Wall clock time and date at job start Tue Mar 31 2020 10:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00212 * 2 1 4 4 C 1.38726 * 120.06173 * 179.97438 * 3 2 1 5 5 C 1.38137 * 119.94751 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05906 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.94722 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.48247 * 25.02044 * 7 6 5 9 9 C 1.53090 * 109.47879 * 264.99609 * 7 6 5 10 10 C 1.53179 * 109.16577 * 182.40870 * 9 7 6 11 11 H 1.09002 * 109.54198 * 297.11482 * 10 9 7 12 12 N 1.46902 * 109.54607 * 176.93741 * 10 9 7 13 13 C 1.46899 * 110.99819 * 155.17925 * 12 10 9 14 14 C 1.53005 * 109.46675 * 180.02562 * 13 12 10 15 15 C 1.50710 * 109.46938 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99600 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99824 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99921 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00307 * 359.97438 * 17 15 14 20 20 H 1.48511 * 109.47094 * 89.99929 * 19 17 15 21 21 H 1.48497 * 109.47480 * 209.99709 * 19 17 15 22 22 H 1.48498 * 109.47327 * 330.00375 * 19 17 15 23 23 C 1.53178 * 109.03443 * 56.97942 * 10 9 7 24 24 C 1.53090 * 109.16307 * 303.02234 * 23 10 9 25 25 O 1.42899 * 109.41602 * 57.60933 * 24 23 10 26 26 C 1.38264 * 120.10749 * 0.26867 * 6 5 4 27 27 C 1.38152 * 120.05577 * 359.45652 * 26 6 5 28 28 H 1.08997 * 109.47048 * 299.99825 * 1 2 3 29 29 H 1.09003 * 109.47011 * 60.00381 * 1 2 3 30 30 H 1.08999 * 109.46749 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.02808 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.97276 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.52297 * 62.50588 * 9 7 6 34 34 H 1.09004 * 109.57689 * 302.34353 * 9 7 6 35 35 H 1.00897 * 110.99928 * 31.22358 * 12 10 9 36 36 H 1.09000 * 109.47018 * 299.99375 * 13 12 10 37 37 H 1.08994 * 109.47486 * 60.00421 * 13 12 10 38 38 H 1.09000 * 109.46694 * 299.99336 * 14 13 12 39 39 H 1.08995 * 109.47892 * 59.99659 * 14 13 12 40 40 H 0.97001 * 120.00258 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.52205 * 62.93144 * 23 10 9 42 42 H 1.09000 * 109.52518 * 183.11138 * 23 10 9 43 43 H 1.08998 * 109.48184 * 297.61931 * 24 23 10 44 44 H 1.09007 * 109.47987 * 177.59100 * 24 23 10 45 45 H 1.07999 * 119.97804 * 179.70586 * 26 6 5 46 46 H 1.08005 * 120.03127 * 180.27294 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3019 3.6759 -0.0005 7 6 3.9860 5.0185 -0.0017 8 1 4.9805 4.9194 -0.4366 9 6 4.1061 5.5315 1.4357 10 6 4.7476 6.9225 1.4213 11 1 5.7579 6.8539 1.0178 12 7 4.8000 7.4537 2.7899 13 6 5.8751 8.4451 2.9289 14 6 5.8986 8.9739 4.3645 15 6 7.0019 9.9905 4.5073 16 1 7.6238 10.2353 3.6589 17 6 7.2166 10.6089 5.7207 18 7 8.1798 11.4957 5.8455 19 14 6.1396 10.1871 7.1875 20 1 6.7449 9.0571 7.9374 21 1 6.0306 11.3703 8.0782 22 1 4.7872 9.7983 6.7131 23 6 3.9062 7.8516 0.5408 24 6 3.7938 7.2489 -0.8620 25 8 3.2182 5.9440 -0.7737 26 6 1.9211 3.6048 0.0051 27 6 1.2915 2.3751 -0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0209 0.3800 0.0014 32 1 5.1345 2.5751 0.0000 33 1 4.7284 4.8495 2.0151 34 1 3.1152 5.5921 1.8858 35 1 4.9052 6.7094 3.4629 36 1 6.8324 7.9776 2.6986 37 1 5.6989 9.2711 2.2399 38 1 4.9413 9.4413 4.5951 39 1 6.0749 8.1478 5.0532 40 1 8.3306 11.9310 6.6991 41 1 2.9109 7.9592 0.9719 42 1 4.3854 8.8287 0.4802 43 1 4.7858 7.1793 -1.3082 44 1 3.1605 7.8845 -1.4810 45 1 1.3341 4.5114 0.0094 46 1 0.2128 2.3201 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168603978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:09 Heat of formation + Delta-G solvation = -68.272960 kcal Electronic energy + Delta-G solvation = -24391.604230 eV Core-core repulsion = 20859.950113 eV Total energy + Delta-G solvation = -3531.654117 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57947 -39.60086 -37.61163 -36.19195 -33.34592 -32.49982 -31.68723 -31.30844 -29.51457 -28.76937 -27.49001 -24.79500 -23.78012 -23.31756 -22.67743 -21.12365 -20.43595 -19.93061 -18.46480 -16.85028 -16.75593 -16.55720 -16.06734 -15.85467 -15.28834 -15.20637 -14.85155 -14.62764 -14.30447 -13.98859 -13.91736 -13.55725 -13.38717 -13.09611 -12.97191 -12.66921 -12.45743 -12.31385 -12.03051 -11.70890 -11.48963 -11.37297 -11.21641 -11.07196 -11.00603 -10.58736 -10.51109 -10.05060 -9.91700 -9.83940 -9.53563 -9.24242 -9.22975 -8.54422 -8.35456 -7.98579 -6.05160 -4.03665 1.07754 1.15881 2.94568 3.31622 3.39237 3.40784 3.45315 3.68607 4.39393 4.45744 4.52054 4.56716 4.61021 4.76946 4.78031 4.85981 4.94874 5.01794 5.07694 5.11137 5.18963 5.23068 5.29341 5.30834 5.37780 5.46713 5.59495 5.63020 5.79615 5.85942 5.94938 6.01565 6.11249 6.13665 6.17084 6.22133 6.36070 6.42780 6.47500 6.76059 7.07316 7.11850 7.14309 7.36206 7.59634 7.73773 7.88885 8.52071 8.98583 9.57192 11.08091 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021577 B = 0.002440 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.393637 B =11471.636952 C =12158.316256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.125 3.875 4 C -0.153 4.153 5 C -0.071 4.071 6 C -0.114 4.114 7 C 0.141 3.859 8 H 0.065 0.935 9 C -0.145 4.145 10 C 0.086 3.914 11 H 0.041 0.959 12 N -0.689 5.689 13 C 0.074 3.926 14 C -0.010 4.010 15 C -0.521 4.521 16 H 0.070 0.930 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.882 3.118 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.263 1.263 23 C -0.144 4.144 24 C 0.063 3.937 25 O -0.377 6.377 26 C -0.050 4.050 27 C -0.210 4.210 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.336 0.664 36 H 0.021 0.979 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.008 0.992 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.095 0.905 45 H 0.132 0.868 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.609 -21.326 -15.123 29.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.171 4.171 5 C -0.089 4.089 6 C -0.115 4.115 7 C 0.082 3.918 8 H 0.083 0.917 9 C -0.183 4.183 10 C -0.024 4.024 11 H 0.059 0.941 12 N -0.320 5.320 13 C -0.054 4.054 14 C -0.048 4.048 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.709 3.291 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.188 1.188 23 C -0.183 4.183 24 C -0.014 4.014 25 O -0.296 6.296 26 C -0.068 4.068 27 C -0.229 4.229 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.114 0.886 45 H 0.150 0.850 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.099 -20.964 -15.186 29.968 hybrid contribution 0.381 -0.381 1.038 1.169 sum -14.718 -21.345 -14.148 29.536 Atomic orbital electron populations 1.23056 0.78364 1.03894 1.01474 1.86058 1.21432 1.27077 1.88754 1.19072 0.92413 0.84123 0.96434 1.20340 0.91353 0.98454 1.06978 1.20759 0.99864 0.90762 0.97490 1.19508 0.93968 0.93455 1.04553 1.20708 0.93605 0.86295 0.91155 0.91717 1.22402 1.02971 0.96371 0.96534 1.21505 0.97149 0.92671 0.91106 0.94092 1.60619 1.50207 1.18063 1.03097 1.22001 0.89557 0.93544 1.00308 1.19549 0.97790 0.96067 0.91364 1.21065 1.15306 1.21784 0.97826 0.91150 1.25015 0.95042 0.94615 0.98817 1.69917 1.31394 1.27557 1.25391 0.86741 0.81930 0.77879 0.82543 1.20405 1.21424 1.18760 1.22221 1.01909 0.99518 0.94613 1.22623 0.98502 0.83475 0.96784 1.87893 1.49182 1.20856 1.71699 1.20818 0.94024 0.97158 0.94849 1.21262 1.00061 0.92289 1.09286 0.92563 0.92608 0.88279 0.85106 0.85197 0.90985 0.90037 0.84576 0.96061 0.91739 0.95664 0.97329 0.92726 0.90350 0.90640 0.93319 0.88644 0.85048 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.02 10.50 -19.43 -0.20 -3.23 16 3 C 0.12 1.26 6.69 -39.22 -0.26 1.00 16 4 C -0.15 -1.48 9.99 -39.44 -0.39 -1.88 16 5 C -0.07 -0.68 9.67 -39.61 -0.38 -1.06 16 6 C -0.11 -1.22 5.01 -104.60 -0.52 -1.74 16 7 C 0.14 1.54 2.85 -27.84 -0.08 1.46 16 8 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 9 C -0.14 -1.69 4.67 -26.59 -0.12 -1.82 16 10 C 0.09 1.17 2.57 -67.53 -0.17 1.00 16 11 H 0.04 0.57 7.80 -51.93 -0.41 0.17 16 12 N -0.69 -11.44 6.32 -106.53 -0.67 -12.11 16 13 C 0.07 1.48 5.43 -3.82 -0.02 1.46 16 14 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 15 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 19 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 23 C -0.14 -1.84 5.63 -26.59 -0.15 -1.99 16 24 C 0.06 0.68 6.84 37.20 0.25 0.93 16 25 O -0.38 -4.48 9.55 -35.23 -0.34 -4.81 16 26 C -0.05 -0.53 9.34 -39.60 -0.37 -0.90 16 27 C -0.21 -2.01 9.04 -39.43 -0.36 -2.37 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.34 5.30 8.37 -39.29 -0.33 4.98 16 36 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 37 H 0.06 1.32 7.53 -51.93 -0.39 0.92 16 38 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 39 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.01 7.57 -51.93 -0.39 0.62 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 45 H 0.13 1.35 7.63 -52.49 -0.40 0.95 16 46 H 0.13 0.95 6.30 -52.48 -0.33 0.62 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -32.24 368.19 -9.32 -41.56 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.62 Total: 1.55 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -2.14 Total: -18.57 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.10 Total: -39.36 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.54 Total: -8.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.24 -9.32 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168603978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.717 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds