Wall clock time and date at job start Tue Mar 31 2020 10:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.46866 * 2 1 4 4 C 1.34757 * 117.00055 * 180.02562 * 3 2 1 5 5 O 1.21522 * 120.00034 * 359.97438 * 4 3 2 6 6 C 1.47379 * 120.00329 * 180.02562 * 4 3 2 7 7 C 1.39858 * 120.07380 * 353.72060 * 6 4 3 8 8 C 1.36575 * 120.05373 * 179.73696 * 7 6 4 9 9 C 1.50695 * 119.90233 * 180.23799 * 8 7 6 10 10 C 1.39243 * 120.19900 * 0.52245 * 8 7 6 11 11 N 1.39014 * 119.92686 * 179.73466 * 10 8 7 12 12 C 1.46498 * 120.00261 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47259 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47357 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47443 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99883 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00091 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99876 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00040 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47098 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46841 * 120.00309 * 19 17 15 22 22 H 1.48499 * 109.46907 * 239.99958 * 19 17 15 23 23 C 1.39241 * 120.14751 * 359.75655 * 10 8 7 24 24 C 1.37635 * 119.94751 * 359.97438 * 23 10 8 25 25 C 1.50701 * 120.10095 * 180.02562 * 24 23 10 26 26 H 1.09000 * 109.46735 * 299.99951 * 1 2 3 27 27 H 1.09000 * 109.47398 * 60.00462 * 1 2 3 28 28 H 1.08998 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47466 * 119.99877 * 2 1 3 30 30 H 1.09004 * 109.47204 * 240.00082 * 2 1 3 31 31 H 1.07998 * 119.97448 * 0.02562 * 7 6 4 32 32 H 1.09002 * 109.47295 * 270.28143 * 9 8 7 33 33 H 1.08999 * 109.47266 * 30.28099 * 9 8 7 34 34 H 1.08999 * 109.47210 * 150.28555 * 9 8 7 35 35 H 0.97003 * 119.99641 * 0.02709 * 11 10 8 36 36 H 1.09000 * 109.47243 * 300.00851 * 12 11 10 37 37 H 1.09005 * 109.46867 * 60.00535 * 12 11 10 38 38 H 1.09009 * 109.47193 * 300.00250 * 13 12 11 39 39 H 1.08991 * 109.47275 * 60.00327 * 13 12 11 40 40 H 1.09000 * 109.46822 * 300.00336 * 14 13 12 41 41 H 1.09005 * 109.47190 * 59.99961 * 14 13 12 42 42 H 0.96995 * 119.99756 * 179.97438 * 18 17 15 43 43 H 1.07994 * 120.02485 * 179.97438 * 23 10 8 44 44 H 1.08997 * 109.47281 * 263.43836 * 25 24 23 45 45 H 1.08994 * 109.47035 * 23.43956 * 25 24 23 46 46 H 1.09001 * 109.46900 * 143.43893 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0902 0.5819 -0.0005 6 6 3.9132 2.9075 0.0000 7 6 3.0694 4.0150 -0.1313 8 6 3.5913 5.2771 -0.1254 9 6 2.6783 6.4682 -0.2617 10 6 4.9650 5.4664 0.0003 11 7 5.4907 6.7533 0.0002 12 6 6.9359 6.9543 0.1318 13 6 7.2472 8.4520 0.1032 14 6 8.7565 8.6619 0.2400 15 6 9.0632 10.1370 0.2112 16 1 8.2617 10.8532 0.1063 17 6 10.3669 10.5724 0.3199 18 7 11.3429 9.7001 0.4482 19 14 10.7470 12.4010 0.2849 20 1 9.4835 13.1664 0.1338 21 1 11.4136 12.7922 1.5529 22 1 11.6462 12.6978 -0.8590 23 6 5.8135 4.3695 0.1258 24 6 5.2935 3.0951 0.1261 25 6 6.2085 1.9055 0.2622 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 2.0037 3.8724 -0.2328 32 1 2.5574 6.7145 -1.3166 33 1 1.7057 6.2319 0.1700 34 1 3.1114 7.3199 0.2628 35 1 4.9006 7.5182 -0.0871 36 1 7.2771 6.5305 1.0762 37 1 7.4480 6.4606 -0.6941 38 1 6.9058 8.8761 -0.8412 39 1 6.7351 8.9453 0.9292 40 1 9.0982 8.2376 1.1841 41 1 9.2683 8.1686 -0.5864 42 1 12.2601 10.0064 0.5242 43 1 6.8787 4.5185 0.2227 44 1 6.4350 1.5063 -0.7264 45 1 7.1332 2.2124 0.7507 46 1 5.7190 1.1372 0.8608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168436251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:41 Heat of formation + Delta-G solvation = -103.130557 kcal Electronic energy + Delta-G solvation = -24052.339336 eV Core-core repulsion = 20519.173679 eV Total energy + Delta-G solvation = -3533.165656 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70528 -40.48748 -37.93072 -37.28652 -35.60322 -34.61294 -33.37533 -32.58057 -30.74028 -30.05568 -28.27059 -26.22245 -25.41968 -24.47257 -23.17818 -22.85311 -21.93216 -21.03273 -18.74875 -18.49129 -17.83729 -17.53069 -17.49436 -16.96889 -16.45789 -16.38726 -15.42758 -15.36295 -15.10175 -14.75021 -14.57174 -14.35127 -14.05543 -13.82735 -13.79916 -13.73939 -13.67507 -13.49350 -13.21010 -12.89130 -12.82595 -12.64577 -12.56641 -12.53311 -12.44504 -12.31787 -11.88408 -11.74984 -11.48175 -11.46614 -11.18773 -11.06577 -10.98860 -10.56730 -9.65398 -8.44628 -8.21218 -6.31890 -0.08606 0.44235 1.40215 1.40975 1.53513 1.61258 1.75630 2.34531 2.44335 2.81270 3.12881 3.71838 3.79294 3.90688 4.04928 4.10119 4.13081 4.16289 4.21521 4.29471 4.38789 4.52270 4.55714 4.64668 4.75766 4.79472 4.86511 4.88198 4.89642 4.94634 4.96067 5.02052 5.11140 5.14569 5.17821 5.18755 5.30773 5.42008 5.49354 5.50307 5.66155 5.70703 5.78291 5.83432 6.17988 6.26689 6.72266 6.82584 6.85640 7.37661 8.90695 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.032657 B = 0.002207 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.186917 B =12681.596795 C =13487.937511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 O -0.359 6.359 4 C 0.515 3.485 5 O -0.538 6.538 6 C -0.220 4.220 7 C -0.005 4.005 8 C -0.188 4.188 9 C -0.103 4.103 10 C 0.256 3.744 11 N -0.721 5.721 12 C 0.129 3.871 13 C -0.104 4.104 14 C 0.025 3.975 15 C -0.542 4.542 16 H 0.062 0.938 17 C -0.002 4.002 18 N -0.932 5.932 19 Si 0.964 3.036 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.230 4.230 24 C 0.020 3.980 25 C -0.119 4.119 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.153 0.847 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.410 0.590 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.061 0.939 40 H -0.004 1.004 41 H -0.005 1.005 42 H 0.263 0.737 43 H 0.129 0.871 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.101 -15.306 -1.250 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.276 6.276 4 C 0.364 3.636 5 O -0.431 6.431 6 C -0.224 4.224 7 C -0.024 4.024 8 C -0.192 4.192 9 C -0.160 4.160 10 C 0.147 3.853 11 N -0.348 5.348 12 C 0.005 3.995 13 C -0.142 4.142 14 C -0.013 4.013 15 C -0.580 4.580 16 H 0.081 0.919 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.789 3.211 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.253 4.253 24 C 0.019 3.981 25 C -0.175 4.175 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.248 0.752 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.072 0.928 43 H 0.147 0.853 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.531 -15.561 -1.211 27.409 hybrid contribution 0.867 0.812 0.006 1.188 sum -21.664 -14.750 -1.205 26.236 Atomic orbital electron populations 1.21819 0.90346 1.04338 1.03730 1.23263 0.97031 0.79179 1.02417 1.86543 1.23259 1.33588 1.84232 1.21186 0.80609 0.89829 0.72016 1.90755 1.60276 1.43626 1.48426 1.18696 0.93459 0.90188 1.20021 1.20897 1.00197 0.89913 0.91402 1.19328 0.91832 0.96688 1.11358 1.20657 0.98492 0.94038 1.02829 1.18141 0.92414 0.85424 0.89322 1.44939 1.07494 1.04874 1.77477 1.21392 0.80145 0.97220 1.00789 1.21574 0.97558 0.93505 1.01591 1.18931 0.91513 0.95549 0.95268 1.21712 0.92877 0.93625 1.49763 0.91934 1.25975 0.96451 1.02686 0.94838 1.70098 1.00151 1.35869 1.51143 0.85412 0.78491 0.79546 0.77676 1.18455 1.20558 1.20552 1.20565 0.99970 0.90737 1.13997 1.19826 0.92455 0.95038 0.90768 1.21061 0.97974 0.95345 1.03087 0.91277 0.91206 0.88237 0.91503 0.91474 0.82949 0.90614 0.89627 0.91757 0.75190 0.92399 0.92404 0.91995 0.91986 0.98606 0.98616 0.92805 0.85313 0.90700 0.91185 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 71.98 0.74 -0.63 16 2 C 0.05 0.87 6.20 71.98 0.45 1.32 16 3 O -0.36 -7.71 9.48 -56.68 -0.54 -8.24 16 4 C 0.51 13.38 7.82 70.23 0.55 13.93 16 5 O -0.54 -15.90 13.12 19.77 0.26 -15.64 16 6 C -0.22 -5.66 5.88 -20.09 -0.12 -5.78 16 7 C -0.01 -0.11 9.19 22.27 0.20 0.09 16 8 C -0.19 -4.07 5.86 -20.01 -0.12 -4.19 16 9 C -0.10 -1.60 9.55 71.23 0.68 -0.92 16 10 C 0.26 6.58 6.63 38.49 0.26 6.83 16 11 N -0.72 -18.43 5.61 -339.42 -1.90 -20.34 16 12 C 0.13 3.98 4.90 86.38 0.42 4.40 16 13 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 14 C 0.03 1.25 4.97 29.85 0.15 1.40 16 15 C -0.54 -29.73 9.11 25.60 0.23 -29.50 16 16 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 17 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 18 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 19 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 C -0.23 -6.29 8.91 22.37 0.20 -6.09 16 24 C 0.02 0.55 5.91 -19.61 -0.12 0.44 16 25 C -0.12 -3.00 8.73 71.24 0.62 -2.38 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.15 2.59 7.61 -2.91 -0.02 2.56 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 34 H 0.06 0.97 6.53 -2.39 -0.02 0.95 16 35 H 0.41 9.01 6.43 -92.71 -0.60 8.41 16 36 H 0.06 1.84 7.93 -2.39 -0.02 1.82 16 37 H 0.06 1.84 7.93 -2.38 -0.02 1.83 16 38 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 42 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.13 3.55 6.70 -2.91 -0.02 3.53 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 1.60 8.04 -2.39 -0.02 1.58 16 46 H 0.08 2.23 5.85 -2.39 -0.01 2.22 16 Total: -1.00 -65.85 377.73 5.28 -60.58 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.37 Total: 18.16 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 4.77 Total: -24.39 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.62 Total: -75.81 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.28 Total: -23.88 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.85 5.28 -60.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.553 kcal (2) G-P(sol) polarization free energy of solvation -65.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds