Wall clock time and date at job start Tue Mar 31 2020 10:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35665 * 117.00060 * 2 1 4 4 C 1.38037 * 120.21225 * 359.97438 * 3 2 1 5 5 C 1.39221 * 119.97587 * 179.78213 * 4 3 2 6 6 N 1.38925 * 119.79458 * 180.25032 * 5 4 3 7 7 C 1.46497 * 119.99947 * 180.24014 * 6 5 4 8 8 C 1.53005 * 109.46935 * 275.00000 * 7 6 5 9 9 C 1.53003 * 109.47093 * 299.99782 * 8 7 6 10 10 C 1.52995 * 109.47171 * 300.00333 * 9 8 7 11 11 O 1.42902 * 109.46914 * 179.97438 * 10 9 8 12 12 C 1.42900 * 114.00081 * 89.99748 * 11 10 9 13 13 C 1.52996 * 109.47285 * 60.00008 * 10 9 8 14 14 C 1.52996 * 109.46921 * 299.99611 * 13 10 9 15 15 C 1.39720 * 120.40695 * 0.49574 * 5 4 3 16 16 C 1.36221 * 120.42681 * 359.47667 * 15 5 4 17 17 C 1.40848 * 120.01383 * 0.28312 * 16 15 5 18 18 C 1.40971 * 120.20318 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99641 * 204.85170 * 18 17 16 20 20 C 1.39841 * 119.99926 * 24.84662 * 18 17 16 21 21 N 1.30960 * 119.99731 * 17.84599 * 20 18 17 22 22 Si 1.86800 * 120.00300 * 197.84184 * 20 18 17 23 23 H 1.48501 * 109.46578 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47143 * 120.00099 * 22 20 18 25 25 H 1.48497 * 109.47559 * 240.00546 * 22 20 18 26 26 H 1.09001 * 109.46942 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46564 * 299.99824 * 1 2 3 28 28 H 1.08995 * 109.46630 * 59.99297 * 1 2 3 29 29 H 1.07998 * 120.01031 * 0.02562 * 4 3 2 30 30 H 0.97003 * 120.00291 * 0.23890 * 6 5 4 31 31 H 1.08994 * 109.47466 * 35.00100 * 7 6 5 32 32 H 1.08995 * 109.47505 * 60.00061 * 8 7 6 33 33 H 1.08998 * 109.47132 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.46824 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.46636 * 60.00303 * 9 8 7 36 36 H 1.08998 * 109.47316 * 299.99554 * 10 9 8 37 37 H 1.09008 * 109.47141 * 59.99759 * 12 11 10 38 38 H 1.08997 * 109.47489 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47271 * 300.00119 * 12 11 10 40 40 H 1.09006 * 109.46946 * 179.97438 * 13 10 9 41 41 H 1.08999 * 109.47312 * 60.00099 * 13 10 9 42 42 H 1.09001 * 109.47774 * 299.99875 * 14 13 10 43 43 H 1.09003 * 109.47216 * 179.97438 * 14 13 10 44 44 H 1.08005 * 119.78202 * 179.76520 * 15 5 4 45 45 H 1.08005 * 119.99205 * 180.25978 * 16 15 5 46 46 H 0.97004 * 119.99610 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3692 -0.0005 5 6 1.9346 3.6071 0.0041 6 7 1.1786 4.7726 0.0088 7 6 1.8444 6.0775 0.0083 8 6 2.1937 6.4724 1.4447 9 6 0.9124 6.5539 2.2770 10 6 -0.0226 7.6032 1.6726 11 8 -1.2194 7.6788 2.4497 12 6 -1.1608 8.6279 3.5164 13 6 -0.3718 7.2083 0.2363 14 6 0.9094 7.1270 -0.5960 15 6 3.3297 3.6844 -0.0012 16 6 4.0835 2.5497 -0.0002 17 6 3.4575 1.2880 0.0002 18 6 4.2337 0.1113 0.0008 19 1 3.8226 -0.8069 -0.3921 20 6 5.5360 0.1329 0.5098 21 7 5.9179 1.1130 1.2899 22 14 6.7309 -1.2362 0.0771 23 1 6.0592 -2.2161 -0.8139 24 1 7.9103 -0.6622 -0.6192 25 1 7.1732 -1.9184 1.3197 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 0.2188 2.3169 -0.0005 30 1 0.2099 4.7224 0.0124 31 1 2.7571 6.0196 -0.5847 32 1 2.8598 5.7248 1.8753 33 1 2.6886 7.4435 1.4444 34 1 1.1613 6.8347 3.3004 35 1 0.4171 5.5829 2.2773 36 1 0.4727 8.5741 1.6723 37 1 -0.9788 9.6222 3.1086 38 1 -2.1070 8.6252 4.0576 39 1 -0.3521 8.3606 4.1966 40 1 -1.0383 7.9558 -0.1941 41 1 -0.8672 6.2374 0.2366 42 1 1.4048 8.0979 -0.5965 43 1 0.6607 6.8452 -1.6192 44 1 3.8135 4.6500 -0.0014 45 1 5.1614 2.6177 0.0000 46 1 6.8211 1.1278 1.6433 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168613183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:06 Heat of formation + Delta-G solvation = -86.022464 kcal Electronic energy + Delta-G solvation = -25554.870642 eV Core-core repulsion = 22022.446848 eV Total energy + Delta-G solvation = -3532.423794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.88644 -40.14499 -38.52690 -37.40307 -35.68380 -33.72707 -31.81204 -31.11726 -30.58503 -29.32399 -28.00952 -27.21623 -25.97009 -23.61454 -23.36226 -22.61718 -22.07808 -20.11498 -19.18926 -18.39136 -17.60839 -17.49144 -16.78609 -16.42420 -16.25700 -16.20293 -16.02275 -15.57055 -15.51815 -15.14665 -14.65611 -14.41565 -14.12846 -13.93132 -13.65954 -13.42921 -13.29827 -13.07237 -12.85674 -12.76367 -12.71224 -12.51592 -12.35340 -12.13746 -12.11346 -11.94703 -11.64365 -11.55950 -11.34090 -11.26618 -11.22993 -10.95851 -10.41067 -10.07145 -8.90930 -8.48417 -8.12559 -5.87044 1.12863 1.15479 1.40799 1.55186 1.57688 2.32121 2.76602 2.85629 2.90909 3.02692 3.77232 3.77688 3.84820 4.05990 4.19736 4.27424 4.37078 4.38942 4.47971 4.49590 4.51451 4.52824 4.55072 4.60109 4.64563 4.68036 4.74430 4.84609 4.95586 5.01089 5.08250 5.10392 5.21741 5.23539 5.27612 5.29214 5.42814 5.46121 5.50300 5.67332 5.92101 6.11474 6.31704 6.33015 6.54508 6.88610 6.95585 7.11735 7.20669 7.41253 8.55992 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.003489 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.888104 B = 8023.206718 C = 8672.926135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C 0.045 3.955 4 C -0.256 4.256 5 C 0.159 3.841 6 N -0.738 5.738 7 C 0.154 3.846 8 C -0.129 4.129 9 C -0.129 4.129 10 C 0.094 3.906 11 O -0.409 6.409 12 C 0.025 3.975 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.203 4.203 16 C -0.113 4.113 17 C 0.010 3.990 18 C -0.488 4.488 19 H 0.058 0.942 20 C 0.030 3.970 21 N -0.846 5.846 22 Si 0.973 3.027 23 H -0.266 1.266 24 H -0.264 1.264 25 H -0.270 1.270 26 H 0.110 0.890 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.392 0.608 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 15.325 -0.017 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C -0.001 4.001 4 C -0.279 4.279 5 C 0.059 3.941 6 N -0.372 5.372 7 C 0.048 3.952 8 C -0.168 4.168 9 C -0.167 4.167 10 C 0.036 3.964 11 O -0.329 6.329 12 C -0.071 4.071 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.225 4.225 16 C -0.133 4.133 17 C 0.007 3.993 18 C -0.520 4.520 19 H 0.076 0.924 20 C -0.180 4.180 21 N -0.476 5.476 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.189 1.189 25 H -0.195 1.195 26 H 0.128 0.872 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.139 0.861 30 H 0.228 0.772 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.463 15.241 0.073 18.487 hybrid contribution 0.391 -0.732 0.359 0.904 sum -10.072 14.510 0.432 17.668 Atomic orbital electron populations 1.23051 0.78757 1.04015 1.00840 1.85935 1.21435 1.28166 1.89916 1.19184 0.92032 0.83489 1.05370 1.20305 0.98330 0.91061 1.18245 1.17157 0.90245 0.86104 1.00636 1.44135 1.06729 1.01623 1.84686 1.20846 0.96180 0.82962 0.95228 1.21938 0.96940 1.01623 0.96317 1.21852 0.96224 0.99678 0.98986 1.22187 0.84968 0.98138 0.91059 1.87878 1.37370 1.62086 1.45565 1.22934 1.02951 0.91738 0.89480 1.21528 0.98099 1.02240 0.93040 1.21720 0.94932 0.99105 0.99154 1.20160 0.92117 0.97548 1.12686 1.20637 0.98967 0.91165 1.02565 1.17252 0.88622 0.94518 0.98917 1.19289 0.98497 0.96329 1.37930 0.92352 1.26492 0.99892 0.99185 0.92474 1.69937 1.19451 1.33183 1.25047 0.85307 0.77900 0.78471 0.78842 1.18992 1.18882 1.19527 0.87201 0.93395 0.92876 0.86066 0.77218 0.91394 0.93949 0.89541 0.92427 0.93320 0.90505 0.92645 0.88810 0.94090 0.89891 0.92447 0.88493 0.90378 0.87163 0.87656 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.81 113.37 1.11 2.08 16 2 O -0.34 -16.52 9.78 -89.81 -0.88 -17.40 16 3 C 0.04 2.32 6.71 23.02 0.15 2.48 16 4 C -0.26 -11.37 8.86 22.46 0.20 -11.17 16 5 C 0.16 6.66 6.64 38.61 0.26 6.92 16 6 N -0.74 -23.20 4.37 -318.65 -1.39 -24.59 16 7 C 0.15 3.92 2.47 44.99 0.11 4.03 16 8 C -0.13 -3.26 5.52 30.60 0.17 -3.09 16 9 C -0.13 -3.16 5.38 30.59 0.16 -2.99 16 10 C 0.09 1.86 2.61 30.59 0.08 1.94 16 11 O -0.41 -9.03 10.35 -148.98 -1.54 -10.57 16 12 C 0.03 0.39 10.82 113.37 1.23 1.61 16 13 C -0.11 -2.06 5.40 30.59 0.17 -1.89 16 14 C -0.11 -2.00 5.61 30.59 0.17 -1.83 16 15 C -0.20 -9.37 8.73 22.16 0.19 -9.17 16 16 C -0.11 -6.14 8.62 22.44 0.19 -5.95 16 17 C 0.01 0.58 5.58 -21.17 -0.12 0.46 16 18 C -0.49 -28.94 8.70 23.33 0.20 -28.74 16 19 H 0.06 3.51 7.65 -2.91 -0.02 3.48 16 20 C 0.03 1.64 5.13 85.21 0.44 2.07 16 21 N -0.85 -47.41 10.97 21.82 0.24 -47.17 16 22 Si 0.97 42.18 29.60 68.60 2.03 44.21 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 27 H 0.05 1.53 7.66 -2.39 -0.02 1.52 16 28 H 0.05 1.64 7.66 -2.39 -0.02 1.62 16 29 H 0.12 4.61 6.29 -2.91 -0.02 4.60 16 30 H 0.39 11.25 6.86 -92.71 -0.64 10.61 16 31 H 0.07 1.90 6.44 -2.39 -0.02 1.88 16 32 H 0.04 1.36 7.66 -2.39 -0.02 1.34 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.36 7.87 -2.39 -0.02 1.35 16 35 H 0.05 1.44 7.60 -2.39 -0.02 1.43 16 36 H 0.08 1.23 7.79 -2.39 -0.02 1.22 16 37 H 0.05 0.67 8.09 -2.38 -0.02 0.65 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.04 0.62 7.87 -2.39 -0.02 0.60 16 40 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.06 1.22 6.51 -2.39 -0.02 1.20 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.11 4.55 6.03 -2.91 -0.02 4.53 16 45 H 0.11 6.01 6.17 -2.91 -0.02 5.99 16 46 H 0.28 14.24 8.30 -92.71 -0.77 13.47 16 Total: -1.00 -68.40 358.29 3.52 -64.88 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.34 Total: 33.88 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 4.72 Total: -43.24 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.15 Total: -71.77 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -2.42 Total: -27.97 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -68.40 3.52 -64.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168613183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.139 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds