Wall clock time and date at job start Tue Mar 31 2020 10:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00212 * 2 1 4 4 C 1.38726 * 120.06173 * 179.97438 * 3 2 1 5 5 C 1.38137 * 119.94751 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05906 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.94722 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.48247 * 25.02044 * 7 6 5 9 9 C 1.53090 * 109.47879 * 264.99609 * 7 6 5 10 10 C 1.53179 * 109.16577 * 182.40870 * 9 7 6 11 11 H 1.09002 * 109.54198 * 297.11482 * 10 9 7 12 12 N 1.46902 * 109.54607 * 176.93741 * 10 9 7 13 13 C 1.46899 * 110.99819 * 155.17925 * 12 10 9 14 14 C 1.53005 * 109.46675 * 180.02562 * 13 12 10 15 15 C 1.50710 * 109.46938 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99600 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99824 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99921 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00307 * 359.97438 * 17 15 14 20 20 H 1.48511 * 109.47094 * 89.99929 * 19 17 15 21 21 H 1.48497 * 109.47480 * 209.99709 * 19 17 15 22 22 H 1.48498 * 109.47327 * 330.00375 * 19 17 15 23 23 C 1.53178 * 109.03443 * 56.97942 * 10 9 7 24 24 C 1.53090 * 109.16307 * 303.02234 * 23 10 9 25 25 O 1.42899 * 109.41602 * 57.60933 * 24 23 10 26 26 C 1.38264 * 120.10749 * 0.26867 * 6 5 4 27 27 C 1.38152 * 120.05577 * 359.45652 * 26 6 5 28 28 H 1.08997 * 109.47048 * 299.99825 * 1 2 3 29 29 H 1.09003 * 109.47011 * 60.00381 * 1 2 3 30 30 H 1.08999 * 109.46749 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.02808 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.97276 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.52297 * 62.50588 * 9 7 6 34 34 H 1.09004 * 109.57689 * 302.34353 * 9 7 6 35 35 H 1.00897 * 110.99928 * 31.22358 * 12 10 9 36 36 H 1.09000 * 109.47018 * 299.99375 * 13 12 10 37 37 H 1.08994 * 109.47486 * 60.00421 * 13 12 10 38 38 H 1.09000 * 109.46694 * 299.99336 * 14 13 12 39 39 H 1.08995 * 109.47892 * 59.99659 * 14 13 12 40 40 H 0.97001 * 120.00258 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.52205 * 62.93144 * 23 10 9 42 42 H 1.09000 * 109.52518 * 183.11138 * 23 10 9 43 43 H 1.08998 * 109.48184 * 297.61931 * 24 23 10 44 44 H 1.09007 * 109.47987 * 177.59100 * 24 23 10 45 45 H 1.07999 * 119.97804 * 179.70586 * 26 6 5 46 46 H 1.08005 * 120.03127 * 180.27294 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3019 3.6759 -0.0005 7 6 3.9860 5.0185 -0.0017 8 1 4.9805 4.9194 -0.4366 9 6 4.1061 5.5315 1.4357 10 6 4.7476 6.9225 1.4213 11 1 5.7579 6.8539 1.0178 12 7 4.8000 7.4537 2.7899 13 6 5.8751 8.4451 2.9289 14 6 5.8986 8.9739 4.3645 15 6 7.0019 9.9905 4.5073 16 1 7.6238 10.2353 3.6589 17 6 7.2166 10.6089 5.7207 18 7 8.1798 11.4957 5.8455 19 14 6.1396 10.1871 7.1875 20 1 6.7449 9.0571 7.9374 21 1 6.0306 11.3703 8.0782 22 1 4.7872 9.7983 6.7131 23 6 3.9062 7.8516 0.5408 24 6 3.7938 7.2489 -0.8620 25 8 3.2182 5.9440 -0.7737 26 6 1.9211 3.6048 0.0051 27 6 1.2915 2.3751 -0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0209 0.3800 0.0014 32 1 5.1345 2.5751 0.0000 33 1 4.7284 4.8495 2.0151 34 1 3.1152 5.5921 1.8858 35 1 4.9052 6.7094 3.4629 36 1 6.8324 7.9776 2.6986 37 1 5.6989 9.2711 2.2399 38 1 4.9413 9.4413 4.5951 39 1 6.0749 8.1478 5.0532 40 1 8.3306 11.9310 6.6991 41 1 2.9109 7.9592 0.9719 42 1 4.3854 8.8287 0.4802 43 1 4.7858 7.1793 -1.3082 44 1 3.1605 7.8845 -1.4810 45 1 1.3341 4.5114 0.0094 46 1 0.2128 2.3201 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168603978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:08 Heat of formation + Delta-G solvation = -89.008041 kcal Electronic energy + Delta-G solvation = -24392.503370 eV Core-core repulsion = 20859.950113 eV Total energy + Delta-G solvation = -3532.553258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32687 -40.44765 -38.38396 -37.46375 -35.23604 -33.49834 -33.17822 -32.02925 -30.79291 -29.89778 -28.09052 -26.31185 -24.71245 -24.51204 -23.46799 -22.30037 -21.84271 -21.01994 -19.12662 -18.96009 -17.57432 -17.47052 -16.76837 -16.62829 -16.54535 -16.27233 -16.01502 -15.93880 -15.49768 -15.04866 -14.91544 -14.63544 -14.53941 -14.25611 -14.24161 -13.92903 -13.49452 -13.33331 -13.03303 -12.89579 -12.79519 -12.54740 -12.31447 -12.02468 -11.91501 -11.81456 -11.77987 -11.73115 -11.56914 -11.40927 -11.20277 -10.77894 -10.56309 -9.95677 -9.36712 -9.08079 -8.30930 -6.35573 0.35842 0.41552 1.35784 1.38492 1.51503 2.35903 2.37915 2.63462 2.88085 3.04521 3.18738 3.64564 3.85681 3.89700 3.96003 4.04101 4.11462 4.23284 4.28275 4.32299 4.39265 4.42525 4.45565 4.47624 4.53517 4.58438 4.60914 4.73272 4.73900 4.75296 4.86582 4.95209 5.05677 5.08331 5.14492 5.25986 5.28498 5.34978 5.40115 5.47793 5.62241 5.62710 5.78348 6.14004 6.24304 6.27268 6.43781 6.51466 6.72955 7.29360 8.85585 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021577 B = 0.002440 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.393637 B =11471.636952 C =12158.316256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.115 3.885 4 C -0.163 4.163 5 C -0.072 4.072 6 C -0.128 4.128 7 C 0.144 3.856 8 H 0.074 0.926 9 C -0.135 4.135 10 C 0.084 3.916 11 H 0.041 0.959 12 N -0.689 5.689 13 C 0.089 3.911 14 C -0.004 4.004 15 C -0.533 4.533 16 H 0.032 0.968 17 C 0.004 3.996 18 N -0.950 5.950 19 Si 0.954 3.046 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.249 1.249 23 C -0.142 4.142 24 C 0.067 3.933 25 O -0.386 6.386 26 C -0.062 4.062 27 C -0.213 4.213 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.343 0.657 36 H 0.017 0.983 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.018 0.982 40 H 0.267 0.733 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.112 0.888 45 H 0.129 0.871 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.193 -23.241 -15.071 32.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.070 3.930 4 C -0.181 4.181 5 C -0.089 4.089 6 C -0.128 4.128 7 C 0.086 3.914 8 H 0.092 0.908 9 C -0.173 4.173 10 C -0.025 4.025 11 H 0.059 0.941 12 N -0.321 5.321 13 C -0.040 4.040 14 C -0.042 4.042 15 C -0.572 4.572 16 H 0.050 0.950 17 C -0.193 4.193 18 N -0.590 5.590 19 Si 0.778 3.222 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.172 1.172 23 C -0.180 4.180 24 C -0.010 4.010 25 O -0.306 6.306 26 C -0.080 4.080 27 C -0.232 4.232 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.162 0.838 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.130 0.870 45 H 0.147 0.853 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.698 -22.900 -15.154 32.138 hybrid contribution 0.881 0.193 0.940 1.302 sum -15.817 -22.707 -14.215 31.110 Atomic orbital electron populations 1.23328 0.76577 1.05539 1.02163 1.86041 1.23373 1.26860 1.88647 1.19279 0.92838 0.84566 0.96330 1.20595 0.91628 0.99049 1.06837 1.20968 1.00807 0.90346 0.96828 1.19569 0.94182 0.93534 1.05512 1.20715 0.94054 0.86312 0.90362 0.90802 1.22306 1.02362 0.95158 0.97437 1.21595 0.97574 0.93972 0.89389 0.94102 1.60537 1.48325 1.18144 1.05072 1.21651 0.90551 0.94232 0.97571 1.19438 0.95559 0.95075 0.94145 1.21402 1.16065 1.22934 0.96798 0.94968 1.26014 0.96544 0.94398 1.02332 1.70066 1.33443 1.29022 1.26515 0.85594 0.80349 0.78017 0.78276 1.19066 1.20971 1.17214 1.22191 1.00962 0.99052 0.95817 1.22663 0.99493 0.83261 0.95586 1.87895 1.49712 1.21189 1.71767 1.20904 0.94209 0.97476 0.95376 1.21440 1.01051 0.91835 1.08841 0.91943 0.91801 0.86285 0.83955 0.83415 0.90107 0.90832 0.83845 0.96515 0.92605 0.96011 0.96367 0.92436 0.91278 0.91653 0.92372 0.87005 0.85285 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -5.86 10.50 -92.43 -0.97 -6.83 16 3 C 0.12 2.18 6.69 22.51 0.15 2.33 16 4 C -0.16 -2.92 9.99 22.36 0.22 -2.70 16 5 C -0.07 -1.25 9.67 22.25 0.22 -1.03 16 6 C -0.13 -2.53 5.01 -19.85 -0.10 -2.63 16 7 C 0.14 2.90 2.85 29.88 0.09 2.99 16 8 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 9 C -0.13 -2.93 4.67 30.68 0.14 -2.79 16 10 C 0.08 2.19 2.57 45.03 0.12 2.31 16 11 H 0.04 1.09 7.80 -2.39 -0.02 1.07 16 12 N -0.69 -22.05 6.32 -490.95 -3.10 -25.15 16 13 C 0.09 3.53 5.43 86.31 0.47 4.00 16 14 C 0.00 -0.21 4.30 29.85 0.13 -0.08 16 15 C -0.53 -31.17 9.66 25.60 0.25 -30.92 16 16 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 17 C 0.00 0.24 5.47 84.65 0.46 0.70 16 18 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 19 Si 0.95 44.91 27.47 68.60 1.88 46.79 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 23 C -0.14 -3.49 5.63 30.68 0.17 -3.31 16 24 C 0.07 1.33 6.84 72.01 0.49 1.82 16 25 O -0.39 -8.55 9.55 -148.98 -1.42 -9.97 16 26 C -0.06 -1.22 9.34 22.26 0.21 -1.01 16 27 C -0.21 -3.79 9.04 22.37 0.20 -3.59 16 28 H 0.06 0.51 7.66 -2.39 -0.02 0.50 16 29 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 30 H 0.12 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.34 10.21 8.37 -89.70 -0.75 9.46 16 36 H 0.02 0.67 8.06 -2.39 -0.02 0.65 16 37 H 0.06 2.30 7.53 -2.39 -0.02 2.28 16 38 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 39 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 40 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.73 7.57 -2.39 -0.02 1.71 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.13 2.54 7.63 -2.91 -0.02 2.52 16 46 H 0.14 1.92 6.30 -2.91 -0.02 1.90 16 Total: -1.00 -69.39 368.19 1.17 -68.22 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.15 Total: 19.32 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 4.33 Total: -32.64 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -2.80 Total: -84.89 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -2.39 Total: -16.80 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -69.39 1.17 -68.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168603978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.792 kcal (2) G-P(sol) polarization free energy of solvation -69.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds