95798 1.03256 0.91499 0.91503 0.90371 0.91381 0.91380 0.85106 0.91605 0.91437 0.92087 0.76217 0.91958 0.91934 0.92674 0.92685 0.96284 0.96279 0.92938 0.84848 0.90578 0.91987 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.49 16 2 C 0.06 0.54 6.20 37.16 0.23 0.77 16 3 O -0.36 -4.07 9.48 -40.65 -0.39 -4.45 16 4 C 0.52 6.81 7.82 34.45 0.27 7.08 16 5 O -0.52 -7.59 13.12 -19.28 -0.25 -7.84 16 6 C -0.21 -2.77 5.88 -104.96 -0.62 -3.38 16 7 C -0.01 -0.09 9.19 -39.58 -0.36 -0.46 16 8 C -0.19 -2.28 5.86 -104.85 -0.61 -2.89 16 9 C -0.10 -0.96 9.55 36.00 0.34 -0.61 16 10 C 0.27 3.59 6.63 -83.86 -0.56 3.03 16 11 N -0.73 -9.73 5.61 -58.64 -0.33 -10.06 16 12 C 0.11 1.76 4.90 -4.05 -0.02 1.74 16 13 C -0.12 -2.25 5.27 -26.74 -0.14 -2.40 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 19 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.22 -2.99 8.91 -39.43 -0.35 -3.34 16 24 C 0.03 0.46 5.91 -104.23 -0.62 -0.16 16 25 C -0.12 -1.53 8.73 36.01 0.31 -1.22 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.13 1.29 7.61 -52.49 -0.40 0.89 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.06 0.55 6.53 -51.93 -0.34 0.21 16 35 H 0.40 4.81 6.43 -40.82 -0.26 4.55 16 36 H 0.06 0.98 7.93 -51.93 -0.41 0.57 16 37 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 38 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.13 1.79 6.70 -52.49 -0.35 1.44 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 46 H 0.09 1.20 5.85 -51.93 -0.30 0.90 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -30.58 377.73 -9.36 -39.94 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.51 Total: 1.07 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.29 Total: -15.00 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.41 Total: -35.58 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.64 Total: -12.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.58 -9.36 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.208 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds