Wall clock time and date at job start Tue Mar 31 2020 10:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00417 * 2 1 4 4 C 1.52999 * 109.47117 * 149.99741 * 3 2 1 5 5 C 1.52994 * 109.47057 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47482 * 300.00018 * 5 4 3 7 7 N 1.46493 * 109.47296 * 179.97438 * 6 5 4 8 8 C 1.39945 * 119.99862 * 155.00260 * 7 6 5 9 9 C 1.38861 * 120.01685 * 359.45367 * 8 7 6 10 10 C 1.38110 * 119.97823 * 179.74672 * 9 8 7 11 11 C 1.38698 * 120.02089 * 0.50248 * 10 9 8 12 12 O 1.35995 * 119.98524 * 179.74725 * 11 10 9 13 13 C 1.42906 * 117.00014 * 0.02748 * 12 11 10 14 14 C 1.50694 * 109.47296 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00360 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99937 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99985 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00134 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46749 * 89.99811 * 18 16 14 20 20 H 1.48498 * 109.47200 * 209.99962 * 18 16 14 21 21 H 1.48503 * 109.47059 * 330.00287 * 18 16 14 22 22 C 1.38706 * 120.03673 * 359.77380 * 11 10 9 23 23 C 1.38114 * 120.01903 * 359.97309 * 22 11 10 24 24 C 1.53000 * 109.46617 * 59.99947 * 6 5 4 25 25 C 1.53001 * 109.46914 * 270.00175 * 3 2 1 26 26 H 1.09004 * 109.47216 * 59.99273 * 1 2 3 27 27 H 1.08994 * 109.47568 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46763 * 300.00577 * 1 2 3 29 29 H 1.08998 * 109.46832 * 29.99651 * 3 2 1 30 30 H 1.09005 * 109.47033 * 59.99969 * 4 3 2 31 31 H 1.08994 * 109.47214 * 300.00462 * 4 3 2 32 32 H 1.09004 * 109.47252 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47272 * 60.00574 * 5 4 3 34 34 H 1.08999 * 109.47321 * 300.00526 * 6 5 4 35 35 H 0.97000 * 120.00740 * 334.72874 * 7 6 5 36 36 H 1.07998 * 120.01128 * 359.97438 * 9 8 7 37 37 H 1.08000 * 119.98741 * 180.23532 * 10 9 8 38 38 H 1.08999 * 109.46620 * 300.00018 * 13 12 11 39 39 H 1.08998 * 109.47209 * 59.99397 * 13 12 11 40 40 H 0.96998 * 119.99843 * 180.02562 * 17 16 14 41 41 H 1.07997 * 119.98904 * 179.97438 * 22 11 10 42 42 H 1.07997 * 120.01051 * 179.97438 * 23 22 11 43 43 H 1.09005 * 109.47224 * 60.00401 * 24 6 5 44 44 H 1.09008 * 109.47230 * 180.02562 * 24 6 5 45 45 H 1.08998 * 109.46943 * 299.99407 * 25 3 2 46 46 H 1.08991 * 109.47152 * 60.00178 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3590 1.2631 0.7213 5 6 3.9816 2.6606 0.7207 6 6 4.1893 3.1260 -0.7220 7 7 4.7849 4.4643 -0.7225 8 6 5.5375 4.8948 -1.8210 9 6 5.7294 4.0495 -2.9058 10 6 6.4678 4.4771 -3.9917 11 6 7.0265 5.7466 -3.9945 12 8 7.7578 6.1650 -5.0620 13 6 7.9092 5.2453 -6.1453 14 6 8.7427 5.8787 -7.2292 15 1 9.1189 6.8832 -7.1038 16 6 9.0251 5.1757 -8.3813 17 7 8.5666 3.9526 -8.5343 18 14 10.0577 5.9611 -9.7253 19 1 11.4923 5.6607 -9.4865 20 1 9.6507 5.4153 -11.0450 21 1 9.8512 7.4316 -9.7127 22 6 6.8401 6.5895 -2.9088 23 6 6.0975 6.1655 -1.8243 24 6 2.8406 3.1682 -1.4432 25 6 2.2177 1.7713 -1.4425 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.3451 1.9993 0.5138 30 1 4.0242 0.5691 0.2075 31 1 3.2111 0.9312 1.7489 32 1 4.9427 2.6304 1.2342 33 1 3.3166 3.3549 1.2343 34 1 4.8543 2.4317 -1.2356 35 1 4.6544 5.0537 0.0368 36 1 5.2982 3.0593 -2.9019 37 1 6.6140 3.8211 -4.8372 38 1 8.4028 4.3415 -5.7882 39 1 6.9278 4.9896 -6.5447 40 1 8.7656 3.4579 -9.3446 41 1 7.2758 7.5777 -2.9117 42 1 5.9529 6.8218 -0.9789 43 1 2.1755 3.8626 -0.9296 44 1 2.9885 3.4993 -2.4712 45 1 2.8830 1.0774 -1.9563 46 1 1.2570 1.8014 -1.9563 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168608456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:09 Heat of formation + Delta-G solvation = -95.172491 kcal Electronic energy + Delta-G solvation = -24376.795758 eV Core-core repulsion = 20843.975190 eV Total energy + Delta-G solvation = -3532.820569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.03780 -40.26335 -38.83441 -37.46033 -35.16890 -34.55494 -32.03665 -31.74491 -30.76413 -29.62085 -28.00835 -26.96155 -25.38083 -23.86117 -23.67024 -22.63593 -21.93562 -20.94162 -19.16986 -18.44886 -17.91475 -17.63406 -17.11683 -16.68863 -16.40895 -16.34408 -16.06773 -15.78497 -15.33879 -15.11935 -14.65368 -14.44905 -14.26529 -14.05159 -13.93704 -13.80667 -13.38552 -13.19636 -13.15979 -12.99163 -12.87843 -12.73750 -12.45225 -12.29236 -12.13387 -12.07548 -11.86878 -11.70261 -11.49027 -11.36273 -11.25677 -10.76229 -10.45132 -10.21070 -9.87657 -8.38655 -7.92784 -6.53053 0.45462 0.78049 1.38592 1.42152 1.54249 2.29356 2.47679 2.86254 2.92563 2.94676 2.98489 3.66320 3.74924 3.95179 4.05329 4.10015 4.17537 4.18896 4.31362 4.42430 4.44886 4.49101 4.51218 4.53304 4.57049 4.58601 4.76736 4.81072 4.81801 4.89381 4.99195 5.00180 5.08785 5.09457 5.15564 5.17874 5.25642 5.33837 5.38296 5.42022 5.48762 5.64527 5.81091 5.88654 6.30012 6.43640 6.55917 6.90985 7.03311 7.20256 8.73906 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.002445 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.792661 B =11448.866409 C =12454.976033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.089 3.911 4 C -0.111 4.111 5 C -0.110 4.110 6 C 0.151 3.849 7 N -0.735 5.735 8 C 0.180 3.820 9 C -0.160 4.160 10 C -0.180 4.180 11 C 0.047 3.953 12 O -0.344 6.344 13 C 0.216 3.784 14 C -0.556 4.556 15 H 0.067 0.933 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.990 3.010 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.263 1.263 22 C -0.120 4.120 23 C -0.146 4.146 24 C -0.126 4.126 25 C -0.137 4.137 26 H 0.044 0.956 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.409 0.591 36 H 0.129 0.871 37 H 0.102 0.898 38 H -0.005 1.005 39 H -0.005 1.005 40 H 0.273 0.727 41 H 0.136 0.864 42 H 0.161 0.839 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.070 -4.093 22.720 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.032 3.968 4 C -0.149 4.149 5 C -0.148 4.148 6 C 0.045 3.955 7 N -0.367 5.367 8 C 0.078 3.922 9 C -0.183 4.183 10 C -0.200 4.200 11 C 0.001 3.999 12 O -0.259 6.259 13 C 0.142 3.858 14 C -0.594 4.594 15 H 0.085 0.915 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.812 3.188 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.187 1.187 22 C -0.139 4.139 23 C -0.168 4.168 24 C -0.165 4.165 25 C -0.175 4.175 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.246 0.754 36 H 0.147 0.853 37 H 0.120 0.880 38 H 0.013 0.987 39 H 0.013 0.987 40 H 0.082 0.918 41 H 0.154 0.846 42 H 0.178 0.822 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.929 -4.414 22.540 27.951 hybrid contribution 0.185 0.050 -1.153 1.169 sum -15.743 -4.364 21.387 26.913 Atomic orbital electron populations 1.22943 0.79943 1.03596 1.00672 1.87885 1.21082 1.28774 1.95165 1.22240 0.95377 0.84204 0.95013 1.21508 0.94870 0.97069 1.01425 1.21652 1.02307 0.96299 0.94577 1.20935 0.93243 0.83995 0.97290 1.44464 1.57061 1.16689 1.18511 1.17636 0.93302 0.92771 0.88503 1.20492 1.03819 1.00431 0.93529 1.21129 1.02443 0.96049 1.00329 1.19485 0.96130 0.94482 0.89801 1.86007 1.68019 1.44885 1.26971 1.20043 0.95020 0.88078 0.82654 1.21348 1.33908 1.02231 1.01885 0.91525 1.26023 0.97074 0.95317 1.00668 1.70074 1.45801 1.11803 1.28937 0.85085 0.78299 0.78745 0.76687 1.19073 1.19684 1.18688 1.20425 1.01894 0.99768 0.91835 1.20617 1.01302 0.95530 0.99322 1.21921 0.97092 0.96656 1.00881 1.21958 1.01269 0.96580 0.97712 0.93782 0.88867 0.92813 0.90704 0.91941 0.89826 0.90046 0.89531 0.91851 0.75418 0.85320 0.87975 0.98735 0.98744 0.91766 0.84648 0.82181 0.90485 0.93083 0.92330 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.41 -7.18 10.35 -148.98 -1.54 -8.72 16 3 C 0.09 1.27 2.61 30.59 0.08 1.35 16 4 C -0.11 -1.44 5.57 30.59 0.17 -1.27 16 5 C -0.11 -1.26 5.39 30.59 0.16 -1.09 16 6 C 0.15 2.53 2.15 44.99 0.10 2.63 16 7 N -0.73 -13.47 5.26 -318.81 -1.68 -15.15 16 8 C 0.18 4.85 6.64 38.14 0.25 5.10 16 9 C -0.16 -5.31 8.88 22.39 0.20 -5.11 16 10 C -0.18 -7.61 9.03 22.35 0.20 -7.40 16 11 C 0.05 2.12 6.69 22.49 0.15 2.27 16 12 O -0.34 -18.51 10.12 -93.49 -0.95 -19.46 16 13 C 0.22 12.75 4.49 71.23 0.32 13.07 16 14 C -0.56 -34.02 9.43 25.60 0.24 -33.77 16 15 H 0.07 4.00 7.81 -2.91 -0.02 3.97 16 16 C 0.01 0.48 5.46 84.65 0.46 0.94 16 17 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 18 Si 0.99 44.74 29.54 68.60 2.03 46.76 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 C -0.12 -4.22 9.98 22.35 0.22 -4.00 16 23 C -0.15 -3.92 9.89 22.39 0.22 -3.70 16 24 C -0.13 -2.15 5.46 30.58 0.17 -1.99 16 25 C -0.14 -2.26 5.54 30.58 0.17 -2.09 16 26 H 0.04 0.48 7.87 -2.38 -0.02 0.46 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.47 8.08 -2.39 -0.02 0.45 16 29 H 0.07 0.85 7.79 -2.39 -0.02 0.83 16 30 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 1.31 6.46 -2.39 -0.02 1.29 16 35 H 0.41 5.33 8.62 -92.71 -0.80 4.53 16 36 H 0.13 3.84 6.17 -2.91 -0.02 3.82 16 37 H 0.10 4.79 6.29 -2.91 -0.02 4.77 16 38 H -0.01 -0.32 7.66 -2.39 -0.02 -0.33 16 39 H -0.01 -0.32 7.66 -2.39 -0.02 -0.34 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 42 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 43 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.05 1.12 7.80 -2.38 -0.02 1.10 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.07 7.87 -2.39 -0.02 1.05 16 Total: -1.00 -71.48 369.41 2.66 -68.82 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.16 Total: 17.42 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 4.35 Total: -33.54 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.39 Total: -71.29 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -2.49 Total: -28.18 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.48 2.66 -68.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168608456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.353 kcal (2) G-P(sol) polarization free energy of solvation -71.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds